biology/hmmer - The NetBSD Packages Collection

Implementation of profile HMM software for protein sequence analysis

HMMER is an implementation of profile HMM methods for sensitive database
searches using multiple sequence alignments as queries. HMMER takes
multiple sequence alignment as input and builds statistical model
called "Hidden Markov Model" which can be used as a query into a
sequence database to find and/or align additional homologues of the
sequence family.

Build dependencies

pkgtools/cwrappers

Runtime dependencies

(none)

Available binary packages

aarch64:hmmer-3.0.tgz(NetBSD 9.0)
aarch64:hmmer-3.0.tgz(NetBSD 9.0)
aarch64:hmmer-3.0.tgz(NetBSD 9.0)
alpha:hmmer-3.0.tgz(NetBSD 9.0)
alpha:hmmer-3.0.tgz(NetBSD 9.0)
earm:hmmer-3.0.tgz(NetBSD 9.0)
earmv6hf:hmmer-3.0.tgz(NetBSD 9.0)
earmv6hf:hmmer-3.0.tgz(NetBSD 9.0)
earmv6hf:hmmer-3.0.tgz(NetBSD 9.0)
earmv6hf:hmmer-3.0.tgz(NetBSD 9.0)
earmv7hf:hmmer-3.0.tgz(NetBSD 8.0)
earmv7hf:hmmer-3.0.tgz(NetBSD 8.0)
earmv7hf:hmmer-3.0.tgz(NetBSD 8.0)
earmv7hf:hmmer-3.0.tgz(NetBSD 8.0)
earmv7hf:hmmer-3.0.tgz(NetBSD 9.0)
earmv7hf:hmmer-3.0.tgz(NetBSD 9.0)
earmv7hf:hmmer-3.0.tgz(NetBSD 9.0)
earmv7hf:hmmer-3.0.tgz(NetBSD 9.0)
earmv7hf:hmmer-3.0.tgz(NetBSD 9.0)
i386:hmmer-3.0.tgz(NetBSD 8.0)
i386:hmmer-3.0.tgz(NetBSD 8.0)
i386:hmmer-3.0.tgz(NetBSD 8.0)
i386:hmmer-3.0.tgz(NetBSD 9.0)
i386:hmmer-3.0.tgz(NetBSD 9.0)
i386:hmmer-3.0.tgz(NetBSD 9.0)
mips64eb:hmmer-3.0.tgz(NetBSD 9.0)
mips64eb:hmmer-3.0.tgz(NetBSD 9.0)
sparc64:hmmer-3.0.tgz(NetBSD 9.0)
sparc64:hmmer-3.0.tgz(NetBSD 9.0)
sparc64:hmmer-3.0.tgz(NetBSD 9.0)
sparc:hmmer-3.0.tgz(NetBSD 9.0)
x86_64:hmmer-3.0.tgz(NetBSD 9.0)
x86_64:hmmer-3.0.tgz(NetBSD 9.0)
x86_64:hmmer-3.0.tgz(NetBSD 9.0)
x86_64:hmmer-3.0.tgz(NetBSD 9.0)
x86_64:hmmer-3.0.tgz(NetBSD 8.0)
x86_64:hmmer-3.0.tgz(NetBSD 8.0)
x86_64:hmmer-3.0.tgz(NetBSD 8.0)
x86_64:hmmer-3.0.tgz(NetBSD 9.0)
x86_64:hmmer-3.0.tgz(NetBSD 9.0)
x86_64:hmmer-3.0.tgz(NetBSD 9.0)
x86_64:hmmer-3.0.tgz(NetBSD 9.0)

Binary packages can be installed with pkgin or pkg_add(1). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.


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