biology/fastq-trim - The NetBSD Packages Collection

Lightening fast sequence read trimmer

Fastq-trim is a lightening fast read trimming tool for QA of DNA and RNA reads
prior to analyses such as RNA-Seq.  it runs in a fraction of the time required
by popular trimmers and uses only a few megabytes of RAM, so it will run
almost entirely in cache.  The design supports adding any number of alignment
functions, so it can be easily adapted to any trimming needs.

Build dependencies

pkgtools/mktools pkgtools/cwrappers

Runtime dependencies


Binary packages

NetBSD 10.0x86_64fastq-trim-0.1.2.tgz
NetBSD 8.0powerpcfastq-trim-
NetBSD 8.0powerpcfastq-trim-
NetBSD 9.0alphafastq-trim-0.1.2.tgz
NetBSD 9.0sparc64fastq-trim-0.1.2.tgz
NetBSD 9.0sparcfastq-trim-0.1.2.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options


Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.