biology/py-cutadapt - The NetBSD Packages Collection

Find and remove adapter sequences, primers, poly-A tails, etc

Cutadapt finds and removes adapter sequences, primers, poly-A tails
and other types of unwanted sequence from your high-throughput
sequencing reads.

Build dependencies

devel/py-setuptools devel/py-setuptools_scm devel/py-wheel devel/py-cython devel/py-build misc/py-installer pkgtools/mktools pkgtools/cwrappers

Runtime dependencies

devel/py-xopen biology/py-dnaio lang/python311 lang/python311

Binary packages

OSArchitectureVersion
NetBSD 10.0aarch64py310-cutadapt-3.5.tgz
NetBSD 10.0aarch64py311-cutadapt-3.5.tgz
NetBSD 10.0aarch64py312-cutadapt-3.5.tgz
NetBSD 10.0aarch64py38-cutadapt-3.5.tgz
NetBSD 10.0aarch64py39-cutadapt-3.5.tgz
NetBSD 10.0aarch64py310-cutadapt-3.5.tgz
NetBSD 10.0aarch64py311-cutadapt-3.5.tgz
NetBSD 10.0aarch64py38-cutadapt-3.5.tgz
NetBSD 10.0aarch64py39-cutadapt-3.5.tgz
NetBSD 10.0aarch64py310-cutadapt-4.7.tgz
NetBSD 10.0aarch64py311-cutadapt-4.7.tgz
NetBSD 10.0aarch64py312-cutadapt-4.7.tgz
NetBSD 10.0aarch64py38-cutadapt-4.7.tgz
NetBSD 10.0aarch64py39-cutadapt-4.7.tgz
NetBSD 10.0aarch64ebpy310-cutadapt-3.5.tgz
NetBSD 10.0aarch64ebpy311-cutadapt-3.5.tgz
NetBSD 10.0aarch64ebpy312-cutadapt-3.5.tgz
NetBSD 10.0aarch64ebpy38-cutadapt-3.5.tgz
NetBSD 10.0aarch64ebpy39-cutadapt-3.5.tgz
NetBSD 10.0aarch64ebpy310-cutadapt-4.7.tgz
NetBSD 10.0aarch64ebpy311-cutadapt-4.7.tgz
NetBSD 10.0aarch64ebpy312-cutadapt-4.7.tgz
NetBSD 10.0aarch64ebpy38-cutadapt-4.7.tgz
NetBSD 10.0aarch64ebpy39-cutadapt-4.7.tgz
NetBSD 10.0alphapy310-cutadapt-3.5.tgz
NetBSD 10.0alphapy311-cutadapt-3.5.tgz
NetBSD 10.0alphapy312-cutadapt-3.5.tgz
NetBSD 10.0alphapy38-cutadapt-3.5.tgz
NetBSD 10.0alphapy39-cutadapt-3.5.tgz
NetBSD 10.0earmv6hfpy310-cutadapt-3.5.tgz
NetBSD 10.0earmv6hfpy311-cutadapt-3.5.tgz
NetBSD 10.0earmv6hfpy312-cutadapt-3.5.tgz
NetBSD 10.0earmv6hfpy38-cutadapt-3.5.tgz
NetBSD 10.0earmv6hfpy39-cutadapt-3.5.tgz
NetBSD 10.0earmv6hfpy310-cutadapt-3.5.tgz
NetBSD 10.0earmv6hfpy311-cutadapt-3.5.tgz
NetBSD 10.0earmv6hfpy38-cutadapt-3.5.tgz
NetBSD 10.0earmv6hfpy39-cutadapt-3.5.tgz
NetBSD 10.0earmv6hfpy310-cutadapt-4.7.tgz
NetBSD 10.0earmv6hfpy311-cutadapt-4.7.tgz
NetBSD 10.0earmv6hfpy312-cutadapt-4.7.tgz
NetBSD 10.0earmv6hfpy38-cutadapt-4.7.tgz
NetBSD 10.0earmv6hfpy39-cutadapt-4.7.tgz
NetBSD 10.0earmv7hfpy310-cutadapt-3.5.tgz
NetBSD 10.0earmv7hfpy311-cutadapt-3.5.tgz
NetBSD 10.0earmv7hfpy312-cutadapt-3.5.tgz
NetBSD 10.0earmv7hfpy38-cutadapt-3.5.tgz
NetBSD 10.0earmv7hfpy39-cutadapt-3.5.tgz
NetBSD 10.0earmv7hfpy310-cutadapt-3.5.tgz
NetBSD 10.0earmv7hfpy311-cutadapt-3.5.tgz
NetBSD 10.0earmv7hfpy38-cutadapt-3.5.tgz
NetBSD 10.0earmv7hfpy39-cutadapt-3.5.tgz
NetBSD 10.0earmv7hfpy310-cutadapt-4.7.tgz
NetBSD 10.0earmv7hfpy311-cutadapt-4.7.tgz
NetBSD 10.0earmv7hfpy312-cutadapt-4.7.tgz
NetBSD 10.0earmv7hfpy38-cutadapt-4.7.tgz
NetBSD 10.0earmv7hfpy39-cutadapt-4.7.tgz
NetBSD 10.0i386py310-cutadapt-4.7.tgz
NetBSD 10.0i386py311-cutadapt-4.7.tgz
NetBSD 10.0i386py312-cutadapt-4.7.tgz
NetBSD 10.0i386py38-cutadapt-4.7.tgz
NetBSD 10.0i386py39-cutadapt-4.7.tgz
NetBSD 10.0i386py310-cutadapt-3.5.tgz
NetBSD 10.0i386py311-cutadapt-3.5.tgz
NetBSD 10.0i386py312-cutadapt-3.5.tgz
NetBSD 10.0i386py38-cutadapt-3.5.tgz
NetBSD 10.0i386py39-cutadapt-3.5.tgz
NetBSD 10.0powerpcpy310-cutadapt-3.5.tgz
NetBSD 10.0powerpcpy311-cutadapt-3.5.tgz
NetBSD 10.0powerpcpy37-cutadapt-3.5.tgz
NetBSD 10.0powerpcpy38-cutadapt-3.5.tgz
NetBSD 10.0powerpcpy39-cutadapt-3.5.tgz
NetBSD 10.0sparcpy311-cutadapt-3.5.tgz
NetBSD 10.0sparcpy312-cutadapt-3.5.tgz
NetBSD 10.0sparcpy38-cutadapt-3.5.tgz
NetBSD 10.0x86_64py310-cutadapt-4.7.tgz
NetBSD 10.0x86_64py311-cutadapt-4.7.tgz
NetBSD 10.0x86_64py312-cutadapt-4.7.tgz
NetBSD 10.0x86_64py38-cutadapt-4.7.tgz
NetBSD 10.0x86_64py39-cutadapt-4.7.tgz
NetBSD 10.0x86_64py310-cutadapt-3.5.tgz
NetBSD 10.0x86_64py311-cutadapt-3.5.tgz
NetBSD 10.0x86_64py312-cutadapt-3.5.tgz
NetBSD 10.0x86_64py38-cutadapt-3.5.tgz
NetBSD 10.0x86_64py39-cutadapt-3.5.tgz
NetBSD 8.0i386py310-cutadapt-3.5.tgz
NetBSD 8.0i386py311-cutadapt-3.5.tgz
NetBSD 8.0i386py38-cutadapt-3.5.tgz
NetBSD 8.0i386py39-cutadapt-3.5.tgz
NetBSD 8.0powerpcpy310-cutadapt-3.5.tgz
NetBSD 8.0powerpcpy311-cutadapt-3.5.tgz
NetBSD 8.0powerpcpy38-cutadapt-3.5.tgz
NetBSD 8.0powerpcpy39-cutadapt-3.5.tgz
NetBSD 8.0powerpcpy310-cutadapt-3.5.tgz
NetBSD 8.0powerpcpy311-cutadapt-3.5.tgz
NetBSD 8.0powerpcpy312-cutadapt-3.5.tgz
NetBSD 8.0powerpcpy38-cutadapt-3.5.tgz
NetBSD 8.0powerpcpy39-cutadapt-3.5.tgz
NetBSD 8.0x86_64py310-cutadapt-3.5.tgz
NetBSD 8.0x86_64py311-cutadapt-3.5.tgz
NetBSD 8.0x86_64py38-cutadapt-3.5.tgz
NetBSD 8.0x86_64py39-cutadapt-3.5.tgz
NetBSD 8.0x86_64py310-cutadapt-3.5.tgz
NetBSD 8.0x86_64py311-cutadapt-3.5.tgz
NetBSD 8.0x86_64py312-cutadapt-3.5.tgz
NetBSD 8.0x86_64py38-cutadapt-3.5.tgz
NetBSD 8.0x86_64py39-cutadapt-3.5.tgz
NetBSD 9.0aarch64py310-cutadapt-3.5.tgz
NetBSD 9.0aarch64py311-cutadapt-3.5.tgz
NetBSD 9.0aarch64py312-cutadapt-3.5.tgz
NetBSD 9.0aarch64py38-cutadapt-3.5.tgz
NetBSD 9.0aarch64py39-cutadapt-3.5.tgz
NetBSD 9.0aarch64py310-cutadapt-3.5.tgz
NetBSD 9.0aarch64py311-cutadapt-3.5.tgz
NetBSD 9.0aarch64py38-cutadapt-3.5.tgz
NetBSD 9.0aarch64py39-cutadapt-3.5.tgz
NetBSD 9.0aarch64py310-cutadapt-4.7.tgz
NetBSD 9.0aarch64py311-cutadapt-4.7.tgz
NetBSD 9.0aarch64py312-cutadapt-4.7.tgz
NetBSD 9.0aarch64py38-cutadapt-4.7.tgz
NetBSD 9.0aarch64py39-cutadapt-4.7.tgz
NetBSD 9.0alphapy310-cutadapt-3.5.tgz
NetBSD 9.0alphapy311-cutadapt-3.5.tgz
NetBSD 9.0alphapy38-cutadapt-3.5.tgz
NetBSD 9.0alphapy39-cutadapt-3.5.tgz
NetBSD 9.0earmv6hfpy310-cutadapt-3.5.tgz
NetBSD 9.0earmv6hfpy311-cutadapt-3.5.tgz
NetBSD 9.0earmv6hfpy38-cutadapt-3.5.tgz
NetBSD 9.0earmv6hfpy39-cutadapt-3.5.tgz
NetBSD 9.0earmv6hfpy310-cutadapt-3.5.tgz
NetBSD 9.0earmv6hfpy311-cutadapt-3.5.tgz
NetBSD 9.0earmv6hfpy38-cutadapt-3.5.tgz
NetBSD 9.0earmv6hfpy39-cutadapt-3.5.tgz
NetBSD 9.0earmv6hfpy310-cutadapt-4.7.tgz
NetBSD 9.0earmv6hfpy311-cutadapt-4.7.tgz
NetBSD 9.0earmv6hfpy38-cutadapt-4.7.tgz
NetBSD 9.0earmv6hfpy39-cutadapt-4.7.tgz
NetBSD 9.0earmv7hfpy310-cutadapt-3.5.tgz
NetBSD 9.0earmv7hfpy311-cutadapt-3.5.tgz
NetBSD 9.0earmv7hfpy38-cutadapt-3.5.tgz
NetBSD 9.0earmv7hfpy39-cutadapt-3.5.tgz
NetBSD 9.0earmv7hfpy310-cutadapt-3.5.tgz
NetBSD 9.0earmv7hfpy311-cutadapt-3.5.tgz
NetBSD 9.0earmv7hfpy38-cutadapt-3.5.tgz
NetBSD 9.0earmv7hfpy39-cutadapt-3.5.tgz
NetBSD 9.0earmv7hfpy310-cutadapt-4.7.tgz
NetBSD 9.0earmv7hfpy311-cutadapt-4.7.tgz
NetBSD 9.0earmv7hfpy38-cutadapt-4.7.tgz
NetBSD 9.0earmv7hfpy39-cutadapt-4.7.tgz
NetBSD 9.0i386py310-cutadapt-4.7.tgz
NetBSD 9.0i386py311-cutadapt-4.7.tgz
NetBSD 9.0i386py38-cutadapt-4.7.tgz
NetBSD 9.0i386py39-cutadapt-4.7.tgz
NetBSD 9.0i386py310-cutadapt-3.5.tgz
NetBSD 9.0i386py311-cutadapt-3.5.tgz
NetBSD 9.0i386py38-cutadapt-3.5.tgz
NetBSD 9.0i386py39-cutadapt-3.5.tgz
NetBSD 9.0mips64ebpy310-cutadapt-3.5.tgz
NetBSD 9.0mips64ebpy311-cutadapt-3.5.tgz
NetBSD 9.0mips64ebpy38-cutadapt-3.5.tgz
NetBSD 9.0mips64ebpy39-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy310-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy311-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy312-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy37-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy38-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy39-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy310-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy311-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy37-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy38-cutadapt-3.5.tgz
NetBSD 9.0powerpcpy39-cutadapt-3.5.tgz
NetBSD 9.0sparc64py310-cutadapt-3.5.tgz
NetBSD 9.0sparc64py311-cutadapt-3.5.tgz
NetBSD 9.0sparc64py38-cutadapt-3.5.tgz
NetBSD 9.0sparc64py39-cutadapt-3.5.tgz
NetBSD 9.0sparcpy310-cutadapt-3.5.tgz
NetBSD 9.0sparcpy311-cutadapt-3.5.tgz
NetBSD 9.0sparcpy38-cutadapt-3.5.tgz
NetBSD 9.0sparcpy39-cutadapt-3.5.tgz
NetBSD 9.0x86_64py310-cutadapt-4.7.tgz
NetBSD 9.0x86_64py311-cutadapt-4.7.tgz
NetBSD 9.0x86_64py312-cutadapt-4.7.tgz
NetBSD 9.0x86_64py38-cutadapt-4.7.tgz
NetBSD 9.0x86_64py39-cutadapt-4.7.tgz
NetBSD 9.0x86_64py310-cutadapt-3.5.tgz
NetBSD 9.0x86_64py311-cutadapt-3.5.tgz
NetBSD 9.0x86_64py312-cutadapt-3.5.tgz
NetBSD 9.0x86_64py38-cutadapt-3.5.tgz
NetBSD 9.0x86_64py39-cutadapt-3.5.tgz
NetBSD 9.3x86_64py310-cutadapt-4.7.tgz
NetBSD 9.3x86_64py311-cutadapt-4.7.tgz
NetBSD 9.3x86_64py312-cutadapt-4.7.tgz
NetBSD 9.3x86_64py38-cutadapt-4.7.tgz
NetBSD 9.3x86_64py39-cutadapt-4.7.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.