biology/glimmer - The NetBSD Packages Collection

System for finding genes in microbial DNA

Glimmer (Gene Locator and Interpolated Markov Modeler) is a system for finding
genes in microbial DNA, especially the genomes of bacteria and archaea.
Glimmer uses interpolated Markov models (IMMs) to identify the coding regions
and  distinguish them from noncoding DNA. The IMM approach uses a combination
of Markov models from 1st through 8th-order, weighting each model according to
its predictive power.

Build dependencies

pkgtools/cwrappers

Runtime dependencies

(none)

Available binary packages

aarch64:glimmer-2.13nb1.tgz(NetBSD 9.0)
aarch64:glimmer-2.13nb1.tgz(NetBSD 9.0)
aarch64:glimmer-2.13nb1.tgz(NetBSD 9.0)
alpha:glimmer-2.13nb1.tgz(NetBSD 9.0)
alpha:glimmer-2.13nb1.tgz(NetBSD 9.0)
earm:glimmer-2.13nb1.tgz(NetBSD 9.0)
earmv6hf:glimmer-2.13nb1.tgz(NetBSD 9.0)
earmv6hf:glimmer-2.13nb1.tgz(NetBSD 9.0)
earmv6hf:glimmer-2.13nb1.tgz(NetBSD 9.0)
earmv6hf:glimmer-2.13nb1.tgz(NetBSD 9.0)
earmv7hf:glimmer-2.13nb1.tgz(NetBSD 8.0)
earmv7hf:glimmer-2.13nb1.tgz(NetBSD 8.0)
earmv7hf:glimmer-2.13nb1.tgz(NetBSD 8.0)
earmv7hf:glimmer-2.13nb1.tgz(NetBSD 8.0)
earmv7hf:glimmer-2.13nb1.tgz(NetBSD 9.0)
earmv7hf:glimmer-2.13nb1.tgz(NetBSD 9.0)
earmv7hf:glimmer-2.13nb1.tgz(NetBSD 9.0)
earmv7hf:glimmer-2.13nb1.tgz(NetBSD 9.0)
earmv7hf:glimmer-2.13nb1.tgz(NetBSD 9.0)
i386:glimmer-2.13nb1.tgz(NetBSD 8.0)
i386:glimmer-2.13nb1.tgz(NetBSD 8.0)
i386:glimmer-2.13nb1.tgz(NetBSD 8.0)
i386:glimmer-2.13nb1.tgz(NetBSD 9.0)
i386:glimmer-2.13nb1.tgz(NetBSD 9.0)
i386:glimmer-2.13nb1.tgz(NetBSD 9.0)
mips64eb:glimmer-2.13nb1.tgz(NetBSD 9.0)
mips64eb:glimmer-2.13nb1.tgz(NetBSD 9.0)
powerpc:glimmer-2.13nb1.tgz(NetBSD 8.0)
powerpc:glimmer-2.13nb1.tgz(NetBSD 8.0)
powerpc:glimmer-2.13nb1.tgz(NetBSD 8.0)
powerpc:glimmer-2.13nb1.tgz(NetBSD 9.0)
powerpc:glimmer-2.13nb1.tgz(NetBSD 9.0)
sparc64:glimmer-2.13nb1.tgz(NetBSD 9.0)
sparc64:glimmer-2.13nb1.tgz(NetBSD 9.0)
sparc64:glimmer-2.13nb1.tgz(NetBSD 9.0)
sparc:glimmer-2.13nb1.tgz(NetBSD 9.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 9.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 9.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 9.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 9.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 8.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 8.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 8.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 9.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 9.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 9.0)
x86_64:glimmer-2.13nb1.tgz(NetBSD 9.0)

Binary packages can be installed with pkgin or pkg_add(1). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.


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