=> Bootstrap dependency digest>=20010302: found digest-20111104 => Bootstrap dependency fetch-[0-9]*: found fetch-1.7 => Checksum SHA1 OK for openbabel-2.3.0.tar.gz => Checksum RMD160 OK for openbabel-2.3.0.tar.gz ===> Installing dependencies for openbabel-2.3.0nb8 ========================================================================== The supported build options for openbabel are: wx-gui You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.openbabel (not defined) ========================================================================== => Build dependency cmake>=2.8.1nb1: found cmake-2.8.10nb1 => Build dependency nbpatch-[0-9]*: found nbpatch-20100124 => Build dependency eigen>=2.0beta3: found eigen-2.0.17 => Build dependency checkperms>=1.1: found checkperms-1.11 => Full dependency zlib>=1.2.3: found zlib-1.2.7 => Full dependency libxml2>=2.8.0nb2: found libxml2-2.9.0nb1 ===> Overriding tools for openbabel-2.3.0nb8 ===> Extracting for openbabel-2.3.0nb8 ===> Patching for openbabel-2.3.0nb8 => Applying pkgsrc patches for openbabel-2.3.0nb8 ===> Creating toolchain wrappers for openbabel-2.3.0nb8 ===> Configuring for openbabel-2.3.0nb8 => Fixing CMAKE_MODULE_PATH in CMakeLists.txt => Checking for portability problems in extracted files -- The C compiler identification is GNU 4.5.2 -- The CXX compiler identification is GNU 4.5.2 CMake Warning (dev) at /usr/pkg/share/cmake-2.8/Modules/Platform/Linux.cmake:51 (include): File /usr/pkg/share/cmake-2.8/Modules/Platform/Linux.cmake includes /tmp/pkgsrc/biology/openbabel/work/.buildlink/cmake-Modules/Platform/UnixPaths.cmake (found via CMAKE_MODULE_PATH) which shadows /usr/pkg/share/cmake-2.8/Modules/Platform/UnixPaths.cmake. This may cause errors later on . Policy CMP0017 is not set: Prefer files from the CMake module directory when including from there. Run "cmake --help-policy CMP0017" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/pkg/share/cmake-2.8/Modules/CMakeSystemSpecificInformation.cmake:36 (include) CMakeLists.txt:6 (project) This warning is for project developers. Use -Wno-dev to suppress it. -- Check for working C compiler: /tmp/pkgsrc/biology/openbabel/work/.wrapper/bin/gcc -- Check for working C compiler: /tmp/pkgsrc/biology/openbabel/work/.wrapper/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /tmp/pkgsrc/biology/openbabel/work/.wrapper/bin/g++ -- Check for working CXX compiler: /tmp/pkgsrc/biology/openbabel/work/.wrapper/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done Using included inchi library. -- Found LibXml2: /tmp/pkgsrc/biology/openbabel/work/.buildlink/lib/libxml2.so (found version "2.9.0") -- Found ZLIB: /tmp/pkgsrc/biology/openbabel/work/.buildlink/lib/libz.so (found version "1.2.7") -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Found Eigen2: /tmp/pkgsrc/biology/openbabel/work/.buildlink/include/eigen2 -- Looking for getopt -- Looking for getopt - found GUI will not be built -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) -- Configuring done -- Generating done -- Build files have been written to: /tmp/pkgsrc/biology/openbabel/work/openbabel-2.3.0 => Rewrite cmake Dependencies files