=> Bootstrap dependency digest>=20010302: found digest-20111104 => Bootstrap dependency fetch-[0-9]*: found fetch-1.7 WARNING: [license.mk] Every package should define a LICENSE. => Checksum SHA1 OK for openmpi-1.6.tar.bz2 => Checksum RMD160 OK for openmpi-1.6.tar.bz2 ===> Installing dependencies for openmpi-1.6 ========================================================================== The supported build options for openmpi are: debug openmpi-vampirtrace The currently selected options are: openmpi-vampirtrace You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.openmpi (not defined) ========================================================================== => Build dependency libtool-base>=2.2.6bnb3: found libtool-base-2.2.6bnb8 => Build dependency f2c>=20090411nb2: found f2c-20100903 => Build dependency checkperms>=1.1: found checkperms-1.11 => Full dependency perl>=5.0: found perl-5.14.2nb5 => Full dependency freetype2>=2.4.7nb2: found freetype2-2.4.10 => Full dependency libltdl>=2.2.6: found libltdl-2.2.6b => Full dependency libf2c>=20090201nb3: found libf2c-20090201nb3 ===> Overriding tools for openmpi-1.6 ===> Extracting for openmpi-1.6 ===> Patching for openmpi-1.6 => Applying pkgsrc patches for openmpi-1.6 => Fixing libltdl convenience library linkage. ===> Creating toolchain wrappers for openmpi-1.6 ===> Configuring for openmpi-1.6 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files ============================================================================ == Configuring Open MPI ============================================================================ *** Startup tests checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for x86_64-unknown-linux-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /tmp/pkgsrc/parallel/openmpi/work/.tools/bin/mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking how to create a ustar tar archive... gnutar checking dependency style of gcc... gcc3 checking whether make supports nested variables... yes *** Checking versions checking Open MPI version... 1.6 checking Open MPI release date... May 10, 2012 checking Open MPI Subversion repository version... r26429 checking Open MPI Run-Time Environment version... 1.6 checking Open MPI Run-Time Environment release date... May 10, 2012 checking Open MPI Run-Time Environment Subversion repository version... r26429 checking Open Portable Access Layer version... 1.6 checking Open Portable Access Layer release date... May 10, 2012 checking Open Portable Access Layer Subversion repository version... r26429 *** Initialization, setup configure: builddir: /tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6 configure: srcdir: /tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6 installing to directory "/usr/pkg" *** OPAL Configuration options checking if want to run code coverage... no checking if want to compile with branch probabilities... no checking if want to debug memory usage... no checking if want to profile memory usage... no checking if want developer-level compiler pickyness... no checking if want developer-level debugging code... no checking if want to install project-internal header files... no checking if want pretty-print stacktrace... yes checking if want pty support... yes checking if want weak symbol support... yes checking if want dlopen support... yes checking if want heterogeneous support... no checking if want trace file debugging... no checking if want fault tolerance... Disabled fault tolerance checking if want IPv6 support... no checking if want package/brand string... Open MPI pbulk@x86_64-linux Distribution checking if want ident string... 1.6 checking if want to use an alternative checksum algo for messages... no checking maximum length of processor name... 256 checking maximum length of error string... 256 checking maximum length of object name... 64 checking maximum length of info key... 36 checking maximum length of info val... 256 checking maximum length of port name... 1024 checking maximum length of datarep string... 128 *** ORTE Configuration options checking if want full RTE support... yes checking if want orterun "--prefix" behavior to be enabled by default... no checking if want reliable multicast... no *** OMPI Configuration options checking if want compile-time warnings inside of mpi.h... no checking if want sparse process groups... no checking if want peruse support... no checking if want Fortran 77 bindings... yes checking if want Fortran 90 bindings... no checking Fortran 90 bindings "size"... disabled (Fortran 90 bindings disabled) checking if want PMPI... yes checking if want C++ bindings... yes checking if want MPI::SEEK_SET support... yes checking if want run-time MPI parameter checking... runtime checking max supported array dimension in F90 MPI bindings... 4 ============================================================================ == Compiler and preprocessor tests ============================================================================ *** C compiler and preprocessor checking for x86_64-unknown-linux-gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc and cc understand -c and -o together... yes checking for the C compiler vendor... gnu checking for ANSI C header files... (cached) yes checking if gcc supports -finline-functions... yes checking if gcc supports -fno-strict-aliasing... yes configure: WARNING: -fno-strict-aliasing has been added to CFLAGS checking if gcc supports __builtin_expect... yes checking if gcc supports __builtin_prefetch... yes checking for C optimization flags... -DNDEBUG -O3 -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include -finline-functions -fno-strict-aliasing checking for Interix environment... no checking for C ident string support... #ident checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for int128_t... no checking for uint128_t... no checking for long long... yes checking for long double... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for intptr_t... yes checking for uintptr_t... yes checking for mode_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking size of void *... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of wchar_t... 4 checking alignment of _Bool... 1 checking alignment of int8_t... 1 checking alignment of int16_t... 2 checking alignment of int32_t... 4 checking alignment of int64_t... 8 checking alignment of char... 1 checking alignment of short... 2 checking alignment of wchar_t... 4 checking alignment of int... 4 checking alignment of long... 8 checking alignment of long long... 8 checking alignment of float... 4 checking alignment of double... 8 checking alignment of long double... 16 checking alignment of float _Complex... 4 checking alignment of double _Complex... 8 checking alignment of long double _Complex... 16 checking alignment of void *... 8 checking for C bool type... no checking size of _Bool... 1 checking for inline... __inline__ checking for C/C++ restrict keyword... __restrict checking for weak symbol support... yes checking for functional offsetof macro... yes *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for the C++ compiler vendor... gnu checking if g++ supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if C and C++ are link compatible... yes checking for C++ optimization flags... -DNDEBUG -O3 -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include -finline-functions checking size of bool... 1 checking alignment of bool... 1 *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking if C++ compiler works... yes checking if g++ supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if C and C++ are link compatible... (cached) yes checking for C++ optimization flags... -DNDEBUG -O3 -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include -finline-functions checking size of bool... (cached) 1 checking alignment of bool... (cached) 1 checking if able to build the MPI C++ bindings... yes checking for the C++ compiler vendor... (cached) gnu checking if want C++ exception handling... no checking for C++ template_repository_directory... not used checking for C++ compiler template parameters... none needed checking for C++ ident string support... #ident checking if g++ supports __builtin_expect... yes checking if g++ supports __builtin_prefetch... yes checking if g++ supports const_cast<> properly... yes *** Compiler characteristics checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(deprecated_argument)... yes checking for __attribute__(format)... yes checking for __attribute__(format_funcptr)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(noreturn_funcptr)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(visibility)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking for compiler familyid... 1 checking for compiler familyname... GNU checking for compiler version... 263426 checking for compiler version_str... 4.5.2 *** Assembler checking dependency style of gcc... gcc3 checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking for fgrep... /bin/grep -F checking if need to remove -g from CCASFLAGS... no checking whether to enable smp locks... yes checking if .proc/endp is needed... no checking directive for setting text section... .text checking directive for exporting symbols... .globl checking for objdump... objdump checking if .note.GNU-stack is needed... yes checking suffix for labels... : checking prefix for global symbol labels... checking prefix for lsym labels... .L checking prefix for function in .type... @ checking if .size is needed... yes checking if .align directive takes logarithmic value... no checking if gcc supports GCC inline assembly... yes checking if gcc supports DEC inline assembly... no checking if gcc supports XLC inline assembly... no checking if g++ supports GCC inline assembly... yes checking if g++ supports DEC inline assembly... no checking if g++ supports XLC inline assembly... no checking for assembly format... default-.text-.globl-:--.L-@-1-0-1-1-1 checking for asssembly architecture... AMD64 checking for perl... /usr/pkg/bin/perl checking for pre-built assembly file... yes (atomic-amd64-linux.s) checking for atomic assembly filename... atomic-amd64-linux.s *** Fortran 77 compiler checking for x86_64-unknown-linux-gfortran... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes *** Fortran 90/95 compiler checking for x86_64-unknown-linux-gfortran... f77 checking whether we are using the GNU Fortran compiler... yes checking whether f77 accepts -g... yes checking if Fortran 77 compiler works... yes checking f77 external symbol convention... double underscore checking if C and Fortran 77 are link compatible... yes checking to see if F77 compiler likes the C++ exception flags... skipped (no C++ exceptions flags) checking to see if mpif77/mpif90 compilers need additional linker flags... none checking if Fortran 77 compiler supports CHARACTER... yes checking size of Fortran 77 CHARACTER... 1 checking for C type corresponding to CHARACTER... char checking alignment of Fortran CHARACTER... 1 checking if Fortran 77 compiler supports LOGICAL... yes checking size of Fortran 77 LOGICAL... 4 checking for C type corresponding to LOGICAL... int checking alignment of Fortran LOGICAL... 4 checking if Fortran 77 compiler supports LOGICAL*1... yes checking size of Fortran 77 LOGICAL*1... 1 checking for C type corresponding to LOGICAL*1... char checking alignment of Fortran LOGICAL*1... 1 checking if Fortran 77 compiler supports LOGICAL*2... yes checking size of Fortran 77 LOGICAL*2... 2 checking for C type corresponding to LOGICAL*2... short checking alignment of Fortran LOGICAL*2... 2 checking if Fortran 77 compiler supports LOGICAL*4... yes checking size of Fortran 77 LOGICAL*4... 4 checking for C type corresponding to LOGICAL*4... int checking alignment of Fortran LOGICAL*4... 4 checking if Fortran 77 compiler supports LOGICAL*8... no checking if Fortran 77 compiler supports INTEGER... yes checking size of Fortran 77 INTEGER... 4 checking for C type corresponding to INTEGER... int checking alignment of Fortran INTEGER... 4 checking if Fortran 77 compiler supports INTEGER*1... yes checking size of Fortran 77 INTEGER*1... 1 checking for C type corresponding to INTEGER*1... char checking alignment of Fortran INTEGER*1... 1 checking if Fortran 77 compiler supports INTEGER*2... yes checking size of Fortran 77 INTEGER*2... 2 checking for C type corresponding to INTEGER*2... short checking alignment of Fortran INTEGER*2... 2 checking if Fortran 77 compiler supports INTEGER*4... yes checking size of Fortran 77 INTEGER*4... 4 checking for C type corresponding to INTEGER*4... int checking alignment of Fortran INTEGER*4... 4 checking if Fortran 77 compiler supports INTEGER*8... (cached) no checking if Fortran 77 compiler supports INTEGER*16... no checking if Fortran 77 compiler supports REAL... yes checking size of Fortran 77 REAL... 4 checking for C type corresponding to REAL... float checking alignment of Fortran REAL... 4 checking if Fortran 77 compiler supports REAL*2... no checking if Fortran 77 compiler supports REAL*4... yes checking size of Fortran 77 REAL*4... 4 checking for C type corresponding to REAL*4... float checking alignment of Fortran REAL*4... 4 checking if Fortran 77 compiler supports REAL*8... yes checking size of Fortran 77 REAL*8... 8 checking for C type corresponding to REAL*8... double checking alignment of Fortran REAL*8... 8 checking if Fortran 77 compiler supports REAL*16... no checking for C type matching bit representation of REAL*16... skipped (no REAL*16) configure: WARNING: MPI_REAL16 and MPI_COMPLEX32 support have been disabled checking if Fortran 77 compiler supports DOUBLE PRECISION... yes checking size of Fortran 77 DOUBLE PRECISION... 8 checking for C type corresponding to DOUBLE PRECISION... double checking alignment of Fortran DOUBLE PRECISION... 8 checking if Fortran 77 compiler supports COMPLEX... yes checking size of Fortran 77 COMPLEX... 8 checking alignment of Fortran COMPLEX... 4 checking if Fortran 77 compiler supports DOUBLE COMPLEX... yes checking size of Fortran 77 DOUBLE COMPLEX... 16 checking alignment of Fortran DOUBLE COMPLEX... 8 checking if Fortran 77 compiler supports COMPLEX*8... yes checking size of Fortran 77 COMPLEX*8... 8 checking alignment of Fortran COMPLEX*8... 4 checking if Fortran 77 compiler supports COMPLEX*16... yes checking size of Fortran 77 COMPLEX*16... 16 checking alignment of Fortran COMPLEX*16... 8 checking if Fortran 77 compiler supports COMPLEX*32... no checking for max Fortran MPI handle index... ( 0x7fffffff < 2147483647 ? 0x7fffffff : 2147483647 ) checking Fortran value for .TRUE. logical type... 1 checking for correct handling of Fortran logical arrays... yes checking for the value of MPI_STATUS_SIZE... 6 Fortran INTEGERs configure: WARNING: *** Fortran 90/95 bindings disabled by user checking for extra arguments to build a shared library... none needed checking to see if F90 compiler likes the C++ exception flags... skipped (no F90 bindings) checking if Fortran 90 compiler supports CHARACTER... skipped checking if Fortran 90 compiler supports LOGICAL... skipped checking if Fortran 90 compiler supports LOGICAL*1... skipped checking if Fortran 90 compiler supports LOGICAL*2... skipped checking if Fortran 90 compiler supports LOGICAL*4... skipped checking if Fortran 90 compiler supports LOGICAL*8... skipped checking if Fortran 90 compiler supports INTEGER... skipped checking if Fortran 90 compiler supports INTEGER*1... skipped checking if Fortran 90 compiler supports INTEGER*2... skipped checking if Fortran 90 compiler supports INTEGER*4... skipped checking if Fortran 90 compiler supports INTEGER*8... skipped checking if Fortran 90 compiler supports INTEGER*16... skipped checking if Fortran 90 compiler supports REAL... skipped checking if Fortran 90 compiler supports REAL*2... skipped checking if Fortran 90 compiler supports REAL*4... skipped checking if Fortran 90 compiler supports REAL*8... skipped checking if Fortran 90 compiler supports REAL*16... skipped checking if Fortran 90 compiler supports DOUBLE PRECISION... skipped checking if Fortran 90 compiler supports COMPLEX... skipped checking if Fortran 90 compiler supports COMPLEX*8... skipped checking if Fortran 90 compiler supports COMPLEX*16... skipped checking if Fortran 90 compiler supports COMPLEX*32... skipped checking if Fortran 90 compiler supports DOUBLE COMPLEX... skipped ============================================================================ == Header file tests ============================================================================ checking alloca.h usability... yes checking alloca.h presence... yes checking for alloca.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking for inttypes.h... (cached) yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking libutil.h usability... no checking libutil.h presence... no checking for libutil.h... no checking for memory.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking pty.h usability... yes checking pty.h presence... yes checking for pty.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stropts.h usability... yes checking stropts.h presence... yes checking for stropts.h... yes checking sys/fcntl.h usability... yes checking sys/fcntl.h presence... yes checking for sys/fcntl.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/queue.h usability... yes checking sys/queue.h presence... yes checking for sys/queue.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/stat.h... (cached) yes checking sys/statfs.h usability... yes checking sys/statfs.h presence... yes checking for sys/statfs.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/tree.h usability... no checking sys/tree.h presence... no checking for sys/tree.h... no checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking net/uio.h usability... no checking net/uio.h presence... no checking for net/uio.h... no checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking ulimit.h usability... yes checking ulimit.h presence... yes checking for ulimit.h... yes checking for unistd.h... (cached) yes checking util.h usability... no checking util.h presence... no checking for util.h... no checking utmp.h usability... yes checking utmp.h presence... yes checking for utmp.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking sys/sysctl.h usability... yes checking sys/sysctl.h presence... yes checking for sys/sysctl.h... yes checking crt_externs.h usability... no checking crt_externs.h presence... no checking for crt_externs.h... no checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking ioLib.h usability... no checking ioLib.h presence... no checking for ioLib.h... no checking sockLib.h usability... no checking sockLib.h presence... no checking for sockLib.h... no checking hostLib.h usability... no checking hostLib.h presence... no checking for hostLib.h... no checking shlwapi.h usability... no checking shlwapi.h presence... no checking for shlwapi.h... no checking sys/synch.h usability... no checking sys/synch.h presence... no checking for sys/synch.h... no checking for net/if.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking if works... yes ============================================================================ == Type tests ============================================================================ checking size of pid_t... 4 checking for socklen_t... yes checking for struct sockaddr_in... yes checking for struct sockaddr_in6... yes checking for struct sockaddr_storage... yes checking whether AF_UNSPEC is declared... yes checking whether PF_UNSPEC is declared... yes checking whether AF_INET6 is declared... yes checking whether PF_INET6 is declared... yes checking if SA_RESTART defined in signal.h... yes checking for struct sockaddr.sa_len... no checking for struct dirent.d_type... yes checking for siginfo_t.si_fd... yes checking for siginfo_t.si_band... yes ============================================================================ == Library and Function tests ============================================================================ checking if we need -lutil for openpty... yes checking for openpty... yes checking for gethostbyname in -lnsl... yes checking for socket in -lsocket... no checking if we need -lrt for sched_yield... no checking for sched_yield... yes checking if we need -lgen for dirname... no checking for dirname... yes checking if we need -lm for ceil... yes checking for ceil... yes checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for openpty... (cached) yes checking for isatty... yes checking for getpwuid... yes checking for fork... yes checking for waitpid... yes checking for execve... yes checking for pipe... yes checking for ptsname... yes checking for setsid... yes checking for mmap... yes checking for tcgetpgrp... yes checking for posix_memalign... yes checking for strsignal... yes checking for sysconf... yes checking for syslog... yes checking for regcmp... no checking for regexec... yes checking for regfree... yes checking for _NSGetEnviron... no checking for socketpair... yes checking for strncpy_s... no checking for _strdup... no checking for usleep... yes checking for mkfifo... yes checking for htonl define... no checking for htonl... yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking whether __func__ is declared... yes ============================================================================ == System-specific tests ============================================================================ checking checking for type of MPI_Offset... long long checking checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG checking for _SC_NPROCESSORS_ONLN... yes checking whether byte ordering is bigendian... no checking for broken qsort... no checking if word-sized integers must be word-size aligned... no checking if C compiler and POSIX threads work as is... no checking if C++ compiler and POSIX threads work as is... no checking if F77 compiler and POSIX threads work as is... no checking if C compiler and POSIX threads work with -Kthread... no checking if C compiler and POSIX threads work with -kthread... no checking if C compiler and POSIX threads work with -pthread... yes checking if C++ compiler and POSIX threads work with -Kthread... no checking if C++ compiler and POSIX threads work with -kthread... no checking if C++ compiler and POSIX threads work with -pthread... yes checking if F77 compiler and POSIX threads work with -Kthread... no checking if F77 compiler and POSIX threads work with -kthread... no checking if F77 compiler and POSIX threads work with -pthread... yes checking for PTHREAD_MUTEX_ERRORCHECK_NP... yes checking for PTHREAD_MUTEX_ERRORCHECK... yes checking for working POSIX threads package... yes checking if C compiler and Solaris threads work... no checking if C++ compiler and Solaris threads work... no checking if F77 compiler and Solaris threads work... no checking for working Solaris threads package... no checking for type of thread support... posix checking if threads have different pids (pthreads on linux)... no checking if want OPAL thread support... undef checking if want fault tolerance thread... Disabled (fault tolerance disabled --without-ft) checking if want MPI_THREAD_MULTIPLE support... Disabled checking whether ln -s works... yes checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking dependency style of gcc... (cached) gcc3 checking for flex... no checking for lex... no basename: extra operand `--run' Try `basename --help' for more information. checking for flavor of ps to use... ps -A -o fname,pid,user checking if build filesystem is case sensitive... yes checking if configuring for case sensitive filesystem... yes checking whether RLIMIT_NPROC is declared... yes checking whether RLIMIT_MEMLOCK is declared... yes ============================================================================ == Modular Component Architecture (MCA) setup ============================================================================ checking for subdir args... '--disable-mpi-f90' '--without-sge' '--without-slurm' '--with-libltdl=external' '--with-hwloc=' '--with-wrapper-ldflags=-L/usr/pkg/lib -R/usr/pkg/lib' 'OPAL_HAVE_LTDL_ADVISE=0' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include' 'LDFLAGS=-L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include' 'F77=f77' 'FFLAGS=-O' 'FC=f77' 'PKG_CONFIG=' ==> Pre-emptively configuring the hwloc framework to satisfy dependencies. +++ Configuring MCA framework hwloc checking for no configure components in framework hwloc... checking for m4 configure components in framework hwloc... hwloc132, external --- MCA component hwloc:hwloc132 (m4 configuration macro) checking for MCA component hwloc:hwloc132 compile mode... static checking hwloc building mode... embedded configure: hwloc builddir: /tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6/opal/mca/hwloc/hwloc132/hwloc configure: hwloc srcdir: /tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6/opal/mca/hwloc/hwloc132/hwloc checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... opal/mca/hwloc/hwloc132/hwloc/ checking for hwloc symbol prefix... opal_hwloc132_ checking size of void *... (cached) 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for strncasecmp... yes checking whether function strncasecmp is declared... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking for sys/mman.h... (cached) yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for main in -lgdi32... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking for fabsf in -lm... yes checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... (cached) yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking for sysctl... yes checking for sysctlbyname... no checking for pthread_t... yes checking whether function sched_setaffinity is declared... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working _syscall3... no checking for KERRIGHED... cannot check without pkg-config checking for lib... no checking for bash... /bin/sh checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking for malloc.h... (cached) yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... (cached) yes checking for sys/utsname.h... (cached) yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for library containing pthread_getthrds_np... no checking numaif.h usability... no checking numaif.h presence... no checking for numaif.h... no checking for cpuid... yes checking whether hwloc configure succeeded... yes checking if MCA component hwloc:hwloc132 can compile... yes --- MCA component hwloc:external (m4 configuration macro) checking for MCA component hwloc:external compile mode... static checking if MCA component hwloc:external can compile... no checking for winning hwloc component header file... opal/mca/hwloc/hwloc132/hwloc132.h checking for winning hwloc component additional CPPFLAGS... -I/tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6/opal/mca/hwloc/hwloc132/hwloc/include checking for winning hwloc component additional LDFLAGS... none checking for winning hwloc component additional LIBS... none checking for winning hwloc component additional wrapper CPPFLAGS... none checking for winning hwloc component additional wrapper LDFLAGS... none checking for winning hwloc component additional wrapper LIBS... -lm <== Pre-emptive hwloc framework configuration complete. <== We now return you to your regularly scheduled programming. checking __NetBSD__... no checking __FreeBSD__... no checking __OpenBSD__... no checking __DragonFly__... no checking __386BSD__... no checking __bsdi__... no checking __APPLE__... no checking __linux__... yes checking __sun__... no checking for struct sockaddr_in... (cached) yes checking which components should be disabled... checking which components should be direct-linked into the library... checking which components should be run-time loadable... all checking which components should be static... none checking for projects containing MCA frameworks... opal, orte, ompi *** Configuring MCA for opal checking for frameworks for opal... backtrace, carto, crs, hwloc, installdirs, maffinity, memchecker, memcpy, memory, paffinity, pstat, shmem, sysinfo, timer +++ Configuring MCA framework backtrace checking for no configure components in framework backtrace... checking for m4 configure components in framework backtrace... execinfo, printstack, darwin, none --- MCA component backtrace:execinfo (m4 configuration macro) checking for MCA component backtrace:execinfo compile mode... static checking for execinfo.h... (cached) yes checking if we need -lexecinfo for backtrace... no checking for backtrace... yes checking if MCA component backtrace:execinfo can compile... yes --- MCA component backtrace:printstack (m4 configuration macro) checking for MCA component backtrace:printstack compile mode... static checking ucontext.h usability... yes checking ucontext.h presence... yes checking for ucontext.h... yes checking for printstack... no checking if MCA component backtrace:printstack can compile... no --- MCA component backtrace:darwin (m4 configuration macro) checking for MCA component backtrace:darwin compile mode... static checking for vm_read_overwrite... no checking if MCA component backtrace:darwin can compile... no --- MCA component backtrace:none (m4 configuration macro) checking for MCA component backtrace:none compile mode... static checking if MCA component backtrace:none can compile... no +++ Configuring MCA framework carto checking for no configure components in framework carto... auto_detect, file checking for m4 configure components in framework carto... --- MCA component carto:auto_detect (no configuration) checking for MCA component carto:auto_detect compile mode... dso checking if MCA component carto:auto_detect can compile... yes --- MCA component carto:file (no configuration) checking for MCA component carto:file compile mode... dso checking if MCA component carto:file can compile... yes +++ Configuring MCA framework crs checking for no configure components in framework crs... none checking for m4 configure components in framework crs... blcr, self --- MCA component crs:none (no configuration) checking for MCA component crs:none compile mode... dso checking if MCA component crs:none can compile... yes --- MCA component crs:blcr (m4 configuration macro) checking for MCA component crs:blcr compile mode... dso checking --with-blcr value... simple ok (unspecified) checking --with-blcr-libdir value... simple ok (unspecified) checking if MCA component crs:blcr can compile... no --- MCA component crs:self (m4 configuration macro) checking for MCA component crs:self compile mode... dso checking if MCA component crs:self can compile... no +++ Configuring MCA framework installdirs checking for no configure components in framework installdirs... checking for m4 configure components in framework installdirs... env, config, windows --- MCA component installdirs:env (m4 configuration macro) checking for MCA component installdirs:env compile mode... static checking if MCA component installdirs:env can compile... yes --- MCA component installdirs:config (m4 configuration macro) checking for MCA component installdirs:config compile mode... static checking if MCA component installdirs:config can compile... yes --- MCA component installdirs:windows (m4 configuration macro) checking for MCA component installdirs:windows compile mode... static checking for working RegOpenKeyEx... no checking if MCA component installdirs:windows can compile... no +++ Configuring MCA framework maffinity checking for no configure components in framework maffinity... first_use checking for m4 configure components in framework maffinity... hwloc --- MCA component maffinity:first_use (no configuration) checking for MCA component maffinity:first_use compile mode... dso checking if MCA component maffinity:first_use can compile... yes --- MCA component maffinity:hwloc (m4 configuration macro) checking for MCA component maffinity:hwloc compile mode... dso checking if hwloc is enabled... yes checking if MCA component maffinity:hwloc can compile... yes +++ Pre-configuring the framework memchecker checking if --enable-memchecker was specified... no (adding "memchecker" to --enable-mca-no-build list) +++ Configuring MCA framework memchecker checking for no configure components in framework memchecker... checking for m4 configure components in framework memchecker... valgrind --- MCA component memchecker:valgrind (m4 configuration macro) checking for MCA component memchecker:valgrind compile mode... static checking --with-valgrind value... simple ok (unspecified) checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no configure: WARNING: valgrind.h not found configure: WARNING: Cannot compile this component checking if MCA component memchecker:valgrind can compile... no +++ Configuring MCA framework memcpy checking for no configure components in framework memcpy... checking for m4 configure components in framework memcpy... +++ Configuring MCA framework memory checking for no configure components in framework memory... checking for m4 configure components in framework memory... linux, malloc_solaris --- MCA component memory:linux (m4 configuration macro) checking for MCA component memory:linux compile mode... static checking operating system... x86_64-unknown-linux-gnu -- supported checking for malloc.h... (cached) yes checking whether __malloc_initialize_hook is declared... yes checking whether sbrk is declared... yes checking syscall.h usability... yes checking syscall.h presence... yes checking for syscall.h... yes checking for syscall... yes checking for __munmap... no checking for __mmap... no checking for dlsym in -ldl... yes checking for dlsym... yes checking linux/ummunotify.h usability... no checking linux/ummunotify.h presence... no checking for linux/ummunotify.h... no checking for stropts.h... (cached) yes checking if MCA component memory:linux can compile... yes --- MCA component memory:malloc_solaris (m4 configuration macro) checking for MCA component memory:malloc_solaris compile mode... static checking for Solaris... no checking if MCA component memory:malloc_solaris can compile... no +++ Configuring MCA framework paffinity checking for no configure components in framework paffinity... checking for m4 configure components in framework paffinity... hwloc, test --- MCA component paffinity:hwloc (m4 configuration macro) checking for MCA component paffinity:hwloc compile mode... dso checking if hwloc is enabled... yes checking if MCA component paffinity:hwloc can compile... yes --- MCA component paffinity:test (m4 configuration macro) checking for MCA component paffinity:test compile mode... dso checking if this is an --enable-debug build... no (component disabled) checking if MCA component paffinity:test can compile... no +++ Configuring MCA framework pstat checking for no configure components in framework pstat... checking for m4 configure components in framework pstat... linux, darwin --- MCA component pstat:linux (m4 configuration macro) checking for MCA component pstat:linux compile mode... dso checking whether HZ is declared... yes checking if MCA component pstat:linux can compile... yes --- MCA component pstat:darwin (m4 configuration macro) checking for MCA component pstat:darwin compile mode... dso checking for mach/mach_host.h... (cached) no checking if MCA component pstat:darwin can compile... no +++ Configuring MCA framework shmem checking for no configure components in framework shmem... checking for m4 configure components in framework shmem... mmap, posix, sysv, windows --- MCA component shmem:mmap (m4 configuration macro) checking for MCA component shmem:mmap compile mode... dso checking if want mmap shared memory support... yes checking for library containing mmap... none required checking if MCA component shmem:mmap can compile... yes --- MCA component shmem:posix (m4 configuration macro) checking for MCA component shmem:posix compile mode... dso checking if want POSIX shared memory support... yes checking for library containing shm_open... -lrt checking if MCA component shmem:posix can compile... yes --- MCA component shmem:sysv (m4 configuration macro) checking for MCA component shmem:sysv compile mode... dso checking if want SYSV shared memory support... yes checking for shmget... yes checking if MCA component shmem:sysv can compile... yes --- MCA component shmem:windows (m4 configuration macro) checking for MCA component shmem:windows compile mode... dso checking if want Windows shared memory support... yes checking for CreateFileMapping... no checking if MCA component shmem:windows can compile... no +++ Configuring MCA framework sysinfo checking for no configure components in framework sysinfo... checking for m4 configure components in framework sysinfo... linux, solaris, darwin --- MCA component sysinfo:linux (m4 configuration macro) checking for MCA component sysinfo:linux compile mode... dso checking if we are on Linux... yes checking if MCA component sysinfo:linux can compile... yes --- MCA component sysinfo:solaris (m4 configuration macro) checking for MCA component sysinfo:solaris compile mode... dso configure: *** Open MPI does not support solaris sysinfo on this platform checking if MCA component sysinfo:solaris can compile... no --- MCA component sysinfo:darwin (m4 configuration macro) checking for MCA component sysinfo:darwin compile mode... dso checking for mach/mach_host.h... (cached) no checking if MCA component sysinfo:darwin can compile... no +++ Configuring MCA framework timer checking for no configure components in framework timer... checking for m4 configure components in framework timer... altix, catamount, aix, darwin, solaris, windows, linux --- MCA component timer:altix (m4 configuration macro) checking for MCA component timer:altix compile mode... static checking sn/mmtimer.h usability... no checking sn/mmtimer.h presence... no checking for sn/mmtimer.h... no checking if MCA component timer:altix can compile... no --- MCA component timer:catamount (m4 configuration macro) checking for MCA component timer:catamount compile mode... static checking catamount/dclock.h usability... no checking catamount/dclock.h presence... no checking for catamount/dclock.h... no checking if MCA component timer:catamount can compile... no --- MCA component timer:aix (m4 configuration macro) checking for MCA component timer:aix compile mode... static checking for time_base_to_time... no checking if MCA component timer:aix can compile... no --- MCA component timer:darwin (m4 configuration macro) checking for MCA component timer:darwin compile mode... static checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for mach_absolute_time... no checking if MCA component timer:darwin can compile... no --- MCA component timer:solaris (m4 configuration macro) checking for MCA component timer:solaris compile mode... static checking for gethrtime... no checking if MCA component timer:solaris can compile... no --- MCA component timer:windows (m4 configuration macro) checking for MCA component timer:windows compile mode... static checking if MCA component timer:windows can compile... no --- MCA component timer:linux (m4 configuration macro) checking for MCA component timer:linux compile mode... static checking if MCA component timer:linux can compile... yes *** Configuring MCA for orte checking for frameworks for orte... errmgr, ess, filem, grpcomm, iof, notifier, odls, oob, plm, ras, rmaps, rmcast, rml, routed, snapc +++ Configuring MCA framework errmgr checking for no configure components in framework errmgr... default checking for m4 configure components in framework errmgr... --- MCA component errmgr:default (no configuration) checking for MCA component errmgr:default compile mode... dso checking if MCA component errmgr:default can compile... yes +++ Configuring MCA framework ess checking for no configure components in framework ess... checking for m4 configure components in framework ess... portals_utcp, cnos, alps, env, hnp, lsf, pmi, singleton, slave, slurm, slurmd, tm, tool --- MCA component ess:portals_utcp (m4 configuration macro) checking for MCA component ess:portals_utcp compile mode... dso checking --with-portals value... simple ok (unspecified) checking for PtlGetRank... no checking if MCA component ess:portals_utcp can compile... no --- MCA component ess:cnos (m4 configuration macro) checking for MCA component ess:cnos compile mode... dso checking for cnos_get_rank... no checking if MCA component ess:cnos can compile... no --- MCA component ess:alps (m4 configuration macro) checking for MCA component ess:alps compile mode... dso checking for catamount/cnos_mpi_os.h... no checking for cnos_mpi_os.h... no checking if MCA component ess:alps can compile... no --- MCA component ess:env (m4 configuration macro) checking for MCA component ess:env compile mode... dso checking if MCA component ess:env can compile... yes --- MCA component ess:hnp (m4 configuration macro) checking for MCA component ess:hnp compile mode... dso checking if MCA component ess:hnp can compile... yes --- MCA component ess:lsf (m4 configuration macro) checking for MCA component ess:lsf compile mode... dso checking --with-lsf value... simple ok (unspecified) checking --with-lsf-libdir value... simple ok (unspecified) checking for LSF dir... compiler default checking for LSF library dir... linker default checking lsf/lsbatch.h usability... no checking lsf/lsbatch.h presence... no checking for lsf/lsbatch.h... no checking if MCA component ess:lsf can compile... no --- MCA component ess:pmi (m4 configuration macro) checking for MCA component ess:pmi compile mode... dso checking if user requested PMI support... no checking if MCA component ess:pmi can compile... no --- MCA component ess:singleton (m4 configuration macro) checking for MCA component ess:singleton compile mode... dso checking if MCA component ess:singleton can compile... yes --- MCA component ess:slave (m4 configuration macro) checking for MCA component ess:slave compile mode... dso checking if MCA component ess:slave can compile... yes --- MCA component ess:slurm (m4 configuration macro) checking for MCA component ess:slurm compile mode... dso checking if MCA component ess:slurm can compile... no --- MCA component ess:slurmd (m4 configuration macro) checking for MCA component ess:slurmd compile mode... dso checking if MCA component ess:slurmd can compile... no --- MCA component ess:tm (m4 configuration macro) checking for MCA component ess:tm compile mode... dso checking --with-tm value... simple ok (unspecified) checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component ess:tm can compile... no --- MCA component ess:tool (m4 configuration macro) checking for MCA component ess:tool compile mode... dso checking if MCA component ess:tool can compile... yes +++ Configuring MCA framework filem checking for no configure components in framework filem... rsh checking for m4 configure components in framework filem... --- MCA component filem:rsh (no configuration) checking for MCA component filem:rsh compile mode... dso checking if MCA component filem:rsh can compile... yes +++ Configuring MCA framework grpcomm checking for no configure components in framework grpcomm... checking for m4 configure components in framework grpcomm... cnos, bad, basic, hier, pmi --- MCA component grpcomm:cnos (m4 configuration macro) checking for MCA component grpcomm:cnos compile mode... dso checking for cnos_barrier... no checking if MCA component grpcomm:cnos can compile... no --- MCA component grpcomm:bad (m4 configuration macro) checking for MCA component grpcomm:bad compile mode... dso checking if MCA component grpcomm:bad can compile... yes --- MCA component grpcomm:basic (m4 configuration macro) checking for MCA component grpcomm:basic compile mode... dso checking if MCA component grpcomm:basic can compile... yes --- MCA component grpcomm:hier (m4 configuration macro) checking for MCA component grpcomm:hier compile mode... dso checking if MCA component grpcomm:hier can compile... yes --- MCA component grpcomm:pmi (m4 configuration macro) checking for MCA component grpcomm:pmi compile mode... dso checking if user requested PMI support... no checking if MCA component grpcomm:pmi can compile... no +++ Configuring MCA framework iof checking for no configure components in framework iof... hnp, orted, tool checking for m4 configure components in framework iof... --- MCA component iof:hnp (no configuration) checking for MCA component iof:hnp compile mode... dso checking if MCA component iof:hnp can compile... yes --- MCA component iof:orted (no configuration) checking for MCA component iof:orted compile mode... dso checking if MCA component iof:orted can compile... yes --- MCA component iof:tool (no configuration) checking for MCA component iof:tool compile mode... dso checking if MCA component iof:tool can compile... yes +++ Configuring MCA framework notifier checking for no configure components in framework notifier... checking for m4 configure components in framework notifier... command, ftb, smtp, syslog --- MCA component notifier:command (m4 configuration macro) checking for MCA component notifier:command compile mode... dso checking for fork... (cached) yes checking for pipe... (cached) yes checking if MCA component notifier:command can compile... yes --- MCA component notifier:ftb (m4 configuration macro) checking for MCA component notifier:ftb compile mode... dso checking libftb.h usability... no checking libftb.h presence... no checking for libftb.h... no checking if MCA component notifier:ftb can compile... no --- MCA component notifier:smtp (m4 configuration macro) checking for MCA component notifier:smtp compile mode... dso checking --with-esmtp value... simple ok (unspecified) checking --with-esmtp-libdir value... simple ok (unspecified) checking libesmtp.h usability... no checking libesmtp.h presence... no checking for libesmtp.h... no checking if MCA component notifier:smtp can compile... no --- MCA component notifier:syslog (m4 configuration macro) checking for MCA component notifier:syslog compile mode... dso checking if MCA component notifier:syslog can compile... yes +++ Configuring MCA framework odls checking for no configure components in framework odls... checking for m4 configure components in framework odls... default, process --- MCA component odls:default (m4 configuration macro) checking for MCA component odls:default compile mode... dso checking for fork... (cached) yes checking if MCA component odls:default can compile... yes --- MCA component odls:process (m4 configuration macro) checking for MCA component odls:process compile mode... dso checking for CreateProcess... no checking if MCA component odls:process can compile... no +++ Configuring MCA framework oob checking for no configure components in framework oob... checking for m4 configure components in framework oob... tcp --- MCA component oob:tcp (m4 configuration macro) checking for MCA component oob:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component oob:tcp can compile... yes +++ Configuring MCA framework plm checking for no configure components in framework plm... checking for m4 configure components in framework plm... alps, ccp, lsf, process, rsh, slurm, tm --- MCA component plm:alps (m4 configuration macro) checking for MCA component plm:alps compile mode... dso checking if MCA component plm:alps can compile... no --- MCA component plm:ccp (m4 configuration macro) checking for MCA component plm:ccp compile mode... dso checking if MCA component plm:ccp can compile... no --- MCA component plm:lsf (m4 configuration macro) checking for MCA component plm:lsf compile mode... dso checking --with-lsf value... simple ok (unspecified) checking --with-lsf-libdir value... simple ok (unspecified) checking for LSF dir... compiler default checking for LSF library dir... linker default checking lsf/lsbatch.h usability... no checking lsf/lsbatch.h presence... no checking for lsf/lsbatch.h... no checking if MCA component plm:lsf can compile... no --- MCA component plm:process (m4 configuration macro) checking for MCA component plm:process compile mode... dso checking if MCA component plm:process can compile... no --- MCA component plm:rsh (m4 configuration macro) checking for MCA component plm:rsh compile mode... dso checking for fork... (cached) yes checking if MCA component plm:rsh can compile... yes --- MCA component plm:slurm (m4 configuration macro) checking for MCA component plm:slurm compile mode... dso checking if MCA component plm:slurm can compile... no --- MCA component plm:tm (m4 configuration macro) checking for MCA component plm:tm compile mode... dso checking --with-tm value... simple ok (unspecified) checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component plm:tm can compile... no +++ Configuring MCA framework ras checking for no configure components in framework ras... cm checking for m4 configure components in framework ras... alps, ccp, gridengine, loadleveler, lsf, slurm, tm --- MCA component ras:cm (no configuration) checking for MCA component ras:cm compile mode... dso checking if MCA component ras:cm can compile... yes --- MCA component ras:alps (m4 configuration macro) checking for MCA component ras:alps compile mode... dso checking if MCA component ras:alps can compile... no --- MCA component ras:ccp (m4 configuration macro) checking for MCA component ras:ccp compile mode... dso checking if MCA component ras:ccp can compile... no --- MCA component ras:gridengine (m4 configuration macro) checking for MCA component ras:gridengine compile mode... dso checking if user requested SGE build... no checking if MCA component ras:gridengine can compile... no --- MCA component ras:loadleveler (m4 configuration macro) checking for MCA component ras:loadleveler compile mode... dso checking if MCA component ras:loadleveler can compile... yes --- MCA component ras:lsf (m4 configuration macro) checking for MCA component ras:lsf compile mode... dso checking --with-lsf value... simple ok (unspecified) checking --with-lsf-libdir value... simple ok (unspecified) checking for LSF dir... compiler default checking for LSF library dir... linker default checking lsf/lsbatch.h usability... no checking lsf/lsbatch.h presence... no checking for lsf/lsbatch.h... no checking if MCA component ras:lsf can compile... no --- MCA component ras:slurm (m4 configuration macro) checking for MCA component ras:slurm compile mode... dso checking if MCA component ras:slurm can compile... no --- MCA component ras:tm (m4 configuration macro) checking for MCA component ras:tm compile mode... dso checking --with-tm value... simple ok (unspecified) checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component ras:tm can compile... no +++ Configuring MCA framework rmaps checking for no configure components in framework rmaps... load_balance, rank_file, resilient, round_robin, seq, topo checking for m4 configure components in framework rmaps... --- MCA component rmaps:load_balance (no configuration) checking for MCA component rmaps:load_balance compile mode... dso checking if MCA component rmaps:load_balance can compile... yes --- MCA component rmaps:rank_file (no configuration) checking for MCA component rmaps:rank_file compile mode... dso checking if MCA component rmaps:rank_file can compile... yes --- MCA component rmaps:resilient (no configuration) checking for MCA component rmaps:resilient compile mode... dso checking if MCA component rmaps:resilient can compile... yes --- MCA component rmaps:round_robin (no configuration) checking for MCA component rmaps:round_robin compile mode... dso checking if MCA component rmaps:round_robin can compile... yes --- MCA component rmaps:seq (no configuration) checking for MCA component rmaps:seq compile mode... dso checking if MCA component rmaps:seq can compile... yes --- MCA component rmaps:topo (no configuration) checking for MCA component rmaps:topo compile mode... dso checking if MCA component rmaps:topo can compile... yes +++ Configuring MCA framework rmcast checking for no configure components in framework rmcast... tcp, udp checking for m4 configure components in framework rmcast... --- MCA component rmcast:tcp (no configuration) checking for MCA component rmcast:tcp compile mode... dso checking if MCA component rmcast:tcp can compile... yes --- MCA component rmcast:udp (no configuration) checking for MCA component rmcast:udp compile mode... dso checking if MCA component rmcast:udp can compile... yes +++ Configuring MCA framework rml checking for no configure components in framework rml... oob checking for m4 configure components in framework rml... ftrm --- MCA component rml:oob (no configuration) checking for MCA component rml:oob compile mode... dso checking if MCA component rml:oob can compile... yes --- MCA component rml:ftrm (m4 configuration macro) checking for MCA component rml:ftrm compile mode... dso checking if MCA component rml:ftrm can compile... no +++ Configuring MCA framework routed checking for no configure components in framework routed... binomial, cm, direct, linear, radix, slave checking for m4 configure components in framework routed... --- MCA component routed:binomial (no configuration) checking for MCA component routed:binomial compile mode... dso checking if MCA component routed:binomial can compile... yes --- MCA component routed:cm (no configuration) checking for MCA component routed:cm compile mode... dso checking if MCA component routed:cm can compile... yes --- MCA component routed:direct (no configuration) checking for MCA component routed:direct compile mode... dso checking if MCA component routed:direct can compile... yes --- MCA component routed:linear (no configuration) checking for MCA component routed:linear compile mode... dso checking if MCA component routed:linear can compile... yes --- MCA component routed:radix (no configuration) checking for MCA component routed:radix compile mode... dso checking if MCA component routed:radix can compile... yes --- MCA component routed:slave (no configuration) checking for MCA component routed:slave compile mode... dso checking if MCA component routed:slave can compile... yes +++ Configuring MCA framework snapc checking for no configure components in framework snapc... checking for m4 configure components in framework snapc... full --- MCA component snapc:full (m4 configuration macro) checking for MCA component snapc:full compile mode... dso checking if MCA component snapc:full can compile... no *** Configuring MCA for ompi checking for frameworks for ompi... allocator, bml, btl, coll, common, crcp, dpm, io, mpool, mtl, op, osc, pml, pubsub, rcache, topo +++ Configuring MCA framework allocator checking for no configure components in framework allocator... basic, bucket checking for m4 configure components in framework allocator... --- MCA component allocator:basic (no configuration) checking for MCA component allocator:basic compile mode... dso checking if MCA component allocator:basic can compile... yes --- MCA component allocator:bucket (no configuration) checking for MCA component allocator:bucket compile mode... dso checking if MCA component allocator:bucket can compile... yes +++ Configuring MCA framework bml checking for no configure components in framework bml... r2 checking for m4 configure components in framework bml... --- MCA component bml:r2 (no configuration) checking for MCA component bml:r2 compile mode... dso checking if MCA component bml:r2 can compile... yes +++ Configuring MCA framework btl checking for no configure components in framework btl... self checking for m4 configure components in framework btl... elan, mx, ofud, openib, portals, sctp, sm, tcp, udapl --- MCA component btl:self (no configuration) checking for MCA component btl:self compile mode... dso checking if MCA component btl:self can compile... yes --- MCA component btl:elan (m4 configuration macro) checking for MCA component btl:elan compile mode... dso checking --with-elan value... simple ok (unspecified) checking --with-elan-libdir value... simple ok (unspecified) checking elan/elan.h usability... no checking elan/elan.h presence... no checking for elan/elan.h... no checking if MCA component btl:elan can compile... no --- MCA component btl:mx (m4 configuration macro) checking for MCA component btl:mx compile mode... dso checking --with-mx value... simple ok (unspecified) checking --with-mx-libdir value... simple ok (unspecified) checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component btl:mx can compile... no --- MCA component btl:ofud (m4 configuration macro) checking for MCA component btl:ofud compile mode... dso checking --with-openib value... simple ok (unspecified) checking --with-openib-libdir value... simple ok (unspecified) checking if want to add padding to the openib control header... no checking for fcntl.h... (cached) yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking if ConnectX XRC support is enabled... no checking if dynamic SL is enabled... no checking if OpenFabrics RDMACM support is enabled... no checking if MCA component btl:ofud can compile... no --- MCA component btl:openib (m4 configuration macro) checking for MCA component btl:openib compile mode... dso checking --with-openib value... simple ok (unspecified) checking --with-openib-libdir value... simple ok (unspecified) checking if want to add padding to the openib control header... no checking for fcntl.h... (cached) yes checking for sys/poll.h... (cached) yes checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking if ConnectX XRC support is enabled... no checking if dynamic SL is enabled... no checking if OpenFabrics RDMACM support is enabled... no checking for thread support (needed for rdmacm)... posix no checking if MCA component btl:openib can compile... no --- MCA component btl:portals (m4 configuration macro) checking for MCA component btl:portals compile mode... dso checking --with-portals value... simple ok (unspecified) checking for Portals configuration... utcp checking portals3.h usability... no checking portals3.h presence... no checking for portals3.h... no checking for catamount/cnos_mpi_os.h... (cached) no checking for cnos_mpi_os.h... (cached) no checking if MCA component btl:portals can compile... no --- MCA component btl:sctp (m4 configuration macro) checking for MCA component btl:sctp compile mode... dso checking --with-sctp value... simple ok (unspecified) checking --with-sctp-libdir value... simple ok (unspecified) checking netinet/sctp.h usability... no checking netinet/sctp.h presence... no checking for netinet/sctp.h... no checking if MCA component btl:sctp can compile... no --- MCA component btl:sm (m4 configuration macro) checking for MCA component btl:sm compile mode... dso checking --with-knem value... simple ok (unspecified) checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no checking if MCA component btl:sm can compile... yes --- MCA component btl:tcp (m4 configuration macro) checking for MCA component btl:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component btl:tcp can compile... yes --- MCA component btl:udapl (m4 configuration macro) checking for MCA component btl:udapl compile mode... dso checking --with-udapl value... simple ok (unspecified) checking --with-udapl-libdir value... simple ok (unspecified) configure: WARNING: On Linux and --with-udapl was not specified configure: WARNING: Not building the udapl BTL checking if MCA component btl:udapl can compile... no +++ Configuring MCA framework coll checking for no configure components in framework coll... basic, hierarch, inter, self, sm, sync, tuned checking for m4 configure components in framework coll... fca --- MCA component coll:basic (no configuration) checking for MCA component coll:basic compile mode... dso checking if MCA component coll:basic can compile... yes --- MCA component coll:hierarch (no configuration) checking for MCA component coll:hierarch compile mode... dso checking if MCA component coll:hierarch can compile... yes --- MCA component coll:inter (no configuration) checking for MCA component coll:inter compile mode... dso checking if MCA component coll:inter can compile... yes --- MCA component coll:self (no configuration) checking for MCA component coll:self compile mode... dso checking if MCA component coll:self can compile... yes --- MCA component coll:sm (no configuration) checking for MCA component coll:sm compile mode... dso checking if MCA component coll:sm can compile... yes --- MCA component coll:sync (no configuration) checking for MCA component coll:sync compile mode... dso checking if MCA component coll:sync can compile... yes --- MCA component coll:tuned (no configuration) checking for MCA component coll:tuned compile mode... dso checking if MCA component coll:tuned can compile... yes --- MCA component coll:fca (m4 configuration macro) checking for MCA component coll:fca compile mode... dso checking --with-fca value... simple ok (unspecified) checking if MCA component coll:fca can compile... no +++ Configuring MCA framework common checking for no configure components in framework common... sm checking for m4 configure components in framework common... mx, portals --- MCA component common:sm (no configuration) checking for MCA component common:sm compile mode... dso checking if MCA component common:sm can compile... yes --- MCA component common:mx (m4 configuration macro) checking for MCA component common:mx compile mode... dso checking --with-mx value... simple ok (unspecified) checking --with-mx-libdir value... simple ok (unspecified) checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component common:mx can compile... no --- MCA component common:portals (m4 configuration macro) checking for MCA component common:portals compile mode... dso checking --with-portals value... simple ok (unspecified) checking for Portals configuration... utcp checking for portals3.h... (cached) no checking if MCA component common:portals can compile... no +++ Configuring MCA framework crcp checking for no configure components in framework crcp... checking for m4 configure components in framework crcp... bkmrk --- MCA component crcp:bkmrk (m4 configuration macro) checking for MCA component crcp:bkmrk compile mode... dso checking if MCA component crcp:bkmrk can compile... no +++ Configuring MCA framework dpm checking for no configure components in framework dpm... orte checking for m4 configure components in framework dpm... --- MCA component dpm:orte (no configuration) checking for MCA component dpm:orte compile mode... dso checking if MCA component dpm:orte can compile... yes +++ Configuring MCA framework io checking for no configure components in framework io... checking for m4 configure components in framework io... romio --- MCA component io:romio (m4 configuration macro) checking for MCA component io:romio compile mode... dso checking if want ROMIO component... yes checking if MPI profiling is enabled... yes *** Configuring ROMIO distribution configure: OMPI configuring in ompi/mca/io/romio/romio configure: running /bin/sh './configure' CFLAGS="-DNDEBUG -O3 -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include -finline-functions -fno-strict-aliasing -pthread" CPPFLAGS="-I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include -I/tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband" FFLAGS="-O" LDFLAGS="-L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 " --enable-shared --disable-static --prefix=/usr/pkg --with-mpi=open_mpi --disable-aio --cache-file=/dev/null --srcdir=. --disable-option-checking Configuring with args CFLAGS=-DNDEBUG -O3 -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include -finline-functions -fno-strict-aliasing -pthread CPPFLAGS=-I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include -I/tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband FFLAGS=-O LDFLAGS=-L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 --enable-shared --disable-static --prefix=/usr/pkg --with-mpi=open_mpi --disable-aio --cache-file=/dev/null --srcdir=. --disable-option-checking checking for Open MPI support files... in Open MPI source tree -- good checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /tmp/pkgsrc/parallel/openmpi/work/.tools/bin/mkdir -p checking for gawk... /usr/bin/awk checking whether make supports nested variables... yes checking for architecture... LINUX configure: WARNING: Unknown architecture ... proceeding anyway ROMIO home directory is /tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6/ompi/mca/io/romio/romio checking for ranlib... ranlib checking for style of include used by make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for memalign... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... 8 checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for unistd.h... (cached) yes checking for large file defines... yes setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/x86_64-unknown-linux-gnu/bin/ld checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 2097152 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-unknown-linux-gnu/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove `conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for : option to produce PIC... checking if : static flag works... no checking if : supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory no checking if : supports -c -o file.o... (cached) no checking whether the : linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate setting CC to gcc setting F77 to : setting TEST_CC to mpicc setting TEST_F77 to mpif77 setting CFLAGS to -DNDEBUG -O3 -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include -finline-functions -fno-strict-aliasing -pthread -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating adio/Makefile config.status: creating adio/ad_bgl/Makefile config.status: creating adio/ad_bglockless/Makefile config.status: creating adio/ad_gridftp/Makefile config.status: creating adio/ad_lustre/Makefile config.status: creating adio/ad_nfs/Makefile config.status: creating adio/ad_ntfs/Makefile config.status: creating adio/ad_panfs/Makefile config.status: creating adio/ad_pfs/Makefile config.status: creating adio/ad_pvfs/Makefile config.status: creating adio/ad_pvfs2/Makefile config.status: creating adio/ad_sfs/Makefile config.status: creating adio/ad_testfs/Makefile config.status: creating adio/ad_ufs/Makefile config.status: creating adio/ad_xfs/Makefile config.status: creating adio/ad_zoidfs/Makefile config.status: creating adio/common/Makefile config.status: creating adio/include/Makefile config.status: creating doc/Makefile config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating include/Makefile config.status: creating mpi-io/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating test/runtests config.status: creating util/romioinstall config.status: creating mpi-io/glue/openmpi/Makefile config.status: creating util/Makefile config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory config.status: executing default-1 commands configure: /bin/sh './configure' succeeded for ompi/mca/io/romio/romio ROMIO distribution configured successfully checking if MCA component io:romio can compile... yes +++ Configuring MCA framework mpool checking for no configure components in framework mpool... fake, rdma, sm checking for m4 configure components in framework mpool... --- MCA component mpool:fake (no configuration) checking for MCA component mpool:fake compile mode... dso checking if MCA component mpool:fake can compile... yes --- MCA component mpool:rdma (no configuration) checking for MCA component mpool:rdma compile mode... dso checking if MCA component mpool:rdma can compile... yes --- MCA component mpool:sm (no configuration) checking for MCA component mpool:sm compile mode... dso checking if MCA component mpool:sm can compile... yes +++ Configuring MCA framework mtl checking for no configure components in framework mtl... checking for m4 configure components in framework mtl... mx, mxm, portals, psm --- MCA component mtl:mx (m4 configuration macro) checking for MCA component mtl:mx compile mode... dso checking --with-mx value... simple ok (unspecified) checking --with-mx-libdir value... simple ok (unspecified) checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component mtl:mx can compile... no --- MCA component mtl:mxm (m4 configuration macro) checking for MCA component mtl:mxm compile mode... dso checking --with-mxm value... simple ok (unspecified) checking --with-mxm-libdir value... simple ok (unspecified) checking mxm/api/mxm_api.h usability... no checking mxm/api/mxm_api.h presence... no checking for mxm/api/mxm_api.h... no checking if MCA component mtl:mxm can compile... no --- MCA component mtl:portals (m4 configuration macro) checking for MCA component mtl:portals compile mode... dso checking --with-portals value... simple ok (unspecified) checking for Portals configuration... utcp checking for portals3.h... (cached) no checking if MCA component mtl:portals can compile... no --- MCA component mtl:psm (m4 configuration macro) checking for MCA component mtl:psm compile mode... dso checking --with-psm value... simple ok (unspecified) checking --with-psm-libdir value... simple ok (unspecified) checking psm.h usability... no checking psm.h presence... no checking for psm.h... no checking if MCA component mtl:psm can compile... no +++ Configuring MCA framework op checking for no configure components in framework op... checking for m4 configure components in framework op... +++ Configuring MCA framework osc checking for no configure components in framework osc... pt2pt, rdma checking for m4 configure components in framework osc... --- MCA component osc:pt2pt (no configuration) checking for MCA component osc:pt2pt compile mode... dso checking if MCA component osc:pt2pt can compile... yes --- MCA component osc:rdma (no configuration) checking for MCA component osc:rdma compile mode... dso checking if MCA component osc:rdma can compile... yes +++ Configuring MCA framework pml checking for no configure components in framework pml... bfo, cm, csum, ob1 checking for m4 configure components in framework pml... crcpw, v --- MCA component pml:bfo (no configuration) checking for MCA component pml:bfo compile mode... dso checking if MCA component pml:bfo can compile... yes --- MCA component pml:cm (no configuration) checking for MCA component pml:cm compile mode... dso checking if MCA component pml:cm can compile... yes --- MCA component pml:csum (no configuration) checking for MCA component pml:csum compile mode... dso checking if MCA component pml:csum can compile... yes --- MCA component pml:ob1 (no configuration) checking for MCA component pml:ob1 compile mode... dso checking if MCA component pml:ob1 can compile... yes --- MCA component pml:crcpw (m4 configuration macro) checking for MCA component pml:crcpw compile mode... dso checking if MCA component pml:crcpw can compile... no --- MCA component pml:v (m4 configuration macro) checking for MCA component pml:v compile mode... dso +++ Configuring MCA framework vprotocol checking for no configure components in framework vprotocol... pessimist checking for m4 configure components in framework vprotocol... --- MCA component vprotocol:pessimist (no configuration) checking for MCA component vprotocol:pessimist compile mode... dso checking if MCA component vprotocol:pessimist can compile... yes checking if MCA component pml:v can compile... yes +++ Configuring MCA framework pubsub checking for no configure components in framework pubsub... orte checking for m4 configure components in framework pubsub... pmi --- MCA component pubsub:orte (no configuration) checking for MCA component pubsub:orte compile mode... dso checking if MCA component pubsub:orte can compile... yes --- MCA component pubsub:pmi (m4 configuration macro) checking for MCA component pubsub:pmi compile mode... dso checking if user requested PMI support... no checking if MCA component pubsub:pmi can compile... no +++ Configuring MCA framework rcache checking for no configure components in framework rcache... vma checking for m4 configure components in framework rcache... --- MCA component rcache:vma (no configuration) checking for MCA component rcache:vma compile mode... dso checking if MCA component rcache:vma can compile... yes +++ Configuring MCA framework topo checking for no configure components in framework topo... unity checking for m4 configure components in framework topo... --- MCA component topo:unity (no configuration) checking for MCA component topo:unity compile mode... dso checking if MCA component topo:unity can compile... yes ============================================================================ == Extended MPI interfaces setup ============================================================================ checking which extension components should be enabled... checking for projects containing EXT frameworks... ompi *** Configuring EXT for ompi checking for frameworks for ompi... mpiext +++ Configuring EXT framework mpiext checking for no configure components in framework mpiext... checking for m4 configure components in framework mpiext... affinity, example --- EXT component mpiext:affinity (m4 configuration macro) checking if EXT component mpiext:affinity can compile... no --- EXT component mpiext:example (m4 configuration macro) checking if EXT component mpiext:example can compile... no ============================================================================ == Contributed software setup ============================================================================ *** Configuring contributed software packages checking which contributed software packages should be disabled... --- libompitrace (m4 configuration macro) checking if contributed component libompitrace can compile... yes --- vt (m4 configuration macro) checking whether PMPI is enabled... yes checking whether C++ STL is suitable for vt... yes configure: OMPI configuring in ompi/contrib/vt/vt configure: running /bin/sh './configure' --disable-option-checking --with-openmpi-inside '--disable-mpi-f90' '--without-sge' '--without-slurm' '--with-libltdl=external' '--with-hwloc=' '--with-wrapper-ldflags=-L/usr/pkg/lib -R/usr/pkg/lib' 'OPAL_HAVE_LTDL_ADVISE=0' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include' 'LDFLAGS=-L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include' 'F77=f77' 'FFLAGS=-O' 'FC=f77' 'PKG_CONFIG=' --cache-file=/dev/null --srcdir=. --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /tmp/pkgsrc/parallel/openmpi/work/.tools/bin/mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for platform... linux checking for options file... no configure: builddir: /tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6/ompi/contrib/vt/vt configure: srcdir: /tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6/ompi/contrib/vt/vt checking if build filesystem is case sensitive... yes checking for x86_64-unknown-linux-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking dependency style of gcc... gcc3 checking for x86_64-unknown-linux-g77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking for x86_64-unknown-linux-gfortran... f77 checking whether we are using the GNU Fortran compiler... yes checking whether f77 accepts -g... yes checking for ar... ar checking whether ln -s works... yes checking for gawk... (cached) /usr/bin/awk checking for java... no checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking fnmatch.h usability... yes checking fnmatch.h presence... yes checking for fnmatch.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for size_t... yes checking size of void*... 8 checking size of int... 4 checking size of long... 8 checking size of mode_t... 4 checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for strdup... yes checking for memmove... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/x86_64-unknown-linux-gnu/bin/ld checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... (cached) 2097152 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-unknown-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-unknown-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-unknown-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-unknown-linux-ar... (cached) ar checking for archiver @FILE support... @ checking for x86_64-unknown-linux-strip... no checking for strip... strip checking for x86_64-unknown-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for x86_64-unknown-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove `conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: selected timer: TIMER_CYCLE_COUNTER configure: global timer: no checking for compiler instrumentation... gnu checking for dlfcn.h... (cached) yes checking whether linking with -ldl works... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking BPatch.h usability... no checking BPatch.h presence... no checking for BPatch.h... no configure: error: no BPatch.h found; check path for Dyninst package first... checking for tau_instrumentor... no configure: error: no tau_instrumentor found; check path for PDToolkit first... configure: we are configuring inside Open MPI; presetting cache to skip MPI related tests checking for mpicc... (cached) gcc checking for mpicxx... (cached) g++ checking whether MPI_IN_PLACE is declared... (cached) yes checking for MPI_Add_error_class... (cached) yes checking for MPI_Add_error_code... (cached) yes checking for MPI_Add_error_string... (cached) yes checking for MPI_Finalized... (cached) yes checking for MPI_Type_create_f90_complex... (cached) yes checking for MPI_Type_create_f90_integer... (cached) yes checking for MPI_Type_create_f90_real... (cached) yes checking for MPI_Type_match_size... (cached) yes checking for PMPI_Win_test... (cached) yes checking for PMPI_Win_lock... (cached) yes checking for PMPI_Win_unlock... (cached) yes checking for MPI_Register_datarep... (cached) yes checking for PMPI_File_read_ordered... (cached) yes checking for PMPI_File_read_ordered_begin... (cached) yes checking for PMPI_File_write_ordered... (cached) yes checking for PMPI_File_write_ordered_begin... (cached) yes configure: error: MPI Correctness Checking support cannot be built inside Open MPI checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking whether we need to link -lm to get math functions... yes checking f2c.h usability... yes checking f2c.h presence... yes checking for f2c.h... yes checking for clapack.h... no configure: error: no clapack.h found; check path for CLAPACK package first... checking for C++ runtime library... -lstdc++ checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_condattr_getpshared... yes checking for pthread_condattr_setpshared... yes checking for pthread_mutexattr_getpshared... yes checking for pthread_mutexattr_setpshared... yes checking for OpenMP flag of C compiler... unknown checking whether we can build shared libraries... yes checking jvmti.h usability... no checking jvmti.h presence... no checking for jvmti.h... no configure: error: no jvmti.h found; check path for JVMTI package first... checking papi.h usability... no checking papi.h presence... no checking for papi.h... no configure: error: no papi.h found; check path for PAPI package first... checking libcpc.h usability... no checking libcpc.h presence... no checking for libcpc.h... no configure: error: no libcpc.h found; check path for CPC package first... checking whether we are on a NEC SX... no checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for getrusage... yes checking whether RUSAGE_THREAD is declared... yes checking for dlfcn.h... (cached) yes checking whether linking with -ldl works... yes checking whether RTLD_DEFAULT is declared... (cached) yes checking whether RTLD_NEXT is declared... (cached) yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for __malloc_hook... yes checking for __realloc_hook... yes checking for __free_hook... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sched_getcpu... yes checking whether sched_getcpu works... yes checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no configure: error: no cuda.h found; check path for CUDA Toolkit first... checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no configure: error: no cuda_runtime_api.h found; check path for CUDA Toolkit first... checking cupti.h usability... no checking cupti.h presence... no checking for cupti.h... no configure: error: no cupti.h found; check path for CUPTI package first... checking for dlfcn.h... (cached) yes checking whether linking with -ldl works... yes checking whether RTLD_DEFAULT is declared... (cached) yes checking whether RTLD_NEXT is declared... (cached) yes checking for shared LIBC's pathname... /lib64/libc.so.6 checking whether __errno_location is declared... yes checking ctool/ctool.h usability... no checking ctool/ctool.h presence... no checking for ctool/ctool.h... no configure: error: no ctool/ctool.h found; check path for CTool package first... checking for fork... yes checking for execl... yes checking for execle... yes checking for execlp... yes checking for execv... yes checking for execve... yes checking for execvp... yes checking for system... yes checking for wait... yes checking for waitpid... yes checking for creat64... yes checking for fopen64... yes checking for fseeko... yes checking for fseeko64... yes checking for lseek64... yes checking for fsetpos64... yes checking for open64... yes checking for pread64... yes checking for pwrite64... yes checking for flockfile... yes checking for ftrylockfile... yes checking for funlockfile... yes checking for sync... yes checking for fflush... yes checking for fsync... yes checking for fdatasync... yes checking for lockf... yes checking for __fprintf_chk... yes checking whether __vfprintf_chk is declared... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking whether linking with -lz works... yes configure: configuring in extlib/otf (/tmp/pkgsrc/parallel/openmpi/work/openmpi-1.6/ompi/contrib/vt/vt/extlib/otf) configure: running /bin/sh ./configure --enable-static=yes --enable-shared=yes --with-mpi --with-mpi-lib="-lmpi" --with-zlib-lib="-lz" --prefix="/usr/pkg" --exec-prefix="${prefix}" --bindir="${exec_prefix}/bin" --libdir="${exec_prefix}/lib" --includedir="${prefix}/include/vampirtrace" --docdir="${datarootdir}/doc/otf" --cache-file="/dev/null" --srcdir="." checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /tmp/pkgsrc/parallel/openmpi/work/.tools/bin/mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking for x86_64-unknown-linux-gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/x86_64-unknown-linux-gnu/bin/ld checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 2097152 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-unknown-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-unknown-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-unknown-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-unknown-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-unknown-linux-strip... no checking for strip... strip checking for x86_64-unknown-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for x86_64-unknown-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove `conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether byte ordering is bigendian... no checking for mpicc... gcc checking for mpic++... g++ checking for OpenMP flag of C++ compiler... unknown checking vtf3.h usability... no checking vtf3.h presence... no checking for vtf3.h... no configure: error: no vtf3.h found; check path for VTF3 package first... checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking whether linking with -lm works... yes checking whether we need to link -lm to get math functions... yes checking for pdflatex... no checking for pdftex... no checking for ANSI C header files... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for strdup... yes checking for gettimeofday... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking whether O_NOATIME is declared... yes checking for size_t... yes checking size of long... 8 checking for library containing clock_gettime... -lrt configure: creating ./config.status config.status: creating Makefile config.status: creating vendor/jenkins_hash/Makefile config.status: creating otflib/Makefile config.status: creating otflib/OTF_inttypes_unix.h config.status: creating otfauxlib/Makefile config.status: creating otflib_py/Makefile config.status: creating tools/Makefile config.status: creating tools/otfaux/Makefile config.status: creating tools/otfcompress/Makefile config.status: creating tools/otfconfig/Makefile config.status: creating tools/otfdump/Makefile config.status: creating tools/otfinfo/Makefile config.status: creating tools/otfmerge/Makefile config.status: creating tools/otfmerge/mpi/Makefile config.status: creating tools/otfprofile/Makefile config.status: creating tools/otfprofile/mpi/Makefile config.status: creating tools/otfshrink/Makefile config.status: creating tools/otf2vtf/Makefile config.status: creating tools/vtf2otf/Makefile config.status: creating tests/Makefile config.status: creating tests/hello/Makefile config.status: creating tests/generic_streams/Makefile config.status: creating tests/generic_streams-mpi/Makefile config.status: creating tests/progress/Makefile config.status: creating tests/read_from_buffer/Makefile config.status: creating tests/thumbnail/Makefile config.status: creating docu/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory checking for java... no configure: error: no java found; check path for JAVA package first... checking whether we can build shared libraries... yes configure: setup capabilities of vtrun configure: creating ./config.status config.status: creating Makefile config.status: creating extlib/Makefile config.status: creating util/Makefile config.status: creating util/installdirs_conf.h config.status: creating rfg/Makefile config.status: creating vtlib/Makefile config.status: creating tools/Makefile config.status: creating tools/opari/Makefile config.status: creating tools/opari/tool/Makefile config.status: creating tools/opari/doc/Makefile config.status: creating tools/vtcpcavail/Makefile config.status: creating tools/vtdyn/Makefile config.status: creating tools/vtdyn/dynattlib/Makefile config.status: creating tools/vtfilter/Makefile config.status: creating tools/vtfilter/mpi/Makefile config.status: creating tools/vtjava/Makefile config.status: creating tools/vtjava/vtjava config.status: creating tools/vtlibwrapgen/Makefile config.status: creating tools/vtlibwrapgen/vt_libwrapgen_defs.h config.status: creating tools/vtrun/Makefile config.status: creating tools/vtrun/vtrun config.status: creating tools/vtsetup/Makefile config.status: creating tools/vtsetup/vtsetup config.status: creating tools/vtsetup/vtsetup-config.xml config.status: creating tools/vtsetup/vtsetup-data.xml config.status: creating tools/vtsetup/doc/Makefile config.status: creating tools/vtunify/Makefile config.status: creating tools/vtunify/mpi/Makefile config.status: creating tools/vtwrapper/Makefile config.status: creating tools/vtwrapper/vtcc-wrapper-data.txt config.status: creating tools/vtwrapper/vtc++-wrapper-data.txt config.status: creating tools/vtwrapper/vtf77-wrapper-data.txt config.status: creating tools/vtwrapper/vtf90-wrapper-data.txt config.status: creating tools/vtwrapper/vtnvcc-wrapper-data.txt config.status: creating include/Makefile config.status: creating include/vt_inttypes.h config.status: creating doc/Makefile config.status: creating etc/Makefile config.status: creating config/mpigen/mk_registry.sh config.status: creating config/mpigen/mk_c_wrapper.sh config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory configure: executing MPI wrapper generator configure: /bin/sh './configure' succeeded for ompi/contrib/vt/vt checking if contributed component vt can compile... yes ============================================================================ == Symbol visibility feature ============================================================================ checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) ============================================================================ == Final top-level OMPI configuration ============================================================================ *** Libevent 3rd party event handler checking for ANSI C header files... (cached) yes checking for fcntl.h... (cached) yes checking for stdarg.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for poll.h... (cached) yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking for unistd.h... (cached) yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking for sys/time.h... (cached) yes checking for sys/queue.h... (cached) yes checking sys/event.h usability... no checking sys/event.h presence... no checking for sys/event.h... no checking for sys/ioctl.h... (cached) yes checking sys/devpoll.h usability... no checking sys/devpoll.h presence... no checking for sys/devpoll.h... no checking for TAILQ_FOREACH in sys/queue.h... yes checking for timeradd in sys/time.h... yes checking whether time.h and sys/time.h may both be included... yes checking for gettimeofday... yes checking for vasprintf... (cached) yes checking for fcntl... yes checking for strtoll... yes checking for F_SETFD in fcntl.h... yes checking for select... yes checking for poll... yes checking for epoll_ctl... yes checking for working epoll library interface... yes checking for port_create... no checking for pid_t... yes checking for size_t... yes *** Libtool configuration checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/x86_64-unknown-linux-gnu/bin/ld checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld) is GNU ld... yes checking the maximum length of command line arguments... (cached) 2097152 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-unknown-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-unknown-linux-objdump... (cached) objdump checking how to recognize dependent libraries... pass_all checking for x86_64-unknown-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-unknown-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-unknown-linux-strip... no checking for strip... strip checking for x86_64-unknown-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for x86_64-unknown-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove `conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate *** GNU libltdl setup checking location of libltdl... external copy (unspecified) checking ltdl.h usability... yes checking ltdl.h presence... yes checking for ltdl.h... yes looking for library without search path checking for lt_dlopen in -lltdl... yes checking for lt_dladvise_init... yes *** Compiler flags checking which of CFLAGS are ok for debugger modules... -DNDEBUG -pipe -fstack-protector -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include -fno-strict-aliasing -pthread checking for debugger extra CFLAGS... -g *** Wrapper compiler final setup checking for perl... /usr/pkg/bin/perl checking for OPAL CPPFLAGS... checking for OPAL CFLAGS... -pthread checking for OPAL CXXFLAGS... -pthread checking for OPAL LDFLAGS... -L/usr/pkg/lib -R/usr/pkg/lib checking for OPAL LIBS... -ldl -lm checking for OPAL extra include dirs... checking for ORTE CPPFLAGS... checking for ORTE CXXFLAGS... -pthread checking for ORTE CFLAGS... -pthread checking for ORTE LDFLAGS... -L/usr/pkg/lib -R/usr/pkg/lib checking for ORTE LIBS... -ldl -lm checking for ORTE extra include dirs... checking for OMPI CPPFLAGS... checking for OMPI CFLAGS... -pthread checking for OMPI CXXFLAGS... -pthread checking for OMPI FFLAGS... -pthread checking for OMPI FCFLAGS... -pthread checking for OMPI LDFLAGS... -L/usr/pkg/lib -R/usr/pkg/lib checking for OMPI LIBS... -ldl -lm checking for OMPI extra include dirs... *** Final output configure: creating ./config.status config.status: creating ompi/include/ompi/version.h config.status: creating orte/include/orte/version.h config.status: creating opal/include/opal/version.h config.status: creating opal/mca/hwloc/hwloc132/hwloc/Makefile config.status: creating opal/mca/hwloc/hwloc132/hwloc/include/Makefile config.status: creating opal/mca/hwloc/hwloc132/hwloc/src/Makefile config.status: creating opal/mca/installdirs/config/install_dirs.h config.status: creating opal/mca/backtrace/Makefile config.status: creating opal/mca/backtrace/darwin/Makefile config.status: creating opal/mca/backtrace/execinfo/Makefile config.status: creating opal/mca/backtrace/none/Makefile config.status: creating opal/mca/backtrace/printstack/Makefile config.status: creating opal/mca/carto/Makefile config.status: creating opal/mca/carto/auto_detect/Makefile config.status: creating opal/mca/carto/file/Makefile config.status: creating opal/mca/crs/Makefile config.status: creating opal/mca/crs/blcr/Makefile config.status: creating opal/mca/crs/none/Makefile config.status: creating opal/mca/crs/self/Makefile config.status: creating opal/mca/hwloc/Makefile config.status: creating opal/mca/hwloc/external/Makefile config.status: creating opal/mca/hwloc/hwloc132/Makefile config.status: creating opal/mca/installdirs/Makefile config.status: creating opal/mca/installdirs/config/Makefile config.status: creating opal/mca/installdirs/env/Makefile config.status: creating opal/mca/installdirs/windows/Makefile config.status: creating opal/mca/maffinity/Makefile config.status: creating opal/mca/maffinity/first_use/Makefile config.status: creating opal/mca/maffinity/hwloc/Makefile config.status: creating opal/mca/memchecker/Makefile config.status: creating opal/mca/memchecker/valgrind/Makefile config.status: creating opal/mca/memcpy/Makefile config.status: creating opal/mca/memory/Makefile config.status: creating opal/mca/memory/linux/Makefile config.status: creating opal/mca/memory/malloc_solaris/Makefile config.status: creating opal/mca/paffinity/Makefile config.status: creating opal/mca/paffinity/hwloc/Makefile config.status: creating opal/mca/paffinity/test/Makefile config.status: creating opal/mca/pstat/Makefile config.status: creating opal/mca/pstat/darwin/Makefile config.status: creating opal/mca/pstat/linux/Makefile config.status: creating opal/mca/shmem/Makefile config.status: creating opal/mca/shmem/mmap/Makefile config.status: creating opal/mca/shmem/posix/Makefile config.status: creating opal/mca/shmem/sysv/Makefile config.status: creating opal/mca/shmem/windows/Makefile config.status: creating opal/mca/sysinfo/Makefile config.status: creating opal/mca/sysinfo/darwin/Makefile config.status: creating opal/mca/sysinfo/linux/Makefile config.status: creating opal/mca/sysinfo/solaris/Makefile config.status: creating opal/mca/timer/Makefile config.status: creating opal/mca/timer/aix/Makefile config.status: creating opal/mca/timer/altix/Makefile config.status: creating opal/mca/timer/catamount/Makefile config.status: creating opal/mca/timer/darwin/Makefile config.status: creating opal/mca/timer/linux/Makefile config.status: creating opal/mca/timer/solaris/Makefile config.status: creating opal/mca/timer/windows/Makefile config.status: creating orte/mca/errmgr/Makefile config.status: creating orte/mca/errmgr/default/Makefile config.status: creating orte/mca/ess/Makefile config.status: creating orte/mca/ess/alps/Makefile config.status: creating orte/mca/ess/cnos/Makefile config.status: creating orte/mca/ess/env/Makefile config.status: creating orte/mca/ess/hnp/Makefile config.status: creating orte/mca/ess/lsf/Makefile config.status: creating orte/mca/ess/pmi/Makefile config.status: creating orte/mca/ess/portals_utcp/Makefile config.status: creating orte/mca/ess/singleton/Makefile config.status: creating orte/mca/ess/slave/Makefile config.status: creating orte/mca/ess/slurm/Makefile config.status: creating orte/mca/ess/slurmd/Makefile config.status: creating orte/mca/ess/tm/Makefile config.status: creating orte/mca/ess/tool/Makefile config.status: creating orte/mca/filem/Makefile config.status: creating orte/mca/filem/rsh/Makefile config.status: creating orte/mca/grpcomm/Makefile config.status: creating orte/mca/grpcomm/bad/Makefile config.status: creating orte/mca/grpcomm/basic/Makefile config.status: creating orte/mca/grpcomm/cnos/Makefile config.status: creating orte/mca/grpcomm/hier/Makefile config.status: creating orte/mca/grpcomm/pmi/Makefile config.status: creating orte/mca/iof/Makefile config.status: creating orte/mca/iof/hnp/Makefile config.status: creating orte/mca/iof/orted/Makefile config.status: creating orte/mca/iof/tool/Makefile config.status: creating orte/mca/notifier/Makefile config.status: creating orte/mca/notifier/command/Makefile config.status: creating orte/mca/notifier/ftb/Makefile config.status: creating orte/mca/notifier/smtp/Makefile config.status: creating orte/mca/notifier/syslog/Makefile config.status: creating orte/mca/odls/Makefile config.status: creating orte/mca/odls/default/Makefile config.status: creating orte/mca/odls/process/Makefile config.status: creating orte/mca/oob/Makefile config.status: creating orte/mca/oob/tcp/Makefile config.status: creating orte/mca/plm/Makefile config.status: creating orte/mca/plm/alps/Makefile config.status: creating orte/mca/plm/ccp/Makefile config.status: creating orte/mca/plm/lsf/Makefile config.status: creating orte/mca/plm/process/Makefile config.status: creating orte/mca/plm/rsh/Makefile config.status: creating orte/mca/plm/slurm/Makefile config.status: creating orte/mca/plm/tm/Makefile config.status: creating orte/mca/ras/Makefile config.status: creating orte/mca/ras/alps/Makefile config.status: creating orte/mca/ras/ccp/Makefile config.status: creating orte/mca/ras/cm/Makefile config.status: creating orte/mca/ras/gridengine/Makefile config.status: creating orte/mca/ras/loadleveler/Makefile config.status: creating orte/mca/ras/lsf/Makefile config.status: creating orte/mca/ras/slurm/Makefile config.status: creating orte/mca/ras/tm/Makefile config.status: creating orte/mca/rmaps/Makefile config.status: creating orte/mca/rmaps/load_balance/Makefile config.status: creating orte/mca/rmaps/rank_file/Makefile config.status: creating orte/mca/rmaps/resilient/Makefile config.status: creating orte/mca/rmaps/round_robin/Makefile config.status: creating orte/mca/rmaps/seq/Makefile config.status: creating orte/mca/rmaps/topo/Makefile config.status: creating orte/mca/rmcast/Makefile config.status: creating orte/mca/rmcast/tcp/Makefile config.status: creating orte/mca/rmcast/udp/Makefile config.status: creating orte/mca/rml/Makefile config.status: creating orte/mca/rml/ftrm/Makefile config.status: creating orte/mca/rml/oob/Makefile config.status: creating orte/mca/routed/Makefile config.status: creating orte/mca/routed/binomial/Makefile config.status: creating orte/mca/routed/cm/Makefile config.status: creating orte/mca/routed/direct/Makefile config.status: creating orte/mca/routed/linear/Makefile config.status: creating orte/mca/routed/radix/Makefile config.status: creating orte/mca/routed/slave/Makefile config.status: creating orte/mca/snapc/Makefile config.status: creating orte/mca/snapc/full/Makefile config.status: creating ompi/mca/allocator/Makefile config.status: creating ompi/mca/allocator/basic/Makefile config.status: creating ompi/mca/allocator/bucket/Makefile config.status: creating ompi/mca/bml/Makefile config.status: creating ompi/mca/bml/r2/Makefile config.status: creating ompi/mca/btl/Makefile config.status: creating ompi/mca/btl/elan/Makefile config.status: creating ompi/mca/btl/mx/Makefile config.status: creating ompi/mca/btl/ofud/Makefile config.status: creating ompi/mca/btl/openib/Makefile config.status: creating ompi/mca/btl/portals/Makefile config.status: creating ompi/mca/btl/sctp/Makefile config.status: creating ompi/mca/btl/self/Makefile config.status: creating ompi/mca/btl/sm/Makefile config.status: creating ompi/mca/btl/tcp/Makefile config.status: creating ompi/mca/btl/udapl/Makefile config.status: creating ompi/mca/coll/Makefile config.status: creating ompi/mca/coll/basic/Makefile config.status: creating ompi/mca/coll/fca/Makefile config.status: creating ompi/mca/coll/hierarch/Makefile config.status: creating ompi/mca/coll/inter/Makefile config.status: creating ompi/mca/coll/self/Makefile config.status: creating ompi/mca/coll/sm/Makefile config.status: creating ompi/mca/coll/sync/Makefile config.status: creating ompi/mca/coll/tuned/Makefile config.status: creating ompi/mca/common/Makefile config.status: creating ompi/mca/common/mx/Makefile config.status: creating ompi/mca/common/portals/Makefile config.status: creating ompi/mca/common/sm/Makefile config.status: creating ompi/mca/crcp/Makefile config.status: creating ompi/mca/crcp/bkmrk/Makefile config.status: creating ompi/mca/dpm/Makefile config.status: creating ompi/mca/dpm/orte/Makefile config.status: creating ompi/mca/io/Makefile config.status: creating ompi/mca/io/romio/Makefile config.status: creating ompi/mca/mpool/Makefile config.status: creating ompi/mca/mpool/fake/Makefile config.status: creating ompi/mca/mpool/rdma/Makefile config.status: creating ompi/mca/mpool/sm/Makefile config.status: creating ompi/mca/mtl/Makefile config.status: creating ompi/mca/mtl/mx/Makefile config.status: creating ompi/mca/mtl/mxm/Makefile config.status: creating ompi/mca/mtl/portals/Makefile config.status: creating ompi/mca/mtl/psm/Makefile config.status: creating ompi/mca/op/Makefile config.status: creating ompi/mca/osc/Makefile config.status: creating ompi/mca/osc/pt2pt/Makefile config.status: creating ompi/mca/osc/rdma/Makefile config.status: creating ompi/mca/pml/Makefile config.status: creating ompi/mca/pml/bfo/Makefile config.status: creating ompi/mca/pml/cm/Makefile config.status: creating ompi/mca/pml/crcpw/Makefile config.status: creating ompi/mca/pml/csum/Makefile config.status: creating ompi/mca/pml/ob1/Makefile config.status: creating ompi/mca/pml/v/mca/vprotocol/Makefile config.status: creating ompi/mca/pml/v/mca/vprotocol/pessimist/Makefile config.status: creating ompi/mca/pml/v/Makefile config.status: creating ompi/mca/pubsub/Makefile config.status: creating ompi/mca/pubsub/orte/Makefile config.status: creating ompi/mca/pubsub/pmi/Makefile config.status: creating ompi/mca/rcache/Makefile config.status: creating ompi/mca/rcache/vma/Makefile config.status: creating ompi/mca/topo/Makefile config.status: creating ompi/mca/topo/unity/Makefile config.status: creating ompi/contrib/libompitrace/Makefile config.status: creating ompi/mpiext/Makefile config.status: creating ompi/mpiext/affinity/Makefile config.status: creating ompi/mpiext/example/Makefile config.status: creating ompi/contrib/vt/Makefile config.status: creating ompi/contrib/vt/wrappers/Makefile config.status: creating ompi/contrib/vt/wrappers/mpicc-vt-wrapper-data.txt config.status: creating ompi/contrib/vt/wrappers/mpic++-vt-wrapper-data.txt config.status: creating ompi/contrib/vt/wrappers/mpif77-vt-wrapper-data.txt config.status: creating ompi/contrib/vt/wrappers/mpif90-vt-wrapper-data.txt config.status: creating Makefile config.status: creating config/Makefile config.status: creating contrib/Makefile config.status: creating test/Makefile config.status: creating test/event/Makefile config.status: creating test/asm/Makefile config.status: creating test/datatype/Makefile config.status: creating test/class/Makefile config.status: creating test/support/Makefile config.status: creating test/threads/Makefile config.status: creating test/util/Makefile config.status: creating opal/Makefile config.status: creating opal/etc/Makefile config.status: creating opal/include/Makefile config.status: creating opal/asm/Makefile config.status: creating opal/datatype/Makefile config.status: creating opal/event/Makefile config.status: creating opal/event/compat/Makefile config.status: creating opal/event/compat/sys/Makefile config.status: creating opal/util/Makefile config.status: creating opal/util/keyval/Makefile config.status: creating opal/mca/base/Makefile config.status: creating opal/tools/wrappers/Makefile config.status: creating opal/tools/wrappers/opalcc-wrapper-data.txt config.status: creating opal/tools/wrappers/opalc++-wrapper-data.txt config.status: creating opal/tools/wrappers/opal.pc config.status: creating opal/tools/opal-checkpoint/Makefile config.status: creating opal/tools/opal-restart/Makefile config.status: creating orte/Makefile config.status: creating orte/include/Makefile config.status: creating orte/etc/Makefile config.status: creating orte/tools/orted/Makefile config.status: creating orte/tools/orterun/Makefile config.status: creating orte/tools/wrappers/Makefile config.status: creating orte/tools/wrappers/ortecc-wrapper-data.txt config.status: creating orte/tools/wrappers/ortec++-wrapper-data.txt config.status: creating orte/tools/wrappers/orte.pc config.status: creating orte/tools/orte-checkpoint/Makefile config.status: creating orte/tools/orte-iof/Makefile config.status: creating orte/tools/orte-restart/Makefile config.status: creating orte/tools/orte-ps/Makefile config.status: creating orte/tools/orte-clean/Makefile config.status: creating orte/tools/orte-top/Makefile config.status: creating orte/tools/orte-bootproxy/Makefile config.status: creating ompi/Makefile config.status: creating ompi/etc/Makefile config.status: creating ompi/include/Makefile config.status: creating ompi/include/mpif.h config.status: creating ompi/include/mpif-config.h config.status: creating ompi/datatype/Makefile config.status: creating ompi/debuggers/Makefile config.status: creating ompi/mpi/c/Makefile config.status: creating ompi/mpi/c/profile/Makefile config.status: creating ompi/mpi/cxx/Makefile config.status: creating ompi/mpi/f77/Makefile config.status: creating ompi/mpi/f77/profile/Makefile config.status: creating ompi/mpi/f90/Makefile config.status: creating ompi/mpi/f90/fortran_kinds.sh config.status: creating ompi/mpi/f90/fortran_sizes.h config.status: creating ompi/mpi/f90/scripts/Makefile config.status: creating ompi/tools/ompi_info/Makefile config.status: creating ompi/tools/wrappers/Makefile config.status: creating ompi/tools/wrappers/mpicc-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpic++-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpif77-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpif90-wrapper-data.txt config.status: creating ompi/tools/wrappers/ompi.pc config.status: creating ompi/tools/wrappers/ompi-c.pc config.status: creating ompi/tools/wrappers/ompi-cxx.pc config.status: creating ompi/tools/wrappers/ompi-f77.pc config.status: creating ompi/tools/wrappers/ompi-f90.pc config.status: creating ompi/tools/ortetools/Makefile config.status: creating ompi/tools/ompi-server/Makefile config.status: creating ompi/tools/ompi-probe/Makefile config.status: creating ompi/tools/ompi-profiler/Makefile config.status: creating opal/include/opal_config.h config.status: creating orte/include/orte_config.h config.status: creating ompi/include/ompi_config.h config.status: creating ompi/include/mpi.h config.status: creating ompi/include/mpi_portable_platform.h config.status: creating opal/mca/hwloc/hwloc132/hwloc/include/private/autogen/config.h config.status: creating opal/mca/hwloc/hwloc132/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory => Modifying libtool scripts to use pkgsrc libtool => Modifying libtool scripts to use pkgsrc shlibtool