=> Bootstrap dependency digest>=20010302: found digest-20111104 => Bootstrap dependency fetch-[0-9]*: found fetch-1.7 ===> Installing for gromacs-4.5.5nb1 => Generating pre-install file lists Making install in include Making install in . test -z "/usr/pkg/include/gromacs" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs" /usr/bin/install -c -o pbulk -g pbulk -m 644 3dview.h assert.h atomprop.h bondf.h calcgrid.h calch.h calcmu.h centerofmass.h chargegroup.h checkpoint.h confio.h constr.h copyrite.h coulomb.h dihre.h displacement.h disre.h do_fit.h domdec.h domdec_network.h ebin.h edsam.h enxio.h ffscanf.h filenm.h force.h futil.h gbutil.h gen_ad.h genborn.h gmx_ana.h gmx_arpack.h gmx_blas.h gmx_cyclecounter.h gmx_fatal.h gmx_fft.h gmx_ga2la.h gmx_lapack.h gmx_matrix.h gmx_parallel_3dfft.h '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs' /usr/bin/install -c -o pbulk -g pbulk -m 644 gmx_random.h gmx_sort.h gmx_sse2_single.h gmx_statistics.h gmx_system_xdr.h gmx_wallcycle.h gmxcomplex.h gmxcpp.h gmxfio.h gpp_atomtype.h gpp_nextnb.h grompp.h gstat.h hackblock.h histogram.h index.h indexutil.h inputrec.h invblock.h macros.h magic.h main.h maths.h matio.h md5.h mdatoms.h mdebin.h mdrun.h mpelogging.h mshift.h mtop_util.h mtxio.h mvdata.h names.h nbsearch.h network.h nonbonded.h nrama.h nrjac.h nrnb.h '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs' /usr/bin/install -c -o pbulk -g pbulk -m 644 ns.h nsgrid.h orires.h partdec.h pbc.h pdbio.h pdb2top.h perf_est.h physics.h pme.h poscalc.h position.h pppm.h princ.h pull.h qmmm.h random.h rbin.h rdgroup.h readinp.h resall.h rmpbc.h selection.h selmethod.h selparam.h selvalue.h sfactor.h shellfc.h shift.h smalloc.h sortwater.h sparsematrix.h split.h splitter.h statutil.h strdb.h string2.h symtab.h sysstuff.h tgroup.h '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs' /usr/bin/install -c -o pbulk -g pbulk -m 644 topsort.h toputil.h tpxio.h trajana.h trnio.h txtdump.h typedefs.h update.h vcm.h vec.h viewit.h vmdio.h vsite.h warninp.h wgms.h wman.h writeps.h xdrf.h xtcio.h xvgr.h thread_mpi.h tmpi.h mainpage.h molfile_plugin.h vmddlopen.h vmdplugin.h oenv.h sighandler.h gmx_sse2_double.h '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs' Making install in types test -z "/usr/pkg/include/gromacs/types" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs/types" /usr/bin/install -c -o pbulk -g pbulk -m 644 atoms.h forcerec.h ifunc.h oenv.h mdatom.h simple.h block.h constr.h energy.h graph.h inputrec.h nblist.h ns.h nsgrid.h symtab.h commrec.h enums.h group.h ishift.h globsig.h topology.h fcdata.h filenm.h idef.h matrix.h nrnb.h trx.h state.h pbc.h qmmmrec.h shellfc.h genborn.h iteratedconstraints.h nlistheuristics.h '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs/types' Making install in thread_mpi Making install in atomic test -z "/usr/pkg/include/gromacs/thread_mpi/atomic" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs/thread_mpi/atomic" /usr/bin/install -c -o pbulk -g pbulk -m 644 cycles.h gcc_intrinsics.h gcc_x86.h gcc.h gcc_ppc.h msvc.h gcc_ia64.h gcc_spinlock.h xlc_ppc.h '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs/thread_mpi/atomic' test -z "/usr/pkg/include/gromacs/thread_mpi" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs/thread_mpi" /usr/bin/install -c -o pbulk -g pbulk -m 644 atomic.h event.h lock.h tmpi.h barrier.h mpi_bindings.h wait.h collective.h list.h threads.h numa_malloc.h '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/include/gromacs/thread_mpi' Making install in src Making install in gmxlib Making install in nonbonded Making install in nb_kernel_x86_64_sse2 Making install in nb_kernel_c Making install in selection Making install in statistics Making install in trajana Making install in gmx_blas Making install in gmx_lapack test -z "/usr/pkg/lib" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c -o pbulk -g pbulk libgmx_mpi_d.la '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libgmx_mpi_d.so.6.0.0 /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmx_mpi_d.so.6.0.0 libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib && { ln -s -f libgmx_mpi_d.so.6.0.0 libgmx_mpi_d.so.6 || { rm -f libgmx_mpi_d.so.6 && ln -s libgmx_mpi_d.so.6.0.0 libgmx_mpi_d.so.6; }; }) libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib && { ln -s -f libgmx_mpi_d.so.6.0.0 libgmx_mpi_d.so || { rm -f libgmx_mpi_d.so && ln -s libgmx_mpi_d.so.6.0.0 libgmx_mpi_d.so; }; }) libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libgmx_mpi_d.lai /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmx_mpi_d.la libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libgmx_mpi_d.a /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmx_mpi_d.a libtool: install: chmod 644 /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmx_mpi_d.a libtool: install: ranlib /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmx_mpi_d.a libtool: install: warning: remember to run `libtool --finish /usr/pkg/lib' test -z "/usr/pkg/lib/pkgconfig" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/pkgconfig" /usr/bin/install -c -o pbulk -g pbulk -m 644 libgmx_mpi_d.pc '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/pkgconfig' Making install in mdlib test -z "/usr/pkg/lib" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c -o pbulk -g pbulk libmd_mpi_d.la '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib' libtool: install: warning: relinking `libmd_mpi_d.la' libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib; /bin/sh /usr/pkg/bin/libtool --tag CC --mode=relink mpicc -O3 -pipe -fstack-protector -no-undefined -version-info 6:0:0 -lfftw3 -L/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -Wl,-R/usr/pkg/lib -o libmd_mpi_d.la -rpath /usr/pkg/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_box.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo force.lo forcerec.lo ghat.lo init.lo iteratedconstraints.lo md_support.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nlistheuristics.lo nsgrid.lo perf_est.lo genborn.lo genborn_sse2_single.lo genborn_sse2_double.lo genborn_allvsall.lo genborn_allvsall_sse2_single.lo genborn_allvsall_sse2_double.lo gmx_qhop_parm.lo gmx_qhop_xml.lo groupcoord.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo tpi.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo fft5d.lo gmx_wallcycle.lo qm_gaussian.lo qm_mopac.lo qm_gamess.lo gmx_fft_fftw2.lo gmx_fft_fftw3.lo gmx_fft_fftpack.lo gmx_fft_mkl.lo qm_orca.lo mdebin_bar.lo -L../gmxlib/.libs ../gmxlib/libgmx_mpi_d.la -lnsl -lm -inst-prefix-dir /tmp/pkgsrc/biology/gromacs/work/.destdir) libtool: relink: gcc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_box.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/force.o .libs/forcerec.o .libs/ghat.o .libs/init.o .libs/iteratedconstraints.o .libs/md_support.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nlistheuristics.o .libs/nsgrid.o .libs/perf_est.o .libs/genborn.o .libs/genborn_sse2_single.o .libs/genborn_sse2_double.o .libs/genborn_allvsall.o .libs/genborn_allvsall_sse2_single.o .libs/genborn_allvsall_sse2_double.o .libs/gmx_qhop_parm.o .libs/gmx_qhop_xml.o .libs/groupcoord.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/tpi.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/fft5d.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/qm_mopac.o .libs/qm_gamess.o .libs/gmx_fft_fftw2.o .libs/gmx_fft_fftw3.o .libs/gmx_fft_fftpack.o .libs/gmx_fft_mkl.o .libs/qm_orca.o .libs/mdebin_bar.o -Wl,-rpath -Wl,/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -Wl,-rpath -Wl,/usr/pkg/lib -L/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/.libs -L/tmp/pkgsrc/biology/gromacs/work/.destdir/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -L/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -lfftw3 -L/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib -L/usr/pkg/lib -lgmx_mpi_d -ldl -lnsl -lm -Wl,-R/usr/pkg/lib -Wl,-soname -Wl,libmd_mpi_d.so.6 -o .libs/libmd_mpi_d.so.6.0.0 libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libmd_mpi_d.so.6.0.0T /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libmd_mpi_d.so.6.0.0 libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib && { ln -s -f libmd_mpi_d.so.6.0.0 libmd_mpi_d.so.6 || { rm -f libmd_mpi_d.so.6 && ln -s libmd_mpi_d.so.6.0.0 libmd_mpi_d.so.6; }; }) libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib && { ln -s -f libmd_mpi_d.so.6.0.0 libmd_mpi_d.so || { rm -f libmd_mpi_d.so && ln -s libmd_mpi_d.so.6.0.0 libmd_mpi_d.so; }; }) libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libmd_mpi_d.lai /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libmd_mpi_d.la libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libmd_mpi_d.a /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libmd_mpi_d.a libtool: install: chmod 644 /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libmd_mpi_d.a libtool: install: ranlib /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libmd_mpi_d.a libtool: install: warning: remember to run `libtool --finish /usr/pkg/lib' test -z "/usr/pkg/lib/pkgconfig" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/pkgconfig" /usr/bin/install -c -o pbulk -g pbulk -m 644 libmd_mpi_d.pc '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/pkgconfig' Making install in kernel test -z "/usr/pkg/lib" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c -o pbulk -g pbulk libgmxpreprocess_mpi_d.la '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib' libtool: install: warning: relinking `libgmxpreprocess_mpi_d.la' libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/kernel; /bin/sh /usr/pkg/bin/libtool --tag CC --mode=relink mpicc -O3 -pipe -fstack-protector -no-undefined -version-info 6:0:0 -L/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -Wl,-R/usr/pkg/lib -o libgmxpreprocess_mpi_d.la -rpath /usr/pkg/lib add_par.lo compute_io.lo convparm.lo fflibutil.lo gen_ad.lo gen_vsite.lo genhydro.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo -L../mdlib/.libs ../mdlib/libmd_mpi_d.la -lnsl -lm -inst-prefix-dir /tmp/pkgsrc/biology/gromacs/work/.destdir) libtool: relink: gcc -shared .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/fflibutil.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o -Wl,-rpath -Wl,/usr/pkg/lib -Wl,-rpath -Wl,/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -L/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/.libs -L/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/.libs -L/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -L/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib -L/usr/pkg/lib -lmd_mpi_d -L/tmp/pkgsrc/biology/gromacs/work/.destdir/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -lfftw3 -lgmx_mpi_d -ldl -lnsl -lm -Wl,-R/usr/pkg/lib -Wl,-soname -Wl,libgmxpreprocess_mpi_d.so.6 -o .libs/libgmxpreprocess_mpi_d.so.6.0.0 libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libgmxpreprocess_mpi_d.so.6.0.0T /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmxpreprocess_mpi_d.so.6.0.0 libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib && { ln -s -f libgmxpreprocess_mpi_d.so.6.0.0 libgmxpreprocess_mpi_d.so.6 || { rm -f libgmxpreprocess_mpi_d.so.6 && ln -s libgmxpreprocess_mpi_d.so.6.0.0 libgmxpreprocess_mpi_d.so.6; }; }) libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib && { ln -s -f libgmxpreprocess_mpi_d.so.6.0.0 libgmxpreprocess_mpi_d.so || { rm -f libgmxpreprocess_mpi_d.so && ln -s libgmxpreprocess_mpi_d.so.6.0.0 libgmxpreprocess_mpi_d.so; }; }) libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libgmxpreprocess_mpi_d.lai /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmxpreprocess_mpi_d.la libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libgmxpreprocess_mpi_d.a /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmxpreprocess_mpi_d.a libtool: install: chmod 644 /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmxpreprocess_mpi_d.a libtool: install: ranlib /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmxpreprocess_mpi_d.a libtool: install: warning: remember to run `libtool --finish /usr/pkg/lib' test -z "/usr/pkg/bin" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin" /bin/sh ../../libtool --mode=install /usr/bin/install -c -s -o pbulk -g pbulk -m 755 grompp mdrun tpbconv pdb2gmx g_protonate g_luck gmxdump gmxcheck g_x2top '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin' libtool: install: warning: `libgmxpreprocess_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/grompp /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/grompp libtool: install: warning: `libgmxpreprocess_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/mdrun /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/mdrun libtool: install: warning: `libgmxpreprocess_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/tpbconv /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/tpbconv libtool: install: warning: `libgmxpreprocess_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/pdb2gmx /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/pdb2gmx libtool: install: warning: `libgmxpreprocess_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_protonate /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_protonate libtool: install: warning: `libgmxpreprocess_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_luck /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_luck libtool: install: warning: `libgmxpreprocess_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/gmxdump /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/gmxdump libtool: install: warning: `libgmxpreprocess_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/gmxcheck /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/gmxcheck libtool: install: warning: `libgmxpreprocess_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_x2top /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_x2top test -z "/usr/pkg/lib/pkgconfig" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/pkgconfig" /usr/bin/install -c -o pbulk -g pbulk -m 644 libgmxpreprocess_mpi_d.pc '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/pkgconfig' Making install in tools test -z "/usr/pkg/lib" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c -o pbulk -g pbulk libgmxana_mpi_d.la '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib' libtool: install: warning: relinking `libgmxana_mpi_d.la' libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/tools; /bin/sh /usr/pkg/bin/libtool --tag CC --mode=relink mpicc -O3 -pipe -fstack-protector -no-undefined -version-info 6:0:0 -lgsl -lgslcblas -L/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -Wl,-R/usr/pkg/lib -o libgmxana_mpi_d.la -rpath /usr/pkg/lib geminate.lo autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_bar.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_dos.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_rotmat.lo gmx_saltbr.lo gmx_sas.lo gmx_select.lo gmx_pme_error.lo gmx_options.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo gmx_tune_pme.lo gmx_membed.lo calcpot.lo edittop.lo dens_filter.lo powerspect.lo gmx_densorder.lo gmx_hydorder.lo binsearch.lo -L../gmxlib/.libs ../gmxlib/libgmx_mpi_d.la -L../mdlib/.libs ../mdlib/libmd_mpi_d.la -lnsl -lm -inst-prefix-dir /tmp/pkgsrc/biology/gromacs/work/.destdir) libtool: relink: gcc -shared .libs/geminate.o .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_bar.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_dos.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_rotmat.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_select.o .libs/gmx_pme_error.o .libs/gmx_options.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/gmx_tune_pme.o .libs/gmx_membed.o .libs/calcpot.o .libs/edittop.o .libs/dens_filter.o .libs/powerspect.o .libs/gmx_densorder.o .libs/gmx_hydorder.o .libs/binsearch.o -Wl,-rpath -Wl,/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -Wl,-rpath -Wl,/usr/pkg/lib -L/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/.libs -L/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/.libs -L/tmp/pkgsrc/biology/gromacs/work/.destdir/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -L/tmp/pkgsrc/biology/gromacs/work/.buildlink/lib -lgsl -lgslcblas -L/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib -L/usr/pkg/lib -lmd_mpi_d -lfftw3 -lgmx_mpi_d -ldl -lnsl -lm -Wl,-R/usr/pkg/lib -Wl,-soname -Wl,libgmxana_mpi_d.so.6 -o .libs/libgmxana_mpi_d.so.6.0.0 libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libgmxana_mpi_d.so.6.0.0T /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmxana_mpi_d.so.6.0.0 libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib && { ln -s -f libgmxana_mpi_d.so.6.0.0 libgmxana_mpi_d.so.6 || { rm -f libgmxana_mpi_d.so.6 && ln -s libgmxana_mpi_d.so.6.0.0 libgmxana_mpi_d.so.6; }; }) libtool: install: (cd /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib && { ln -s -f libgmxana_mpi_d.so.6.0.0 libgmxana_mpi_d.so || { rm -f libgmxana_mpi_d.so && ln -s libgmxana_mpi_d.so.6.0.0 libgmxana_mpi_d.so; }; }) libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libgmxana_mpi_d.lai /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmxana_mpi_d.la libtool: install: /usr/bin/install -c -o pbulk -g pbulk .libs/libgmxana_mpi_d.a /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmxana_mpi_d.a libtool: install: chmod 644 /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmxana_mpi_d.a libtool: install: ranlib /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/libgmxana_mpi_d.a libtool: install: warning: remember to run `libtool --finish /usr/pkg/lib' test -z "/usr/pkg/bin" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin" /bin/sh ../../libtool --mode=install /usr/bin/install -c -s -o pbulk -g pbulk -m 755 do_dssp editconf eneconv genbox genconf genrestr g_nmtraj make_ndx mk_angndx trjcat trjconv trjorder g_wheel xpm2ps genion g_anadock make_edi g_analyze g_anaeig g_bar g_angle g_bond g_bundle g_chi g_cluster g_confrms g_covar g_current g_dos g_density g_densmap g_dih g_dielectric g_helixorient g_principal g_dipoles g_disre g_dist g_dyndom g_enemat g_energy g_lie g_filter g_gyrate g_h2order g_hbond g_helix g_mindist g_msd g_morph g_nmeig g_nmens g_order g_kinetics g_polystat g_potential g_rama g_rdf g_rms g_rmsdist g_rmsf g_rotacf g_rotmat g_saltbr g_sas g_select g_sgangle g_sham g_sorient g_spol g_spatial g_pme_error g_options g_tcaf g_traj g_tune_pme g_vanhove g_velacc g_membed g_clustsize g_mdmat g_wham g_kinetics g_sigeps g_densorder g_hydorder '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/do_dssp /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/do_dssp libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/editconf /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/editconf libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/eneconv /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/eneconv libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/genbox /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/genbox libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/genconf /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/genconf libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/genrestr /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/genrestr libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_nmtraj /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_nmtraj libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/make_ndx /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/make_ndx libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/mk_angndx /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/mk_angndx libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/trjcat /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/trjcat libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/trjconv /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/trjconv libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/trjorder /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/trjorder libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_wheel /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_wheel libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/xpm2ps /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/xpm2ps libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/genion /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/genion libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_anadock /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_anadock libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/make_edi /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/make_edi libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_analyze /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_analyze libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_anaeig /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_anaeig libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_bar /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_bar libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_angle /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_angle libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_bond /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_bond libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_bundle /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_bundle libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_chi /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_chi libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_cluster /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_cluster libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_confrms /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_confrms libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_covar /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_covar libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_current /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_current libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_dos /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_dos libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_density /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_density libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_densmap /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_densmap libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_dih /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_dih libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_dielectric /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_dielectric libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_helixorient /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_helixorient libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_principal /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_principal libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_dipoles /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_dipoles libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_disre /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_disre libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_dist /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_dist libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_dyndom /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_dyndom libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_enemat /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_enemat libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_energy /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_energy libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_lie /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_lie libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_filter /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_filter libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_gyrate /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_gyrate libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_h2order /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_h2order libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_hbond /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_hbond libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_helix /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_helix libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_mindist /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_mindist libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_msd /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_msd libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_morph /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_morph libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_nmeig /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_nmeig libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_nmens /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_nmens libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_order /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_order libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_kinetics /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_kinetics libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_polystat /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_polystat libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_potential /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_potential libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_rama /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_rama libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_rdf /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_rdf libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_rms /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_rms libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_rmsdist /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_rmsdist libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_rmsf /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_rmsf libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_rotacf /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_rotacf libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_rotmat /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_rotmat libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_saltbr /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_saltbr libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_sas /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_sas libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_select /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_select libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_sgangle /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_sgangle libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_sham /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_sham libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_sorient /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_sorient libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_spol /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_spol libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_spatial /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_spatial libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_pme_error /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_pme_error libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_options /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_options libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_tcaf /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_tcaf libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_traj /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_traj libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_tune_pme /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_tune_pme libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_vanhove /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_vanhove libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_velacc /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_velacc libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_membed /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_membed libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_clustsize /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_clustsize libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_mdmat /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_mdmat libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_wham /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_wham libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_kinetics /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_kinetics libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_sigeps /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_sigeps libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_densorder /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_densorder libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_hydorder /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_hydorder test -z "/usr/pkg/lib/pkgconfig" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/pkgconfig" /usr/bin/install -c -o pbulk -g pbulk -m 644 libgmxana_mpi_d.pc '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/lib/pkgconfig' Making install in ngmx test -z "/usr/pkg/bin" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin" /bin/sh ../../libtool --mode=install /usr/bin/install -c -s -o pbulk -g pbulk -m 755 ngmx g_xrama '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/ngmx /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/ngmx libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `/tmp/pkgsrc/biology/gromacs/work/gromacs-4.5.5/src/gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/pkg/lib' libtool: install: /usr/bin/install -c -o pbulk -g pbulk -m 755 -s .libs/g_xrama /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin/g_xrama Making install in contrib Making install in admin Making install in scripts test -z "/usr/pkg/bin" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin" /usr/bin/install -c -o pbulk -g pbulk -m 755 GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin' test -z "/usr/pkg/bin" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin" /usr/bin/install -c -o pbulk -g pbulk -m 755 completion.csh completion.bash completion.zsh demux.pl xplor2gmx.pl '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/bin' Making install in share Making install in top Making install in encads.ff test -z "/usr/pkg/share/gromacs/top/encads.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/encads.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.c.tdb atomtypes.atp f3c.itp aminoacids.hdb ffbonded.itp aminoacids.n.tdb ffnonbonded.itp aminoacids.rtp forcefield.doc aminoacids.r2b forcefield.itp watermodels.dat '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/encads.ff' Making install in encadv.ff test -z "/usr/pkg/share/gromacs/top/encadv.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/encadv.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.c.tdb atomtypes.atp aminoacids.hdb ffbonded.itp aminoacids.n.tdb ffnonbonded.itp aminoacids.rtp forcefield.doc aminoacids.r2b forcefield.itp watermodels.dat '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/encadv.ff' Making install in gmx.ff test -z "/usr/pkg/share/gromacs/top/gmx.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gmx.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.c.tdb atomtypes.atp ions.itp aminoacids.hdb ffbonded.itp spc.itp aminoacids.n.tdb ffnonbonded.itp spce.itp aminoacids.rtp forcefield.doc tip3p.itp aminoacids.vsd forcefield.itp tip4p.itp h2p4o13.itp h2p8o25.itp h2po4.itp 1mlg.itp 2mlg.itp decane.itp dlg.itp fa.itp tfe.itp decane50.gro watermodels.dat ff_dum.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gmx.ff' Making install in gmx2.ff test -z "/usr/pkg/share/gromacs/top/gmx2.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gmx2.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.c.tdb atomtypes.atp ions.itp aminoacids.hdb ffbonded.itp spc.itp aminoacids.n.tdb ffnonbonded.itp spce.itp aminoacids.rtp forcefield.doc tip3p.itp aminoacids.vsd forcefield.itp tip4p.itp watermodels.dat ff_dum.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gmx2.ff' Making install in gromos43a1.ff test -z "/usr/pkg/share/gromacs/top/gromos43a1.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gromos43a1.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.c.tdb atomtypes.atp ions.itp aminoacids.hdb ffbonded.itp spc.itp aminoacids.n.tdb ffnonbonded.itp spce.itp aminoacids.rtp forcefield.doc tip3p.itp aminoacids.vsd forcefield.itp tip4p.itp aminoacids.r2b methanol.itp methanol216.gro watermodels.dat ff_dum.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gromos43a1.ff' Making install in gromos43a2.ff test -z "/usr/pkg/share/gromacs/top/gromos43a2.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gromos43a2.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.c.tdb atomtypes.atp ions.itp aminoacids.hdb ffbonded.itp spc.itp aminoacids.n.tdb ffnonbonded.itp spce.itp aminoacids.rtp forcefield.doc tip3p.itp aminoacids.vsd forcefield.itp tip4p.itp aminoacids.r2b watermodels.dat ff_dum.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gromos43a2.ff' Making install in gromos45a3.ff test -z "/usr/pkg/share/gromacs/top/gromos45a3.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gromos45a3.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.c.tdb atomtypes.atp ions.itp aminoacids.hdb ffbonded.itp spc.itp aminoacids.n.tdb ffnonbonded.itp spce.itp aminoacids.rtp forcefield.doc tip3p.itp aminoacids.vsd forcefield.itp tip4p.itp aminoacids.r2b watermodels.dat ff_dum.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gromos45a3.ff' Making install in gromos53a5.ff test -z "/usr/pkg/share/gromacs/top/gromos53a5.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gromos53a5.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.c.tdb atomtypes.atp ions.itp aminoacids.hdb ffbonded.itp spc.itp aminoacids.n.tdb ffnonbonded.itp spce.itp aminoacids.rtp forcefield.doc tip3p.itp aminoacids.vsd forcefield.itp tip4p.itp aminoacids.r2b atomname2type.n2t watermodels.dat ff_dum.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gromos53a5.ff' Making install in gromos53a6.ff test -z "/usr/pkg/share/gromacs/top/gromos53a6.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gromos53a6.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.c.tdb atomtypes.atp ions.itp aminoacids.hdb ffbonded.itp spc.itp aminoacids.n.tdb ffnonbonded.itp spce.itp aminoacids.rtp forcefield.doc tip3p.itp aminoacids.vsd forcefield.itp tip4p.itp aminoacids.r2b watermodels.dat ff_dum.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/gromos53a6.ff' Making install in oplsaa.ff test -z "/usr/pkg/share/gromacs/top/oplsaa.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/oplsaa.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.c.tdb atomtypes.atp ions.itp aminoacids.hdb ffbonded.itp spc.itp aminoacids.n.tdb ffnonbonded.itp spce.itp aminoacids.rtp forcefield.doc tip3p.itp aminoacids.vsd forcefield.itp tip4p.itp aminoacids.r2b tip5p.itp methanol.itp ethanol.itp 1propanol.itp atomname2type.n2t watermodels.dat gbsa.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/oplsaa.ff' Making install in charmm27.ff test -z "/usr/pkg/share/gromacs/top/charmm27.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/charmm27.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.arn aminoacids.vsd ffnanonbonded.itp lipids.hdb aminoacids.c.tdb atomtypes.atp ffnonbonded.itp lipids.rtp aminoacids.hdb cmap.itp forcefield.doc rna.rtp aminoacids.n.tdb dna.rtp forcefield.itp spc.itp aminoacids.r2b ffbonded.itp gb.itp tip3p.itp aminoacids.rtp ffnabonded.itp ions.itp tip4p.itp spce.itp tips3p.itp watermodels.dat tip5p.itp dna.hdb dna.n.tdb dna.c.tdb dna.arn rna.hdb rna.n.tdb rna.c.tdb rna.arn rna.r2b '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/charmm27.ff' Making install in amber94.ff test -z "/usr/pkg/share/gromacs/top/amber94.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber94.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.arn aminoacids.vsd aminoacids.c.tdb atomtypes.atp ffnonbonded.itp aminoacids.hdb forcefield.doc dna.rtp dna.r2b dna.arn dna.hdb aminoacids.n.tdb forcefield.itp rna.rtp rna.r2b rna.arn rna.hdb aminoacids.r2b ffbonded.itp tip3p.itp urea.itp aminoacids.rtp ions.itp tip4p.itp tip4pew.itp tip5p.itp watermodels.dat gbsa.itp spc.itp spce.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber94.ff' Making install in amber96.ff test -z "/usr/pkg/share/gromacs/top/amber96.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber96.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.arn aminoacids.vsd aminoacids.c.tdb atomtypes.atp ffnonbonded.itp aminoacids.hdb forcefield.doc dna.rtp dna.r2b dna.arn dna.hdb aminoacids.n.tdb forcefield.itp rna.rtp rna.r2b rna.arn rna.hdb aminoacids.r2b ffbonded.itp tip3p.itp urea.itp aminoacids.rtp ions.itp tip4p.itp tip4pew.itp tip5p.itp watermodels.dat gbsa.itp spc.itp spce.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber96.ff' Making install in amberGS.ff test -z "/usr/pkg/share/gromacs/top/amberGS.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amberGS.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.arn aminoacids.vsd aminoacids.c.tdb atomtypes.atp ffnonbonded.itp aminoacids.hdb forcefield.doc dna.rtp dna.r2b dna.arn dna.hdb aminoacids.n.tdb forcefield.itp rna.rtp rna.r2b rna.arn rna.hdb aminoacids.r2b ffbonded.itp tip3p.itp urea.itp aminoacids.rtp ions.itp tip4p.itp tip4pew.itp tip5p.itp watermodels.dat gbsa.itp spc.itp spce.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amberGS.ff' Making install in amber99.ff test -z "/usr/pkg/share/gromacs/top/amber99.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber99.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.arn aminoacids.vsd aminoacids.c.tdb atomtypes.atp ffnonbonded.itp aminoacids.hdb forcefield.doc dna.rtp dna.r2b dna.arn dna.hdb aminoacids.n.tdb forcefield.itp rna.rtp rna.r2b rna.arn rna.hdb aminoacids.r2b ffbonded.itp tip3p.itp urea.itp aminoacids.rtp ions.itp tip4p.itp tip4pew.itp tip5p.itp watermodels.dat gbsa.itp spc.itp spce.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber99.ff' Making install in amber99sb.ff test -z "/usr/pkg/share/gromacs/top/amber99sb.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber99sb.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.arn aminoacids.vsd aminoacids.c.tdb atomtypes.atp ffnonbonded.itp aminoacids.hdb forcefield.doc dna.rtp dna.r2b dna.arn dna.hdb aminoacids.n.tdb forcefield.itp rna.rtp rna.r2b rna.arn rna.hdb aminoacids.r2b ffbonded.itp tip3p.itp urea.itp aminoacids.rtp ions.itp tip4p.itp tip4pew.itp tip5p.itp watermodels.dat gbsa.itp spc.itp spce.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber99sb.ff' Making install in amber99sb-ildn.ff test -z "/usr/pkg/share/gromacs/top/amber99sb-ildn.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber99sb-ildn.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.arn aminoacids.vsd aminoacids.c.tdb atomtypes.atp ffnonbonded.itp aminoacids.hdb forcefield.doc dna.rtp dna.r2b dna.arn dna.hdb aminoacids.n.tdb forcefield.itp rna.rtp rna.r2b rna.arn rna.hdb aminoacids.r2b ffbonded.itp tip3p.itp urea.itp aminoacids.rtp ions.itp tip4p.itp tip4pew.itp tip5p.itp watermodels.dat gbsa.itp spc.itp spce.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber99sb-ildn.ff' Making install in amber03.ff test -z "/usr/pkg/share/gromacs/top/amber03.ff" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber03.ff" /usr/bin/install -c -o pbulk -g pbulk -m 644 aminoacids.arn aminoacids.vsd aminoacids.c.tdb atomtypes.atp ffnonbonded.itp aminoacids.hdb forcefield.doc dna.rtp dna.r2b dna.arn dna.hdb aminoacids.n.tdb forcefield.itp rna.rtp rna.r2b rna.arn rna.hdb aminoacids.r2b ffbonded.itp tip3p.itp urea.itp aminoacids.rtp ions.itp tip4p.itp tip4pew.itp tip5p.itp watermodels.dat gbsa.itp spc.itp spce.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top/amber03.ff' test -z "/usr/pkg/share/gromacs/top" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top" /usr/bin/install -c -o pbulk -g pbulk -m 644 flexspc.itp flexspce.itp flexwat-ferguson.itp ions.itp spc.itp spce.itp tip3p.itp tip4p.itp dgsolv.dat electroneg.dat spc216.gro tip4p.gro residuetypes.dat atommass.dat bromacs.dat ca-shift.dat cb-shift.dat co-shift.dat edissoc.dat gurgle.dat ha-shift.dat links.dat phbres.dat random.dat refi_aa.dat specbond.dat surface.dat vdwradii.dat xlateat.dat highway.dat sfactor.dat export.dlg bonds.dlg ss.map ps.m2p table6-10.xvg table6-11.xvg table6-12.xvg table6-8.xvg table6-9.xvg '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top' /usr/bin/install -c -o pbulk -g pbulk -m 644 atom_nom.tbl tip5p.gro sw.itp elements.dat defselection.dat ffG43a1.itp ffG53a5.itp ffencads.itp ffgmx2.itp ffG43a2.itp ffG53a6.itp ffencadv.itp ffoplsaa-n.tst ffG45a3.itp ffgmx.itp ffoplsaa.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/top' Making install in tutor Making install in nmr1 test -z "/usr/pkg/share/gromacs/tutor/nmr1" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/nmr1" /usr/bin/install -c -o pbulk -g pbulk -m 644 conf.gro grompp.mdp pep.pdb topol.top '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/nmr1' Making install in nmr2 test -z "/usr/pkg/share/gromacs/tutor/nmr2" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/nmr2" /usr/bin/install -c -o pbulk -g pbulk -m 644 conf.gro genconf.gcp grompp.mdp pep.pdb topol.top '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/nmr2' Making install in speptide test -z "/usr/pkg/share/gromacs/tutor/speptide" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/speptide" /usr/bin/install -c -o pbulk -g pbulk -m 644 em.mdp full.mdp pr.mdp speptide.pdb '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/speptide' Making install in water test -z "/usr/pkg/share/gromacs/tutor/water" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/water" /usr/bin/install -c -o pbulk -g pbulk -m 644 index.ndx conf.gro spc216.pdb grompp.mdp topol.top '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/water' Making install in gmxdemo test -z "/usr/pkg/share/gromacs/tutor/gmxdemo" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/gmxdemo" /usr/bin/install -c -o pbulk -g pbulk -m 644 cpeptide.pdb '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/gmxdemo' test -z "/usr/pkg/share/gromacs/tutor/gmxdemo" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/gmxdemo" /usr/bin/install -c -o pbulk -g pbulk -m 755 demo '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/gmxdemo' Making install in methanol test -z "/usr/pkg/share/gromacs/tutor/methanol" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/methanol" /usr/bin/install -c -o pbulk -g pbulk -m 644 index.ndx conf.gro methanol.pdb grompp.mdp topol.top methanol.itp '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/methanol' Making install in mixed test -z "/usr/pkg/share/gromacs/tutor/mixed" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/mixed" /usr/bin/install -c -o pbulk -g pbulk -m 644 index.ndx conf.gro mixed.pdb grompp.mdp topol.top '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/tutor/mixed' Making install in template /usr/pkg/bin/bmake install-am test -z "/usr/pkg/share/gromacs/template" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/template" /usr/bin/install -c -o pbulk -g pbulk -m 644 template.c README Makefile.x86_64-unknown-linux-gnu_double Makefile.pkg '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/template' Making install in html Making install in . test -z "/usr/pkg/share/gromacs/html" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/html" /usr/bin/install -c -o pbulk -g pbulk -m 644 online.html gmxfaq.html '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/html' Making install in images test -z "/usr/pkg/share/gromacs/html/images" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/html/images" /usr/bin/install -c -o pbulk -g pbulk -m 644 features.gif flow_leftrightup.gif flow_vrule.gif flow_down.gif flow_leftup.gif links.gif articles.gif flow_downleft.gif flow_right+left.gif mail.gif bench.gif flow_hline.gif flow_right.gif manual.gif charts_down.gif flow_left.gif flow_rightleftdown.gif gmxlogo_small.jpg charts_up.gif flow_leftright.gif flow_uprightleft.gif software.gif faq.gif flow_leftrightdown.gif flow_vline.gif topologies.gif plotje.gif xvgr.gif 1ctf-0.jpg 1ctf-0.2.jpg 1ctf-0.5.jpg 1ctf-1.jpg 1ctf-4.jpg 1ctf-10.jpg '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/html/images' Making install in online test -z "/usr/pkg/share/gromacs/html/online" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/html/online" /usr/bin/install -c -o pbulk -g pbulk -m 644 cpt.html dat.html g_disre.html g_sorient.html ndx.html dlg.html g_dist.html g_tcaf.html ngmx.html do_dssp.html g_dyndom.html g_traj.html edi.html g_enemat.html g_velacc.html options.html editconf.html g_energy.html genbox.html out.html edo.html g_gyrate.html genconf.html pdb.html edr.html g_h2order.html genion.html pdb2gmx.html ene.html g_hbond.html genpr.html protonate.html eneconv.html g_helix.html getting_started.html rtp.html eps.html g_lie.html gmxcheck.html tex.html '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/html/online' /usr/bin/install -c -o pbulk -g pbulk -m 644 files.html g_mdmat.html gmxdump.html top.html flow.html g_mindist.html gro.html tpa.html g87.html g_morph.html grompp.html tpb.html g96.html g_msd.html hat.html tpbconv.html g_anaeig.html g_nmeig.html highway.html tpr.html g_analyze.html g_nmens.html include_bot.html trj.html g_angle.html g_order.html include_top.html trjcat.html g_bond.html g_potential.html itp.html trjconv.html g_bundle.html g_rama.html log.html trjorder.html g_chi.html g_rdf.html m2p.html trr.html '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/html/online' /usr/bin/install -c -o pbulk -g pbulk -m 644 g_cluster.html g_rms.html make_ndx.html wheel.html g_confrms.html g_rmsdist.html map.html x2top.html g_covar.html g_rmsf.html mdp.html xpm.html g_density.html g_rotacf.html mdp_opt.html xpm2ps.html g_dielectric.html g_saltbr.html mdrun.html xrama.html g_dih.html g_sas.html mk_angndx.html xtc.html g_dipoles.html g_sgangle.html mtx.html xvg.html g_densmap.html g_sham.html make_edi.html g_densorder.html style.css water.html gmxdemo.html speptide.html yourown.html methanol.html mixed.html protunf.html '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/html/online' Making install in man Making install in man1 test -z "/usr/pkg/share/man/man1" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/man/man1" /usr/bin/install -c -o pbulk -g pbulk -m 644 do_dssp.1 editconf.1 eneconv.1 g_anadock.1 g_anaeig.1 g_analyze.1 g_angle.1 g_bar.1 g_bond.1 g_bundle.1 g_chi.1 g_cluster.1 g_clustsize.1 g_confrms.1 g_covar.1 g_current.1 g_density.1 g_densmap.1 g_densorder.1 g_dielectric.1 g_dih.1 g_dipoles.1 g_disre.1 g_dist.1 g_dyndom.1 g_enemat.1 g_energy.1 g_filter.1 g_gyrate.1 g_h2order.1 g_hbond.1 g_helix.1 g_helixorient.1 g_hydorder.1 g_lie.1 g_mdmat.1 g_membed.1 g_mindist.1 g_morph.1 g_msd.1 '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/man/man1' /usr/bin/install -c -o pbulk -g pbulk -m 644 g_nmeig.1 g_nmens.1 g_nmtraj.1 g_options.1 g_order.1 g_pme_error.1 g_polystat.1 g_potential.1 g_principal.1 g_protonate.1 g_rama.1 g_rdf.1 g_rms.1 g_rmsdist.1 g_rmsf.1 g_rotacf.1 g_rotmat.1 g_saltbr.1 g_sas.1 g_select.1 g_sgangle.1 g_sham.1 g_sigeps.1 g_sorient.1 g_spatial.1 g_spol.1 g_tcaf.1 g_traj.1 g_tune_pme.1 g_vanhove.1 g_velacc.1 g_wham.1 g_wheel.1 g_x2top.1 g_xrama.1 genbox.1 genconf.1 genion.1 genrestr.1 gmxcheck.1 '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/man/man1' /usr/bin/install -c -o pbulk -g pbulk -m 644 gmxdump.1 grompp.1 make_edi.1 make_ndx.1 mdrun.1 mk_angndx.1 ngmx.1 pdb2gmx.1 tpbconv.1 trjcat.1 trjconv.1 trjorder.1 xpm2ps.1 '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/man/man1' Making install in man7 test -z "/usr/pkg/share/man/man7" || /tmp/pkgsrc/biology/gromacs/work/.tools/bin/mkdir -p "/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/man/man7" /usr/bin/install -c -o pbulk -g pbulk -m 644 gromacs.7 '/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/man/man7' /usr/pkg/bin/bmake install-exec-hook GROMACS is installed under /usr/pkg. Make sure to update your PATH and MANPATH to find the programs and unix manual pages, and possibly LD_LIBRARY_PATH or /etc/ld.so.conf if you are using dynamic libraries. Please run "make tests" now to verify your installation. If you want links to the executables in /usr/local/bin, you can issue "make links" now. => Automatic manual page handling => Generating post-install file lists pkg_create: can't stat `/tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/template/Makefile.x86_64-unknown-linux_double' => Checking file-check results for gromacs-4.5.5nb1 ERROR: ************************************************************ ERROR: The following files are in the PLIST but not in /usr/pkg: ERROR: /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/template/Makefile.x86_64-unknown-linux_double ERROR: ************************************************************ ERROR: The following files are in /usr/pkg but not in the PLIST: ERROR: /tmp/pkgsrc/biology/gromacs/work/.destdir/usr/pkg/share/gromacs/template/Makefile.x86_64-unknown-linux-gnu_double *** Error code 1 Stop. bmake: stopped in /usr/pkgsrc/biology/gromacs *** Error code 1 Stop. bmake: stopped in /usr/pkgsrc/biology/gromacs