=> Bootstrap dependency digest>=20010302: found digest-20111104
=> Bootstrap dependency fetch-[0-9]*: found fetch-1.7
=> Checksum SHA1 OK for hwloc-1.4.tar.gz
=> Checksum RMD160 OK for hwloc-1.4.tar.gz
===> Installing dependencies for hwloc-1.4nb1
==========================================================================
The following variables will affect the build process of this package,
hwloc-1.4nb1.  Their current value is shown below:

        * CURSES_DEFAULT = ncurses

Based on these variables, the following variables have been set:

        * CURSES_TYPE = ncurses

You may want to abort the process now with CTRL-C and change their value
before continuing.  Be sure to run `/usr/pkg/bin/bmake clean' after
the changes.
==========================================================================
=> Build dependency libtool-base>=2.2.6bnb3: found libtool-base-2.2.6bnb8
=> Build dependency automake>=1.9: found automake-1.12.2
=> Build dependency autoconf>=2.58: found autoconf-2.69
=> Build dependency pkg-config>=0.25: found pkg-config-0.25nb1
=> Build dependency checkperms>=1.1: found checkperms-1.11
=> Full dependency libxml2>=2.8.0nb2: found libxml2-2.8.0nb3
=> Full dependency ncurses>=5.4nb1: found ncurses-5.9
===> Overriding tools for hwloc-1.4nb1
===> Extracting for hwloc-1.4nb1
===> Patching for hwloc-1.4nb1
=> Applying pkgsrc patches for hwloc-1.4nb1
===> Creating toolchain wrappers for hwloc-1.4nb1
===> Configuring for hwloc-1.4nb1
autoreconf: Entering directory `.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force -I ./config
configure.ac:153: warning: LT_INIT was called before AM_PROG_AR
/usr/pkg/share/aclocal-1.12/ar-lib.m4:15: AM_PROG_AR is expanded from...
configure.ac:153: the top level
autoreconf: configure.ac: tracing
configure.ac:153: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:73: AM_PROG_AR is expanded from...
configure.ac:153: the top level
autoreconf: running: libtoolize --copy --force
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `./config'.
libtoolize: copying file `./config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `./config'.
libtoolize: copying file `./config/libtool.m4'
libtoolize: copying file `./config/ltoptions.m4'
libtoolize: copying file `./config/ltsugar.m4'
libtoolize: copying file `./config/ltversion.m4'
libtoolize: copying file `./config/lt~obsolete.m4'
configure.ac:152: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from...
config/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
config/libtool.m4:4158: _LT_LINKER_SHLIBS is expanded from...
config/libtool.m4:5233: _LT_LANG_C_CONFIG is expanded from...
config/libtool.m4:138: _LT_SETUP is expanded from...
config/libtool.m4:67: LT_INIT is expanded from...
config/libtool.m4:103: AM_PROG_LIBTOOL is expanded from...
configure.ac:152: the top level
configure.ac:152: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from...
config/libtool.m4:4158: _LT_LINKER_SHLIBS is expanded from...
config/libtool.m4:5233: _LT_LANG_C_CONFIG is expanded from...
config/libtool.m4:138: _LT_SETUP is expanded from...
config/libtool.m4:67: LT_INIT is expanded from...
config/libtool.m4:103: AM_PROG_LIBTOOL is expanded from...
configure.ac:152: the top level
configure.ac:153: warning: LT_INIT was called before AM_PROG_AR
/usr/pkg/share/aclocal-1.12/ar-lib.m4:15: AM_PROG_AR is expanded from...
configure.ac:153: the top level
autoreconf: running: /usr/pkg/bin/autoconf --force
configure.ac:152: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from...
config/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
config/libtool.m4:4158: _LT_LINKER_SHLIBS is expanded from...
config/libtool.m4:5233: _LT_LANG_C_CONFIG is expanded from...
config/libtool.m4:138: _LT_SETUP is expanded from...
config/libtool.m4:67: LT_INIT is expanded from...
config/libtool.m4:103: AM_PROG_LIBTOOL is expanded from...
configure.ac:152: the top level
configure.ac:152: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from...
config/libtool.m4:4158: _LT_LINKER_SHLIBS is expanded from...
config/libtool.m4:5233: _LT_LANG_C_CONFIG is expanded from...
config/libtool.m4:138: _LT_SETUP is expanded from...
config/libtool.m4:67: LT_INIT is expanded from...
config/libtool.m4:103: AM_PROG_LIBTOOL is expanded from...
configure.ac:152: the top level
configure.ac:153: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:73: AM_PROG_AR is expanded from...
configure.ac:153: the top level
autoreconf: running: /usr/pkg/bin/autoheader --force
configure.ac:152: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from...
config/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
config/libtool.m4:4158: _LT_LINKER_SHLIBS is expanded from...
config/libtool.m4:5233: _LT_LANG_C_CONFIG is expanded from...
config/libtool.m4:138: _LT_SETUP is expanded from...
config/libtool.m4:67: LT_INIT is expanded from...
config/libtool.m4:103: AM_PROG_LIBTOOL is expanded from...
configure.ac:152: the top level
configure.ac:152: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from...
config/libtool.m4:4158: _LT_LINKER_SHLIBS is expanded from...
config/libtool.m4:5233: _LT_LANG_C_CONFIG is expanded from...
config/libtool.m4:138: _LT_SETUP is expanded from...
config/libtool.m4:67: LT_INIT is expanded from...
config/libtool.m4:103: AM_PROG_LIBTOOL is expanded from...
configure.ac:152: the top level
configure.ac:153: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:73: AM_PROG_AR is expanded from...
configure.ac:153: the top level
autoreconf: running: automake --add-missing --copy --force-missing
configure.ac:152: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from...
config/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
config/libtool.m4:4158: _LT_LINKER_SHLIBS is expanded from...
config/libtool.m4:5233: _LT_LANG_C_CONFIG is expanded from...
config/libtool.m4:138: _LT_SETUP is expanded from...
config/libtool.m4:67: LT_INIT is expanded from...
config/libtool.m4:103: AM_PROG_LIBTOOL is expanded from...
configure.ac:152: the top level
configure.ac:152: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from...
config/libtool.m4:4158: _LT_LINKER_SHLIBS is expanded from...
config/libtool.m4:5233: _LT_LANG_C_CONFIG is expanded from...
config/libtool.m4:138: _LT_SETUP is expanded from...
config/libtool.m4:67: LT_INIT is expanded from...
config/libtool.m4:103: AM_PROG_LIBTOOL is expanded from...
configure.ac:152: the top level
configure.ac:153: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:73: AM_PROG_AR is expanded from...
configure.ac:153: the top level
configure.ac:153: installing './config/ar-lib'
autoreconf: Leaving directory `.'
=> Modifying GNU configure scripts to avoid --recheck
=> Replacing config-guess with pkgsrc versions
=> Replacing config-sub with pkgsrc versions
=> Replacing install-sh with pkgsrc version
=> Checking for portability problems in extracted files

###
### Configuring hwloc distribution tarball
### Startup tests
###
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /tmp/pkgsrc/parallel/hwloc/work/.tools/bin/mkdir -p
checking for gawk... /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... yes
checking for hwloc version... 1.4
checking for x86_64-unknown-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... (cached) /bin/grep
checking for egrep... (cached) /bin/egrep
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking pkg-config is at least version 0.9.0... yes

###
### Configuring hwloc core
###
checking hwloc building mode... standalone
configure: hwloc builddir: /tmp/pkgsrc/parallel/hwloc/work/hwloc-1.4
configure: hwloc srcdir: /tmp/pkgsrc/parallel/hwloc/work/hwloc-1.4
checking if want hwloc maintainer support... enabled
checking for hwloc directory prefix... (none)
checking for hwloc symbol prefix... hwloc_
checking size of void *... 8
checking which OS support to include... Linux
checking which CPU support to include... x86_64
checking size of unsigned long... 8
checking size of unsigned int... 4
checking for the C compiler vendor... gnu
checking for __attribute__... yes
checking for __attribute__(aligned)... yes
checking for __attribute__(always_inline)... yes
checking for __attribute__(cold)... yes
checking for __attribute__(const)... yes
checking for __attribute__(deprecated)... yes
checking for __attribute__(format)... yes
checking for __attribute__(hot)... yes
checking for __attribute__(malloc)... yes
checking for __attribute__(may_alias)... yes
checking for __attribute__(no_instrument_function)... yes
checking for __attribute__(nonnull)... yes
checking for __attribute__(noreturn)... yes
checking for __attribute__(packed)... yes
checking for __attribute__(pure)... yes
checking for __attribute__(sentinel)... yes
checking for __attribute__(unused)... yes
checking for __attribute__(warn_unused_result)... yes
checking for __attribute__(weak_alias)... yes
checking if gcc supports -fvisibility... yes
checking whether to enable symbol visibility... yes (via -fvisibility=hidden)
configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS
checking for strncasecmp... yes
checking whether function strncasecmp is declared... yes
checking for strftime... yes
checking for setlocale... yes
checking for stdint.h... (cached) yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking for KAFFINITY... no
checking for PROCESSOR_CACHE_TYPE... no
checking for CACHE_DESCRIPTOR... no
checking for LOGICAL_PROCESSOR_RELATIONSHIP... no
checking for RelationProcessorPackage... no
checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no
checking for GROUP_AFFINITY... no
checking for PROCESSOR_RELATIONSHIP... no
checking for NUMA_NODE_RELATIONSHIP... no
checking for CACHE_RELATIONSHIP... no
checking for PROCESSOR_GROUP_INFO... no
checking for GROUP_RELATIONSHIP... no
checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no
checking for PSAPI_WORKING_SET_EX_BLOCK... no
checking for PSAPI_WORKING_SET_EX_INFORMATION... no
checking for main in -lgdi32... no
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking sys/lgrp_user.h usability... no
checking sys/lgrp_user.h presence... no
checking for sys/lgrp_user.h... no
checking kstat.h usability... no
checking kstat.h presence... no
checking for kstat.h... no
checking picl.h usability... no
checking picl.h presence... no
checking for picl.h... no
checking whether _SC_NPROCESSORS_ONLN is declared... yes
checking whether _SC_NPROCESSORS_CONF is declared... yes
checking whether _SC_NPROC_ONLN is declared... no
checking whether _SC_NPROC_CONF is declared... no
checking whether _SC_LARGE_PAGESIZE is declared... no
checking mach/mach_host.h usability... no
checking mach/mach_host.h presence... no
checking for mach/mach_host.h... no
checking mach/mach_init.h usability... no
checking mach/mach_init.h presence... no
checking for mach/mach_init.h... no
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/sysctl.h... yes
checking whether CTL_HW is declared... no
checking whether HW_NCPU is declared... no
checking for sysctl... yes
checking for sysctlbyname... no
checking for pthread_t... yes
checking whether function sched_setaffinity is declared... yes
checking for old prototype of sched_setaffinity... no
checking for working CPU_SET... yes
checking for working CPU_SET_S... yes
checking for working _syscall3... no
checking for KERRIGHED... no
checking for lib... no
checking for bash... /bin/sh
checking for ffs... yes
checking whether function ffs is declared... yes
checking for ffsl... yes
checking whether function ffsl is declared... yes
checking for fls... no
checking for flsl... no
checking for clz... no
checking for clzl... no
checking for openat... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for getpagesize... yes
checking for memalign... yes
checking for posix_memalign... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for uname... yes
checking pthread_np.h usability... no
checking pthread_np.h presence... no
checking for pthread_np.h... no
checking whether pthread_setaffinity_np is declared... yes
checking whether pthread_getaffinity_np is declared... yes
checking for sched_setaffinity... yes
checking for sys/cpuset.h... no
checking for library containing pthread_getthrds_np... no
checking numaif.h usability... no
checking numaif.h presence... no
checking for numaif.h... no
checking for PCI... no
checking pci/pci.h usability... no
checking pci/pci.h presence... no
checking for pci/pci.h... no
checking for LIBXML2... yes
checking for xmlNewDoc... yes
checking for final LIBXML2 support... yes
checking for cpuid... yes
checking for X... no

###
### Configuring hwloc documentation
###
checking if this is a developer build... no (doxygen generation is optional)
checking for x86_64-unknown-linux-doxygen... no
checking for doxygen... no
checking for x86_64-unknown-linux-pdflatex... no
checking for pdflatex... no
checking for x86_64-unknown-linux-makeindex... no
checking for makeindex... no
checking for x86_64-unknown-linux-fig2dev... no
checking for fig2dev... no
checking for x86_64-unknown-linux-gs... no
checking for gs... no
checking for x86_64-unknown-linux-epstopdf... no
checking for epstopdf... no
checking if can build doxygen docs... no
checking for a sed that does not truncate output... /bin/sed
checking if the sed -i option requires an argument... no
checking for x86_64-unknown-linux-w3m... no
checking for w3m... no
checking for x86_64-unknown-linux-lynx... no
checking for lynx... no
checking if can build top-level README... no
checking if will build doxygen docs... no
checking if will install doxygen docs... yes
checking whether to enable "picky" compiler mode... yes

###
### Configuring hwloc command line utilities
###
checking for CAIRO... no
checking for wchar_t... yes
checking for putwc... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking for setlocale... (cached) yes
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking for nl_langinfo... yes
checking termcap support using ncurses and ... no
checking termcap support using ncurses and -ltermcap... no
checking termcap support using ncurses and -lncursesw... no
checking termcap support using ncurses and -lncurses... yes
checking whether diff accepts -u... -u
checking whether diff accepts -w... -w

###
### Configuring hwloc tests
###
checking whether numa_bitmask_alloc is declared... no
checking infiniband/verbs.h usability... no
checking infiniband/verbs.h presence... no
checking for infiniband/verbs.h... no
checking myriexpress.h usability... no
checking myriexpress.h presence... no
checking for myriexpress.h... no
checking cuda.h usability... no
checking cuda.h presence... no
checking for cuda.h... no
checking cuda_runtime_api.h usability... no
checking cuda_runtime_api.h presence... no
checking for cuda_runtime_api.h... no
checking for xmllint... xmllint
checking for bunzip2... bunzip2
checking whether diff accepts -u... -u
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/x86_64-unknown-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 2097152
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/x86_64-unknown-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-unknown-linux-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-unknown-linux-ar... no
checking for ar... ar
checking for x86_64-unknown-linux-strip... no
checking for strip... strip
checking for x86_64-unknown-linux-ranlib... no
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory
yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... /bin/rm: cannot remove `conftest*': No such file or directory
no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-unknown-linux-ar... ar
checking the archiver (ar) interface... ar
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating include/Makefile
config.status: creating src/Makefile
config.status: creating doc/Makefile
config.status: creating doc/doxygen-config.cfg
config.status: creating utils/Makefile
config.status: creating hwloc.pc
config.status: creating tests/Makefile
config.status: creating tests/linux/Makefile
config.status: creating tests/linux/gather/Makefile
config.status: creating tests/xml/Makefile
config.status: creating tests/ports/Makefile
config.status: creating tests/rename/Makefile
config.status: creating tests/linux/hwloc-gather-topology
config.status: creating tests/linux/gather/test-gather-topology.sh
config.status: creating tests/linux/test-topology.sh
config.status: creating tests/xml/test-topology.sh
config.status: creating utils/hwloc-assembler-remote
config.status: creating utils/test-hwloc-assembler.sh
config.status: creating utils/test-hwloc-calc.sh
config.status: creating utils/test-hwloc-distances.sh
config.status: creating utils/test-hwloc-distrib.sh
config.status: creating utils/test-hwloc-ls.sh
config.status: creating include/private/autogen/config.h
config.status: creating include/hwloc/autogen/config.h
config.status: linking src/topology.c to tests/ports/topology.c
config.status: linking src/traversal.c to tests/ports/traversal.c
config.status: linking src/topology-synthetic.c to tests/ports/topology-synthetic.c
config.status: linking src/topology-solaris.c to tests/ports/topology-solaris.c
config.status: linking src/topology-solaris-chiptype.c to tests/ports/topology-solaris-chiptype.c
config.status: linking src/topology-aix.c to tests/ports/topology-aix.c
config.status: linking src/topology-osf.c to tests/ports/topology-osf.c
config.status: linking src/topology-windows.c to tests/ports/topology-windows.c
config.status: linking src/topology-darwin.c to tests/ports/topology-darwin.c
config.status: linking src/topology-freebsd.c to tests/ports/topology-freebsd.c
config.status: linking src/topology-hpux.c to tests/ports/topology-hpux.c
config.status: executing depfiles commands
config.status: executing chmoding-scripts commands
config.status: executing libtool commands
/bin/rm: cannot remove `libtoolT': No such file or directory

-----------------------------------------------------------------------------
Hwloc optional build support status (more details can be found above):

Probe / display PCI devices: no
Graphical output (Cairo):    no
XML input / output:          full
libnuma memory support:      no
-----------------------------------------------------------------------------

=> Modifying libtool scripts to use pkgsrc libtool