=> Bootstrap dependency digest>=20010302: found digest-20080510 => Bootstrap dependency fetch-[0-9]*: found fetch-1.7 WARNING: [license.mk] Every package should define a LICENSE. => Checksum SHA1 OK for octave-3.2.4.tar.bz2 => Checksum RMD160 OK for octave-3.2.4.tar.bz2 ===> Installing dependencies for octave-3.2.4nb2 ========================================================================== The supported build options for octave are: glpk graphicsmagick hdf5 pcre qhull The currently selected options are: glpk hdf5 pcre qhull You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.octave (not defined) ========================================================================== ========================================================================== The following variables will affect the build process of this package, octave-3.2.4nb2. Their current value is shown below: * CURSES_DEFAULT = ncurses * SSLBASE (defined) * SSLCERTS = /usr/pkg/etc/openssl/certs * SSLDIR = /usr/pkg/etc/openssl * SSLKEYS = /usr/pkg/etc/openssl/private Based on these variables, the following variables have been set: * CURSES_TYPE = ncurses * TERMCAP_TYPE = curses You may want to abort the process now with CTRL-C and change their value before continuing. Be sure to run `/usr/pkg/bin/bmake clean' after the changes. ========================================================================== => Build dependency bison>=1.875: found bison-2.5nb1 => Build dependency gperf>=2.7: found gperf-3.0.4 => Build dependency libtool-base>=2.2.6bnb3: found libtool-base-2.2.6bnb5 => Build dependency autoconf>=2.50: found autoconf-2.68 => Build dependency gsed>=3.0.2: found gsed-4.2.1nb1 => Build dependency perl>=5.0: found perl-5.14.2 => Build dependency pkg-config>=0.19: found pkg-config-0.25nb1 => Build dependency f2c>=20090411nb2: found f2c-20100903 => Build dependency kbproto>=1.0.2: found kbproto-1.0.5 => Build dependency xproto>=7.0.9: found xproto-7.0.18 => Build dependency xcb-proto>=1.4: found xcb-proto-1.6 => Build dependency checkperms>=1.1: found checkperms-1.11 => Full dependency gnuplot>=3.7: found gnuplot-4.4.3nb1 => Full dependency glpk>=4.35nb1: found glpk-4.45 => Full dependency hdf5>=1.6.5nb1: found hdf5-1.6.10nb1 => Full dependency zlib>=1.2.3: found zlib-1.2.3 => Full dependency pcre>=6.2: found pcre-8.13 => Full dependency qhull>=2003.1: found qhull-2003.1 => Full dependency libsndfile>=1.0.18: found libsndfile-1.0.25 => Full dependency ncurses>=5.4nb1: found ncurses-5.9 => Full dependency readline>=6.0: found readline-6.2 => Full dependency blas>=1.0nb3: found blas-1.1nb2 => Full dependency fftw>=3.1nb1: found fftw-3.3 => Full dependency lapack>=3.1.1: found lapack-3.1.1nb4 => Full dependency curl>=7.21.4nb1: found curl-7.21.7 => Full dependency libX11>=1.1: found libX11-1.3.5 => Full dependency desktop-file-utils>=0.10nb1: found desktop-file-utils-0.15nb1 => Full dependency libf2c>=20090201nb3: found libf2c-20090201nb3 ===> Overriding tools for octave-3.2.4nb2 ===> Extracting for octave-3.2.4nb2 find /tmp/pkgsrc/math/octave/work/octave-3.2.4/doc -type f -name '*.info*' -print | xargs rm -f mkdir /tmp/pkgsrc/math/octave/work/octave-3.2.4/src/pic ===> Patching for octave-3.2.4nb2 => Applying pkgsrc patches for octave-3.2.4nb2 ===> Creating toolchain wrappers for octave-3.2.4nb2 ===> Configuring for octave-3.2.4nb2 cd /tmp/pkgsrc/math/octave/work/octave-3.2.4 && autoconf configure.in:1666: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... configure.in:1666: the top level configure.in:1675: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... configure.in:1675: the top level => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for x86_64-unknown-linux-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes defining man1dir to be $(mandir)/man1 defining man1ext to be .1 defining doc_cache_file to be $(octetcdir)/doc-cache defining infofile to be $(infodir)/octave.info defining octincludedir to be $(includedir)/octave-$(version) defining fcnfiledir to be $(datadir)/octave/$(version)/m defining localfcnfiledir to be $(datadir)/octave/site/m defining localapifcnfiledir to be $(datadir)/octave/site/$(api_version)/m defining localverfcnfiledir to be $(datadir)/octave/$(version)/site/m defining octetcdir to be $(datadir)/octave/$(version)/etc defining octlibdir to be $(libdir)/octave-$(version) defining archlibdir to be $(libexecdir)/octave/$(version)/exec/$(canonical_host_type) defining localarchlibdir to be $(libexecdir)/octave/site/exec/$(canonical_host_type) defining localapiarchlibdir to be $(libexecdir)/octave/$(api_version)/site/exec/$(canonical_host_type) defining localverarchlibdir to be $(libexecdir)/octave/$(version)/site/exec/$(canonical_host_type) defining octfiledir to be $(libexecdir)/octave/$(version)/oct/$(canonical_host_type) defining localoctfiledir to be $(libexecdir)/octave/site/oct/$(canonical_host_type) defining localapioctfiledir to be $(libexecdir)/octave/site/oct/$(api_version)/$(canonical_host_type) defining localveroctfiledir to be $(libexecdir)/octave/$(version)/site/oct/$(canonical_host_type) defining imagedir to be $(datadir)/octave/$(version)/imagelib configure: defining __NO_MATH_INLINES avoids buggy GNU libc exp function checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for C++ support for new friend template declaration... yes checking if C++ library is ISO compliant... yes checking for broken C++ reinterpret_cast... no checking for x86_64-unknown-linux-gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking how to run the C preprocessor... gcc -E checking whether gcc needs -traditional... no checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for X... libraries , headers checking for XrmInitialize in -lX11... yes checking whether ld accepts -framework Carbon... no checking for sin in -lm... yes checking qhull/qhull_a.h usability... yes checking qhull/qhull_a.h presence... yes checking for qhull/qhull_a.h... yes checking for qh_qhull in -lqhull... yes checking whether the qhull library works... yes checking for pcre-config... yes checking whether pcre.h defines the macros we need... yes checking for pcre_compile... yes checking for regexec... yes checking for gzclearerr in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Gget_num_objs in -lhdf5... yes checking whether HDF5 library has required API... yes checking fftw3.h usability... yes checking fftw3.h presence... yes checking for fftw3.h... yes checking for fftw_plan_dft_1d in -lfftw3... yes checking for fftwf_plan_dft_1d in -lfftw3f... no FFTW library not found. Octave will use the (slower) FFTPACK library instead. checking glpk/glpk.h usability... no checking glpk/glpk.h presence... no checking for glpk/glpk.h... no checking glpk.h usability... yes checking glpk.h presence... yes checking for glpk.h... yes checking for glp_lpx_simplex in -lglpk... no checking for _glp_lpx_simplex in -lglpk... yes checking for curl_easy_escape in -lcurl... yes checking curl/curl.h usability... yes checking curl/curl.h presence... yes checking for curl/curl.h... yes checking for GraphicsMagick++-config... (cached) no checking whether ld accepts -framework OpenGL... no checking for GL/gl.h... no checking for OpenGL/gl.h... no checking for fltk-config... no checking for IEEE 754 data format... yes checking for x86_64-unknown-linux-ranlib... no checking for ranlib... ranlib checking for x86_64-unknown-linux-g77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking how to get verbose linking output from f77... --verbose checking for Fortran 77 libraries of f77... -L/tmp/pkgsrc/math/octave/work/.buildlink/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../x86_64-unknown-linux-gnu/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../.. -R/usr/pkg/lib -lhdf5 -lz -lm -lf2c checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, extra underscore configure: defining FFLAGS to be -O checking whether f77 accepts -ffloat-store... yes setting F77_FLOAT_STORE_FLAG to -ffloat-store checking for sgemm_... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -Wl,-framework -Wl,vecLib... no checking for sgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for sgemm_ in -lcxml... no checking for sgemm_ in -ldxml... no checking for sgemm_ in -lscs... no checking for sgemm_ in -lcomplib.sgimath... no checking for sgemm_ in -lblas... (cached) yes checking for sgemm_ in -lessl... no checking for sgemm_ in -lblas... (cached) yes checking whether LSAME is called correctly from Fortran... yes checking whether ISAMAX is called correctly from Fortran... yes checking whether SDOT is called correctly from Fortran... yes checking whether DDOT is called correctly from Fortran... yes checking whether CDOTU is called correctly from Fortran... yes checking whether ZDOTU is called correctly from Fortran... yes checking for cheev_... no checking for cheev_ in -llapack... yes checking for sqr1up_ in -lqrupdate... no configure: WARNING: qrupdate not found. The QR & Cholesky updating functions will be slow. checking suitesparse/amd.h usability... no checking suitesparse/amd.h presence... no checking for suitesparse/amd.h... no checking ufsparse/amd.h usability... no checking ufsparse/amd.h presence... no checking for ufsparse/amd.h... no checking amd/amd.h usability... no checking amd/amd.h presence... no checking for amd/amd.h... no checking amd.h usability... no checking amd.h presence... no checking for amd.h... no configure: WARNING: AMD not found. This will result in some lack of functionality for sparse matrices. checking for camd_postorder in -lcamd... no configure: WARNING: UMFPACK not found. This will result in some lack of functionality for sparse matrices. checking suitesparse/colamd.h usability... no checking suitesparse/colamd.h presence... no checking for suitesparse/colamd.h... no checking ufsparse/colamd.h usability... no checking ufsparse/colamd.h presence... no checking for ufsparse/colamd.h... no checking colamd/colamd.h usability... no checking colamd/colamd.h presence... no checking for colamd/colamd.h... no checking colamd.h usability... no checking colamd.h presence... no checking for colamd.h... no configure: WARNING: COLAMD not found. This will result in some lack of functionality for sparse matrices. checking suitesparse/ccolamd.h usability... no checking suitesparse/ccolamd.h presence... no checking for suitesparse/ccolamd.h... no checking ufsparse/ccolamd.h usability... no checking ufsparse/ccolamd.h presence... no checking for ufsparse/ccolamd.h... no checking ccolamd/ccolamd.h usability... no checking ccolamd/ccolamd.h presence... no checking for ccolamd/ccolamd.h... no checking ccolamd.h usability... no checking ccolamd.h presence... no checking for ccolamd.h... no configure: WARNING: CCOLAMD not found. This will result in some lack of functionality for sparse matrices. configure: WARNING: CHOLMOD not found. This will result in some lack of functionality for sparse matrices. checking suitesparse/cs.h usability... no checking suitesparse/cs.h presence... no checking for suitesparse/cs.h... no checking ufsparse/cs.h usability... no checking ufsparse/cs.h presence... no checking for ufsparse/cs.h... no checking cxsparse/cs.h usability... no checking cxsparse/cs.h presence... no checking for cxsparse/cs.h... no checking cs.h usability... no checking cs.h presence... no checking for cs.h... no configure: WARNING: CXSparse not found. This will result in some lack of functionality for sparse matrices. checking for F77_FUNC(dseupd,DSEUPD) in -larpack... no configure: WARNING: arpack not found. This will result in a lack of the eigs function. configure: defining FPICFLAG to be -fPIC configure: defining CPICFLAG to be -fPIC configure: defining CXXPICFLAG to be -fPIC configure: defining SHLEXT to be so configure: defining SHLLIB to be $(SHLEXT) configure: defining SHLBIN to be configure: defining SHLEXT_VER to be $(SHLEXT).$(version) configure: defining SHLLIB_VER to be $(SHLLIB).$(version) configure: defining SHLBIN_VER to be $(SHLBIN).$(version) configure: defining SHLLINKEXT to be configure: defining LIBPRE to be lib configure: defining SHLPRE to be lib configure: defining SHLLIBPRE to be lib configure: defining SHLBINPRE to be lib configure: defining SH_LD to be $(CXX) configure: defining SH_LDFLAGS to be -shared configure: defining DL_LD to be $(SH_LD) configure: defining DL_LDFLAGS to be $(SH_LDFLAGS) configure: defining MKOCTFILE_DL_LDFLAGS to be -shared -Wl,-Bsymbolic configure: defining SONAME_FLAGS to be -Wl,-soname -Wl,$@ configure: defining NO_OCT_FILE_STRIP to be false configure: defining RLD_FLAG to be -Wl,-rpath -Wl,$(octlibdir) configure: defining TEMPLATE_AR to be $(AR) configure: defining TEMPLATE_ARFLAGS to be rc configure: defining CRUFT_DLL_DEFS to be configure: defining OCTAVE_DLL_DEFS to be configure: defining OCTINTERP_DLL_DEFS to be configure: defining OCTGRAPHICS_DLL_DEFS to be configure: defining library_path_var to be LD_LIBRARY_PATH checking for gethostname... yes checking for getpwnam... yes checking for mode_t... yes checking for off_t... yes checking for pid_t... yes checking for size_t... yes checking for uid_t in sys/types.h... yes checking for dev_t... yes checking for ino_t... yes checking for nlink_t... yes checking for nlink_t... (cached) yes checking for long long int... yes checking for unsigned long long int... yes checking for sigset_t... yes checking for sig_atomic_t... yes checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for working alloca.h... yes checking for alloca... yes checking for an ANSI C-conforming const... yes checking whether defines placement delete operator... yes checking whether C++ supports dynamic auto arrays... yes checking whether fast integer arithmetics is usable... yes checking size of long double... 16 checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking whether time.h and sys/time.h may both be included... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking curses.h usability... yes checking curses.h presence... yes checking for curses.h... yes checking direct.h usability... no checking direct.h presence... no checking for direct.h... no checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for memory.h... (cached) yes checking nan.h usability... no checking nan.h presence... no checking for nan.h... no checking ncurses.h usability... yes checking ncurses.h presence... yes checking for ncurses.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... 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(cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking varargs.h usability... no checking varargs.h presence... no checking for varargs.h... no checking sstream usability... yes checking sstream presence... yes checking for sstream... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking termio.h usability... yes checking termio.h presence... yes checking for termio.h... yes checking sgtty.h usability... yes checking sgtty.h presence... yes checking for sgtty.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking fnmatch.h usability... yes checking fnmatch.h presence... yes checking for fnmatch.h... yes checking conio.h usability... no checking conio.h presence... no checking for conio.h... no checking for fnmatch... yes checking for glob... yes checking for atexit... yes checking for basename... yes checking for bcopy... yes checking for bzero... yes checking for canonicalize_file_name... yes checking for chmod... yes checking for dup2... yes checking for endgrent... yes checking for endpwent... yes checking for execvp... yes checking for expm1... yes checking for expm1f... yes checking for fcntl... yes checking for fork... yes checking for fstat... yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getgrent... yes checking for getgrgid... yes checking for getgrnam... yes checking for getpgrp... yes checking for getpid... yes checking for getppid... yes checking for getpwent... yes checking for getpwuid... yes checking for gettimeofday... yes checking for getuid... yes checking for getwd... yes checking for _kbhit... no checking for kill... yes checking for lgamma... yes checking for lgammaf... yes checking for lgamma_r... yes checking for lgammaf_r... yes checking for link... yes checking for localtime_r... yes checking for log1p... yes checking for log1pf... yes checking for lstat... yes checking for memmove... yes checking for mkdir... yes checking for mkfifo... yes checking for mkstemp... yes checking for on_exit... yes checking for pipe... yes checking for poll... yes checking for putenv... yes checking for raise... yes checking for readlink... yes checking for realpath... yes checking for rename... yes checking for resolvepath... no checking for rindex... yes checking for rmdir... yes checking for roundl... yes checking for select... yes checking for setgrent... yes checking for setlocale... yes checking for setpwent... yes checking for setvbuf... yes checking for sigaction... yes checking for siglongjmp... yes checking for sigpending... yes checking for sigprocmask... yes checking for sigsuspend... yes checking for snprintf... yes checking for stat... yes checking for strcasecmp... yes checking for strdup... yes checking for strerror... yes checking for stricmp... no checking for strncasecmp... yes checking for strnicmp... no checking for strptime... yes checking for strsignal... yes checking for symlink... yes checking for tempnam... yes checking for tgammaf... yes checking for trunc... yes checking for umask... yes checking for uname... yes checking for unlink... yes checking for usleep... yes checking for utime... yes checking for vfprintf... yes checking for vsprintf... yes checking for vsnprintf... yes checking for waitpid... yes checking for _chmod... no checking for _snprintf... no checking for x_utime... no checking for _utime32... no checking whether exp2 is declared... yes checking whether round is declared... yes checking whether tgamma is declared... yes checking whether tgammaf is declared... yes checking for exp2... yes checking for round... yes checking for tgamma... yes checking for tgamma... (cached) yes checking for strftime... yes checking for c99 vsnprintf... yes checking whether strptime is broken... no checking whether putenv uses malloc... no checking mach-o/dyld.h usability... no checking mach-o/dyld.h presence... no checking for mach-o/dyld.h... no checking for shl_load in -ldld... no checking for shl_load... no checking for shl_findsym... no checking for LoadLibrary in -lwsock32... no checking for LoadLibrary... no checking for dlopen in -ldl... yes checking for dlopen... yes checking for dlsym... yes checking for dlerror... yes checking for dlclose... yes checking whether g++ accepts -rdynamic... yes checking for struct timeval... yes checking whether gettimeofday can't accept two arguments... no checking for std::isnan in ... yes checking for std::isnan (float variant) in ... yes checking for std::isinf in ... yes checking for std::isinf (float variant) in ... yes checking for std::isfinite in ... yes checking for std::isfinite (float variant) in ... yes 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argument... no checking for tputs in -lncurses... yes checking for rl_set_keyboard_input_timeout in -lreadline... yes checking for struct exception in math.h... yes checking return type of signal handlers... void checking whether sys_siglist is declared... yes checking for type of signal functions... posix checking if signal handlers must be reinstalled when invoked... no checking for getrusage... yes checking for times... yes checking for gawk... /usr/bin/awk checking for gfind... /usr/bin/find checking for a usable sed... /usr/pkg/bin/sed checking for perl... /usr/pkg/bin/perl checking for python... no checking for flex... no checking for lex... no configure: WARNING: I didn't find flex, but it's only a problem if you need to reconstruct lex.cc checking for bison... bison -y checking whether ln -s works... yes checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking for desktop-file-install... desktop-file-install checking for gnuplot... gnuplot checking for less... less checking for gperf... gperf checking for gs... no configure: WARNING: I didn't find ghostscript, but it's only a problem if you need to reconstruct figures for the manual checking for makeinfo... /tmp/pkgsrc/math/octave/work/.tools/bin/makeinfo checking for texi2dvi... texi2dvi checking for texi2pdf... texi2pdf configure: defining UGLY_DEFS to be -DPACKAGE_NAME=\\\\\"\\\\\" -DPACKAGE_TARNAME=\\\\\"\\\\\" -DPACKAGE_VERSION=\\\\\"\\\\\" -DPACKAGE_STRING=\\\\\"\\\\\" -DPACKAGE_BUGREPORT=\\\\\"\\\\\" -DPACKAGE_URL=\\\\\"\\\\\" -DOCTAVE_SOURCE=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__EXTENSIONS__=1 -D_ALL_SOURCE=1 -D_GNU_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D_TANDEM_SOURCE=1 -DSEPCHAR=\':\' -DSEPCHAR_STR=\\\\\":\\\\\" -D__NO_MATH_INLINES=1 -DCXX_NEW_FRIEND_TEMPLATE_DECL=1 -DCXX_ISO_COMPLIANT_LIBRARY=1 -DHAVE_PTHREAD=1 -DHAVE_X_WINDOWS=1 -DHAVE_LIBM=1 -DHAVE_QHULL=1 -DHAVE_PCRE_COMPILE=1 -DHAVE_PCRE=1 -DHAVE_REGEXEC=1 -DHAVE_REGEX=1 -DHAVE_ZLIB_H=1 -DHAVE_ZLIB=1 -DHAVE_HDF5_H=1 -DHAVE_HDF5=1 -DHAVE_H5GGET_NUM_OBJS=1 -DHAVE_GLPK_H=1 -DHAVE_GLPK=1 -DHAVE_CURL_CURL_H=1 -DHAVE_CURL=1 -DHAVE_IEEE754_DATA_FORMAT=1 -DF77_FUNC\(name,NAME\)=name\ \#\#\ _ -DF77_FUNC_\(name,NAME\)=name\ \#\#\ __ -DHAVE_BLAS=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPWNAM=1 -DHAVE_DEV_T=1 -DHAVE_INO_T=1 -DHAVE_NLINK_T=1 -DHAVE_NLINK_T=1 -DHAVE_LONG_LONG_INT=1 -DHAVE_UNSIGNED_LONG_LONG_INT=1 -DHAVE_SIGSET_T=1 -DHAVE_SIG_ATOMIC_T=1 -DSIZEOF_SHORT=2 -DSIZEOF_INT=4 -DSIZEOF_LONG=8 -DSIZEOF_LONG_LONG=8 -DHAVE_ALLOCA_H=1 -DHAVE_ALLOCA=1 -DHAVE_PLACEMENT_DELETE=1 -DHAVE_DYNAMIC_AUTO_ARRAYS=1 -DHAVE_FAST_INT_OPS=1 -DSIZEOF_LONG_DOUBLE=16 -DSTDC_HEADERS=1 -DHAVE_DIRENT_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_WAIT_H=1 -DHAVE_ASSERT_H=1 -DHAVE_CURSES_H=1 -DHAVE_DLFCN_H=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_GRP_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_LOCALE_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NCURSES_H=1 -DHAVE_POLL_H=1 -DHAVE_PTHREAD_H=1 -DHAVE_PWD_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_SYS_PARAM_H=1 -DHAVE_SYS_POLL_H=1 -DHAVE_SYS_RESOURCE_H=1 -DHAVE_SYS_SELECT_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TIME_H=1 -DHAVE_SYS_TIMES_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_UTSNAME_H=1 -DHAVE_TERMCAP_H=1 -DHAVE_UNISTD_H=1 -DHAVE_UTIME_H=1 -DHAVE_SSTREAM=1 -DHAVE_TERMIOS_H=1 -DHAVE_TERMIO_H=1 -DHAVE_SGTTY_H=1 -DHAVE_GLOB_H=1 -DHAVE_FNMATCH_H=1 -DHAVE_FNMATCH=1 -DHAVE_GLOB=1 -DHAVE_ATEXIT=1 -DHAVE_BASENAME=1 -DHAVE_BCOPY=1 -DHAVE_BZERO=1 -DHAVE_CANONICALIZE_FILE_NAME=1 -DHAVE_CHMOD=1 -DHAVE_DUP2=1 -DHAVE_ENDGRENT=1 -DHAVE_ENDPWENT=1 -DHAVE_EXECVP=1 -DHAVE_EXPM1=1 -DHAVE_EXPM1F=1 -DHAVE_FCNTL=1 -DHAVE_FORK=1 -DHAVE_FSTAT=1 -DHAVE_GETCWD=1 -DHAVE_GETEGID=1 -DHAVE_GETEUID=1 -DHAVE_GETGID=1 -DHAVE_GETGRENT=1 -DHAVE_GETGRGID=1 -DHAVE_GETGRNAM=1 -DHAVE_GETPGRP=1 -DHAVE_GETPID=1 -DHAVE_GETPPID=1 -DHAVE_GETPWENT=1 -DHAVE_GETPWUID=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_GETUID=1 -DHAVE_GETWD=1 -DHAVE_KILL=1 -DHAVE_LGAMMA=1 -DHAVE_LGAMMAF=1 -DHAVE_LGAMMA_R=1 -DHAVE_LGAMMAF_R=1 -DHAVE_LINK=1 -DHAVE_LOCALTIME_R=1 -DHAVE_LOG1P=1 -DHAVE_LOG1PF=1 -DHAVE_LSTAT=1 -DHAVE_MEMMOVE=1 -DHAVE_MKDIR=1 -DHAVE_MKFIFO=1 -DHAVE_MKSTEMP=1 -DHAVE_ON_EXIT=1 -DHAVE_PIPE=1 -DHAVE_POLL=1 -DHAVE_PUTENV=1 -DHAVE_RAISE=1 -DHAVE_READLINK=1 -DHAVE_REALPATH=1 -DHAVE_RENAME=1 -DHAVE_RINDEX=1 -DHAVE_RMDIR=1 -DHAVE_ROUNDL=1 -DHAVE_SELECT=1 -DHAVE_SETGRENT=1 -DHAVE_SETLOCALE=1 -DHAVE_SETPWENT=1 -DHAVE_SETVBUF=1 -DHAVE_SIGACTION=1 -DHAVE_SIGLONGJMP=1 -DHAVE_SIGPENDING=1 -DHAVE_SIGPROCMASK=1 -DHAVE_SIGSUSPEND=1 -DHAVE_SNPRINTF=1 -DHAVE_STAT=1 -DHAVE_STRCASECMP=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRNCASECMP=1 -DHAVE_STRPTIME=1 -DHAVE_STRSIGNAL=1 -DHAVE_SYMLINK=1 -DHAVE_TEMPNAM=1 -DHAVE_TGAMMAF=1 -DHAVE_TRUNC=1 -DHAVE_UMASK=1 -DHAVE_UNAME=1 -DHAVE_UNLINK=1 -DHAVE_USLEEP=1 -DHAVE_UTIME=1 -DHAVE_VFPRINTF=1 -DHAVE_VSPRINTF=1 -DHAVE_VSNPRINTF=1 -DHAVE_WAITPID=1 -DHAVE_DECL_EXP2=1 -DHAVE_DECL_ROUND=1 -DHAVE_DECL_TGAMMA=1 -DHAVE_DECL_TGAMMAF=1 -DHAVE_EXP2=1 -DHAVE_ROUND=1 -DHAVE_TGAMMA=1 -DHAVE_TGAMMA=1 -DHAVE_STRFTIME=1 -DHAVE_C99_VSNPRINTF=1 -DHAVE_LIBDL=1 -DHAVE_DLOPEN=1 -DHAVE_DLSYM=1 -DHAVE_DLERROR=1 -DHAVE_DLCLOSE=1 -DHAVE_DLOPEN_API=1 -DENABLE_DYNAMIC_LINKING=1 -DHAVE_TIMEVAL=1 -DHAVE_CMATH_ISNAN=1 -DHAVE_CMATH_ISNANF=1 -DHAVE_CMATH_ISINF=1 -DHAVE_CMATH_ISINFF=1 -DHAVE_CMATH_ISFINITE=1 -DHAVE_CMATH_ISFINITEF=1 -DHAVE_FINITE=1 -DHAVE_ISNAN=1 -DHAVE_ISINF=1 -DHAVE_COPYSIGN=1 -DHAVE_DECL_SIGNBIT=1 -DHAVE_ACOSH=1 -DHAVE_ACOSHF=1 -DHAVE_ASINH=1 -DHAVE_ASINHF=1 -DHAVE_ATANH=1 -DHAVE_ATANHF=1 -DHAVE_ERF=1 -DHAVE_ERFF=1 -DHAVE_ERFC=1 -DHAVE_ERFCF=1 -DHAVE_EXP2F=1 -DHAVE_LOG2=1 -DHAVE_LOG2F=1 -DHAVE_HYPOTF=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_RDEV=1 -DHAVE_STRUCT_TM_TM_ZONE=1 -DHAVE_TM_ZONE=1 -DUSE_READLINE=1 -DEXCEPTION_IN_MATH=1 -DRETSIGTYPE=void -DHAVE_DECL_SYS_SIGLIST=1 -DHAVE_POSIX_SIGNALS=1 -DRETSIGTYPE_IS_VOID=1 -DHAVE_GETRUSAGE=1 -DHAVE_TIMES=1 checking whether gcc accepts -Wall... yes adding -Wall to WARN_CFLAGS checking whether gcc accepts -W... yes adding -W to WARN_CFLAGS checking whether gcc accepts -Wshadow... yes adding -Wshadow to WARN_CFLAGS checking whether gcc accepts -Wformat... yes adding -Wformat to WARN_CFLAGS checking whether g++ accepts -Wall... yes adding -Wall to WARN_CXXFLAGS checking whether g++ accepts -W... yes adding -W to WARN_CXXFLAGS checking whether g++ accepts -Wshadow... yes adding -Wshadow to WARN_CXXFLAGS checking whether g++ accepts -Wold-style-cast... yes adding -Wold-style-cast to WARN_CXXFLAGS checking whether g++ accepts -Wformat... yes adding -Wformat to WARN_CXXFLAGS configure: creating ./config.status config.status: creating octMakefile config.status: creating Makeconf config.status: creating test/Makefile config.status: creating doc/Makefile config.status: creating doc/faq/Makefile config.status: creating doc/interpreter/Makefile config.status: creating doc/liboctave/Makefile config.status: creating doc/refcard/Makefile config.status: creating emacs/Makefile config.status: creating examples/Makefile config.status: creating examples/@polynomial/Makefile config.status: creating examples/@FIRfilter/Makefile config.status: creating liboctave/Makefile config.status: creating liboctave/oct-types.h config.status: creating src/Makefile config.status: creating src/mxarray.h config.status: creating libcruft/Makefile config.status: creating libcruft/Makerules config.status: creating libcruft/amos/Makefile config.status: creating libcruft/blas/Makefile config.status: creating libcruft/daspk/Makefile config.status: creating libcruft/dasrt/Makefile config.status: creating libcruft/dassl/Makefile config.status: creating libcruft/fftpack/Makefile config.status: creating libcruft/lapack/Makefile config.status: creating libcruft/misc/Makefile config.status: creating libcruft/odepack/Makefile config.status: creating libcruft/ordered-qz/Makefile config.status: creating libcruft/quadpack/Makefile config.status: creating libcruft/ranlib/Makefile config.status: creating libcruft/slatec-fn/Makefile config.status: creating libcruft/slatec-err/Makefile config.status: creating libcruft/villad/Makefile config.status: creating libcruft/blas-xtra/Makefile config.status: creating libcruft/lapack-xtra/Makefile config.status: creating config.h config.status: executing Makefile commands === configuring in scripts (/tmp/pkgsrc/math/octave/work/octave-3.2.4/scripts) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--enable-dl' '--enable-static' '--disable-shared' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--infodir=/usr/pkg/share/info' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/pkg/include -I/usr/pkg/include/ncurses -I/usr/include' 'LDFLAGS=-L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/pkg/include/ncurses -I/usr/include' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/pkg/include -I/usr/pkg/include/ncurses -I/usr/include' 'F77=f77' 'FFLAGS=-O' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk configure: creating ./config.status config.status: creating Makefile config.status: creating audio/Makefile config.status: creating deprecated/Makefile config.status: creating elfun/Makefile config.status: creating general/Makefile config.status: creating geometry/Makefile config.status: creating help/Makefile config.status: creating image/Makefile config.status: creating io/Makefile config.status: creating linear-algebra/Makefile config.status: creating miscellaneous/Makefile config.status: creating optimization/Makefile config.status: creating path/Makefile config.status: creating pkg/Makefile config.status: creating plot/Makefile config.status: creating polynomial/Makefile config.status: creating set/Makefile config.status: creating signal/Makefile config.status: creating sparse/Makefile config.status: creating specfun/Makefile config.status: creating special-matrix/Makefile config.status: creating startup/Makefile config.status: creating statistics/Makefile config.status: creating statistics/base/Makefile config.status: creating statistics/distributions/Makefile config.status: creating statistics/models/Makefile config.status: creating statistics/tests/Makefile config.status: creating strings/Makefile config.status: creating time/Makefile config.status: creating testfun/Makefile configure: Octave is now configured for x86_64-unknown-linux-gnu Source directory: . Installation prefix: /usr/pkg C compiler: gcc -Wall -W -Wshadow -Wformat -O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/pkg/include -I/usr/pkg/include/ncurses -I/usr/include C++ compiler: g++ -Wall -W -Wshadow -Wold-style-cast -Wformat -O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/pkg/include -I/usr/pkg/include/ncurses -I/usr/include Fortran compiler: f77 -O Fortran libraries: -L/tmp/pkgsrc/math/octave/work/.buildlink/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../x86_64-unknown-linux-gnu/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../.. -R/usr/pkg/lib -lhdf5 -lz -lm -lf2c BLAS libraries: -llapack -lblas FFTW libraries: GLPK libraries: -lglpk UMFPACK libraries: AMD libraries: CAMD libraries: COLAMD libraries: CCOLAMD libraries: CHOLMOD libraries: CXSPARSE libraries: ARPACK libraries: QRUPDATE libraries: HDF5 libraries: -lhdf5 CURL libraries: -lcurl REGEX libraries: -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lpcre QHULL libraries: -lqhull OPENGL libraries: FLTK backend libs: X11 include flags: X11 libraries: -lX11 CARBON libraries: PTHREAD flags -pthread PTHREAD libraries LIBS: -lreadline -lncurses -ldl -lhdf5 -lz -lm Default pager: less gnuplot: gnuplot Magick config: no Do internal array bounds checking: false Build static libraries: true Build shared libraries: false Dynamic Linking: true (dlopen) Include support for GNU readline: true 64-bit array dims and indexing: false configure: WARNING: You used --enable-dl but not --enable-shared. configure: WARNING: Are you sure that is what you want to do? configure: WARNING: I didn't find flex, but it's only a problem if you need to reconstruct lex.cc configure: WARNING: UMFPACK not found. This will result in some lack of functionality for sparse matrices. configure: WARNING: qrupdate not found. The QR & Cholesky updating functions will be slow. configure: WARNING: AMD not found. This will result in some lack of functionality for sparse matrices. configure: WARNING: COLAMD not found. This will result in some lack of functionality for sparse matrices. configure: WARNING: CCOLAMD not found. This will result in some lack of functionality for sparse matrices. configure: WARNING: CHOLMOD not found. This will result in some lack of functionality for sparse matrices. configure: WARNING: CXSparse not found. This will result in some lack of functionality for sparse matrices. configure: WARNING: arpack not found. This will result in a lack of the eigs function. configure: WARNING: FFTW library not found. Octave will use the (slower) FFTPACK library instead. configure: WARNING: GraphicsMagick++ config script not found. Assuming GraphicsMagic++ library and header files are missing, so imread will not be fully functional configure: WARNING: I didn't find ghostscript, but it's only a problem if you need to reconstruct figures for the manual configure: WARNING: "FLTK config script not found. Native graphics will be disabled." configure: WARNING: configure: WARNING: I didn't find the necessary libraries to compile native configure: WARNING: graphics. It isn't necessary to have native graphics configure: WARNING: but you will have to use gnuplot or you won't be able configure: WARNING: to use any of Octave's plotting commands configure: WARNING: configure: NOTE: libraries may be skipped if a library is not found OR if the library on your system is missing required features. => Modifying libtool scripts to use pkgsrc libtool