=> Bootstrap dependency digest>=20010302: found digest-20080510 => Bootstrap dependency fetch-[0-9]*: found fetch-1.7 WARNING: [license.mk] Every package should define a LICENSE. => Checksum SHA1 OK for mpich2-1.3.1.tar.gz => Checksum RMD160 OK for mpich2-1.3.1.tar.gz ===> Installing dependencies for mpich2-1.3.1 ========================================================================== The supported build options for mpich2 are: debug mpich-mpd threads The currently selected options are: threads You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.mpich (not defined) ========================================================================== => Build dependency f2c>=20090411nb2: found f2c-20100903 => Build dependency openpa>=1.0.1: found openpa-1.0.2 => Build dependency checkperms>=1.1: found checkperms-1.11 => Full dependency bash-[0-9]*: found bash-4.2nb1 => Full dependency perl>=5.0: found perl-5.14.2 => Full dependency libf2c>=20090201nb3: found libf2c-20090201nb3 ===> Overriding tools for mpich2-1.3.1 ===> Extracting for mpich2-1.3.1 ===> Patching for mpich2-1.3.1 => Applying pkgsrc patches for mpich2-1.3.1 ===> Creating toolchain wrappers for mpich2-1.3.1 ===> Configuring for mpich2-1.3.1 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files Configuring MPICH2 version 1.3.1 with '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib' 'LIBS=' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include' 'F77=f77' 'FFLAGS=-O' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include' Running on system: Linux x86_64-linux 2.6.37.4-altar #1 SMP Fri Mar 18 23:16:21 NZDT 2011 x86_64 x86_64 x86_64 GNU/Linux checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for grep that handles long lines and -e... (cached) /bin/grep checking for fgrep... /bin/grep -F Executing mpich2prereq in /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3 with Executing mpich2prereq in /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis configure: ===== configuring src/mpl ===== configure: executing: /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/configure '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include ' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS= ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include ' 'F77=f77' 'FFLAGS=-O ' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include ' --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /tmp/pkgsrc/parallel/mpi-ch/work/.tools/bin/mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for style of include used by make... 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BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/x86_64-unknown-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-unknown-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-unknown-linux-ar... no checking for ar... ar checking for x86_64-unknown-linux-strip... no checking for strip... strip checking for x86_64-unknown-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for x86_64-unknown-linux-gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for variable argument list macro functionality... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines configure: ===== done with src/mpl configure ===== sourcing /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/pm/hydra/mpich2prereq sourcing /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/pm/gforker/mpich2prereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... no checking for multiple weak symbol support... yes checking for x86_64-unknown-linux-ifort... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from f77... --verbose checking for Fortran 77 libraries of f77... -L/tmp/pkgsrc/parallel/mpi-ch/work/.buildlink/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../x86_64-unknown-linux-gnu/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../.. -R/usr/pkg/lib -lf2c -lm checking whether f77 accepts the FLIBS found by autoconf... yes checking whether C can link with -L/tmp/pkgsrc/parallel/mpi-ch/work/.buildlink/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../x86_64-unknown-linux-gnu/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../.. -R/usr/pkg/lib -lf2c -lm... yes checking for linker for Fortran main programs... Use Fortran to link programs checking whether Fortran 77 and C objects are compatible... yes checking for Fortran 77 name mangling... lower doubleunderscore checking what libraries are needed to link Fortran programs with C routines that use stdio... none checking whether Fortran init will work with C... yes checking whether Fortran accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking for which Fortran libraries are needed to link C with Fortran... none checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking for c++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 4 . 5 checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/pkg/bin/perl checking for ar... ar checking for ranlib... ranlib checking for killall... killall checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether install works... yes checking for x86_64-unknown-linux-ranlib... (cached) ranlib checking whether install breaks libraries... no checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /usr/pkg/bin/bash checking whether /usr/pkg/bin/bash supports arrays... yes checking for doctext... false checking for location of doctext style files... unavailable checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes Using gcc to determine dependencies checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH2 does not handle this case automatically and you should avoid assumed extents for structures containing float types. checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of void *... 8 checking for ANSI C header files... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 16 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 32 checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking inttypes.h usability... yes checking inttypes.h presence... yes checking for inttypes.h... yes checking stdint.h usability... yes checking stdint.h presence... yes checking for stdint.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... no checking for C type matching Fortran integer... int checking for size of MPI_Status... 20 checking for values of Fortran logicals... True is 1 and False is 0 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... 4 checking the minimum alignment of Fortran common block of 5 integers... 16, too small! reset to 32 checking for Fortran 90 integer kind for 8-byte integers... unavailable checking for Fortran 90 integer kind for 4-byte integers... unavailable configure: WARNING: Unable to determine Fortran 90 KIND values for either address-sized integers or offset-sized integers. Using 4 in that case. checking if real*8 is supported in Fortran 90... no checking size of bool... 1 checking how to run the C++ preprocessor... g++ -E checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 32 checking if char * pointers use byte addresses... yes checking for alignment restrictions on ... no checking for alignment restrictions on int32_t... no checking size of MPIR_Bsend_data_t... 88 checking for gcc __asm__ and pentium cmpxchgl instruction... no checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes checking for gcc __asm__ and IA64 xchg4 instruction... no checking for ANSI C header files... (cached) yes checking stdlib.h usability... yes checking stdlib.h presence... yes checking for stdlib.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/types.h usability... yes checking sys/types.h presence... yes checking for sys/types.h... yes checking string.h usability... yes checking string.h presence... yes checking for string.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stddef.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking unistd.h usability... yes checking unistd.h presence... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... no checking whether strerror_r needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for va_copy... yes checking for variable argument list macro functionality... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for clock_gettime... no checking for clock_getres... no checking for gethrtime... no checking for gettimeofday... yes sourcing /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/setup_device RUNNING SETUP_DEVICE FOR THE CH3 DEVICE sourcing /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/setup_channel RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking for thread local storage specifier... __thread checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking for getpid... yes checking for sched_setaffinity... yes checking for sched_getaffinity... yes checking for bindprocessor... no checking for thread_policy_set... no checking whether cpu_set_t available... yes checking whether the CPU_SET and CPU_ZERO macros are defined... no configure: ===== configuring src/mpid/ch3 ===== configure: executing: /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/configure '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' --disable-option-checking RUNNING CONFIGURE FOR CH3 DEVICE checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking uuid/uuid.h usability... yes checking uuid/uuid.h presence... yes checking for uuid/uuid.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking whether CPP accepts variable length argument lists... yes checking whether byte ordering is bigendian... no checking whether we can use struct ifconf... yes configure: ===== configuring channels/nemesis ===== configure: executing: /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/configure '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' '--disable-option-checking' --disable-option-checking RUNNING CONFIGURE FOR THE NEMESIS CHANNEL checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for inline... inline checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for pid_t... yes checking for net/if.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for unistd.h... (cached) yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/types.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking for netinet/in.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking for signal... yes checking for mkstemp... yes checking for rand... yes checking for srand... yes checking for OpenPA atomic primitive availability... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking whether struct hostent contains h_addr_list... yes checking whether we can use struct ifconf... yes checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating nemesis/Makefile config.status: creating nemesis/src/Makefile config.status: creating nemesis/utils/Makefile config.status: creating nemesis/utils/replacements/Makefile config.status: creating nemesis/utils/monitor/Makefile config.status: creating nemesis/netmod/Makefile config.status: creating nemesis/netmod/elan/Makefile config.status: creating nemesis/netmod/gm/Makefile config.status: creating nemesis/netmod/mx/Makefile config.status: creating nemesis/netmod/tcp/Makefile config.status: creating nemesis/netmod/psm/Makefile config.status: creating nemesis/netmod/newmad/Makefile config.status: creating nemesis/netmod/none/Makefile config.status: creating localdefs config.status: creating nemesis/include/mpid_nem_net_module_defs.h config.status: creating nemesis/src/mpid_nem_net_array.c config.status: creating include/mpidi_ch3i_nemesis_conf.h configure: ===== done with channels/nemesis configure ===== configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating util/Makefile config.status: creating channels/Makefile config.status: creating util/ftb/Makefile config.status: creating localdefs config.status: creating include/mpid_thread.h config.status: creating include/mpidi_ch3_conf.h config.status: executing default-1 commands copying ./../common/thread/mpid_thread_mpe.c to src/mpid_thread.c configure: ===== done with src/mpid/ch3 configure ===== configure: ===== configuring src/mpi/romio ===== configure: executing: /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpi/romio/configure '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' --disable-option-checking Configuring with args --datadir=/usr/pkg/share/mpich2 --sysconfdir=/usr/pkg/etc/mpich --docdir=/usr/pkg/share/doc/mpich2 --htmldir=/usr/pkg/share/doc/mpich2/html --with-pm=hydra:gforker --with-hydra-bindlib=plpa --disable-fc --with-openpa-prefix=/usr/pkg --with-thread-package=posix --prefix=/usr/pkg --build=x86_64-unknown-linux --host=x86_64-unknown-linux --mandir=/usr/pkg/share/man build_alias=x86_64-unknown-linux host_alias=x86_64-unknown-linux CC=gcc CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2 LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib LIBS=-lpthread CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers F77=f77 FFLAGS=-O -O2 FC=f77 CXX=g++ CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2 --disable-option-checking checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... LINUX ROMIO home directory is /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpi/romio checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for x86_64-unknown-linux-ifort... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking how to run the C preprocessor... gcc -E checking for memalign... yes checking Fortran external names Fortran externals are lower case and have two trailing underscores checking for inline... inline checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... 8 checking for f90... no checking for xlf90... no checking for pgf90... no checking for ifort... no checking for epcf90... no checking for f95... no checking for fort... no checking for xlf95... no checking for lf95... no checking for pathf90... no checking for g95... no checking for fc... no checking for ifc... no checking for efc... no checking for extension for Fortran 90 programs... unknown! checking for Fortran 90 KIND parameter for 8-byte integers... unavailable checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH2 checking for weak symbol support... pragma weak checking that weak symbols are visible to other files... yes checking that the compiler correctly implements weak symbols... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... yes checking if sys/aio.h exists and can be compiled... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... yes checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... yes checking for aio_sigevent member of aiocb structure... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for unistd.h... (cached) yes checking for large file defines... yes setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes setting CC to gcc setting F77 to f77 setting TEST_CC to /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc setting TEST_F77 to /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77 setting CFLAGS to -O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2 -DFORTRANDOUBLEUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 setting USER_CFLAGS to setting USER_FFLAGS to configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi-io/Makefile config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating adio/common/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating adio/ad_nfs/Makefile config.status: creating adio/ad_ufs/Makefile config.status: creating adio/ad_bgl/Makefile config.status: creating adio/ad_bglockless/Makefile config.status: creating adio/ad_panfs/Makefile config.status: creating adio/ad_xfs/Makefile config.status: creating adio/ad_sfs/Makefile config.status: creating adio/ad_pfs/Makefile config.status: creating adio/ad_testfs/Makefile config.status: creating adio/ad_pvfs/Makefile config.status: creating adio/ad_pvfs2/Makefile config.status: creating adio/ad_gridftp/Makefile config.status: creating adio/ad_lustre/Makefile config.status: creating adio/ad_zoidfs/Makefile config.status: creating mpi-io/fortran/Makefile config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating mpi-io/glue/mpich2/Makefile config.status: creating mpi-io/glue/mpich1/Makefile config.status: creating mpi-io/glue/default/Makefile config.status: creating common/dataloop/Makefile config.status: creating adio/include/romioconf.h config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: ===== configuring src/pmi/simple ===== configure: executing: /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/pmi/simple/configure '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' --disable-option-checking RUNNING CONFIGURE FOR THE SIMPLE PMI checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for strings.h... (cached) yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncasecmp... yes checking for sys/types.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating pmiconf.h configure: ===== done with src/pmi/simple configure ===== configure: ===== configuring src/pm/hydra ===== configure: executing: /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/pm/hydra/configure '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of unsigned long... 8 checking for size_t... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/x86_64-unknown-linux-gnu/bin/ld checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/x86_64-unknown-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-unknown-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-unknown-linux-ar... ar checking for x86_64-unknown-linux-strip... no checking for strip... strip checking for x86_64-unknown-linux-ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove `conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking for variable argument list macro functionality... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking for doxygen... no checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for netdb.h... (cached) yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for socket in -lsocket... no checking for gethostbyname in -lnsl... yes checking for gettimeofday... yes checking for time... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strerror... yes checking for strsignal... yes checking for stat... yes checking for getifaddrs... yes checking for fcntl... yes checking for alarm... yes checking for environ in unistd.h... no checking for manually declared extern environ... yes checking boot-strap server... ssh,rsh,fork,slurm,ll,lsf,sge,persist checking resource management kernel... none,pbs checking process manager... pmiserv checking user interface... mpich checking desired process binding libraries... plpa configure: ===== configuring tools/bind/plpa/plpa ===== configure: executing: /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/pm/hydra/tools/bind/plpa/plpa/configure '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2 ' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lnsl' 'LIBS=' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' '--disable-option-checking' --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking for PLPA version... 1.3.2 checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking whether to enable "picky" compiler mode... no (default) checking for flex... no checking for lex... no checking for bison... no checking for byacc... no checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for syscall... yes checking sys/syscall.h usability... yes checking sys/syscall.h presence... yes checking for sys/syscall.h... yes checking for unistd.h... (cached) yes checking for __NR_sched_setaffinity... yes checking for __NR_sched_getaffinity... yes checking for PLPA building mode... standalone checking if want PLPA maintainer support... disabled checking for PLPA config prefix... . checking for PLPA symbol prefix... plpa_ checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no configure: WARNING: valgrind.h not found checking whether to build PLPA executables... yes checking for inline... inline checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/x86_64-unknown-linux-gnu/bin/ld checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/x86_64-unknown-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-unknown-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-unknown-linux-ar... ar checking for x86_64-unknown-linux-strip... no checking for strip... strip checking for x86_64-unknown-linux-ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating ./config.status config.status: creating ./Makefile config.status: creating ./config/Makefile config.status: creating ./src/Makefile config.status: creating ./src/libplpa/Makefile config.status: creating ./src/plpa-info/Makefile config.status: creating ./src/plpa-taskset/Makefile config.status: creating ./src/libplpa/plpa_config.h config.status: creating ./src/libplpa/plpa.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory configure: ===== done with tools/bind/plpa/plpa configure ===== checking if plpa works correctly... yes checking available process binding libraries... plpa checking checkpointing library... none checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... none checking error checking... yes checking warnings... no checking profiling... yes checking libftb.h usability... no checking libftb.h presence... no checking for libftb.h... no checking for FTB_Connect in -lftb... no checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating tools/bootstrap/include/bsci.h config.status: creating tools/rmk/src/rmki_init.c config.status: creating tools/rmk/include/rmki.h config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory configure: ===== done with src/pm/hydra configure ===== configure: ===== configuring src/pm/gforker ===== configure: executing: /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/pm/gforker/configure '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' --disable-option-checking RUNNING CONFIGURE FOR THE GFORKER PM checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for grep that handles long lines and -e... (cached) /bin/grep checking for fgrep... /bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strdup... yes checking whether strdup needs a declaration... no checking for setsid... yes checking for isatty... yes checking for getsid... yes checking for library containing socketpair... none required checking how to run the C preprocessor... gcc -E checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for sys/types.h... (cached) yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking sys/ptrace.h usability... yes checking sys/ptrace.h presence... yes checking for sys/ptrace.h... yes checking for strsignal... yes checking for sigaction... yes checking for signal... yes checking for sigset... yes checking for struct sigaction... yes configure: ===== configuring ../util ===== configure: executing: /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/pm/gforker/../util/configure '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2 ' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' '--disable-option-checking' --disable-option-checking RUNNING CONFIGURE FOR THE PM UTILITIES checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for ar... ar checking for x86_64-unknown-linux-ranlib... ranlib checking for grep that handles long lines and -e... (cached) /bin/grep checking for fgrep... /bin/grep -F checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for strtol... yes checking for time... yes checking for gettimeofday... yes checking whether struct hostent contains h_addr_list... yes checking how to run the C preprocessor... gcc -E checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for pid_t... yes checking for setsid... yes checking for isatty... yes checking for getsid... yes checking whether getsid is prototyped in unistd.h... yes checking for unsetenv... yes checking for cygwin1.dll in /bin... yes checking for environ in unistd.h... no checking for extern environ in runtime... yes checking for library containing socketpair... none required checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking sys/ptrace.h usability... yes checking sys/ptrace.h presence... yes checking for sys/ptrace.h... yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for unistd.h... (cached) yes checking whether struct iovec is defined in sys/uio.h... yes checking for strsignal... yes checking whether strsignal needs a declaration... no checking for snprintf... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking whether snprintf needs a declaration... no checking whether strdup needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for gethostname... yes checking whether gethostname needs a declaration... no checking for select... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking whether FD_ZERO works... yes checking for sched_setaffinity... yes checking for sched_getaffinity... yes checking for bindprocessor... no checking for thread_policy_set... no checking whether cpu_set_t available... yes checking whether the CPU_SET and CPU_ZERO macros are defined... no checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for stdlib.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking wait.h usability... yes checking wait.h presence... yes checking for wait.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes configure: creating ./config.status config.status: creating Makefile config.status: creating test/Makefile config.status: creating pmutilconf.h configure: ===== done with ../util configure ===== checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking wait.h usability... yes checking wait.h presence... yes checking for wait.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating forkerconf.h configure: ===== done with src/pm/gforker configure ===== configure: ===== configuring src/mpe2 ===== configure: executing: /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/configure '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' --disable-option-checking Configuring MPE Profiling System with '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' '--disable-option-checking' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' checking for current directory name... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2 checking gnumake... no checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH This MPE build is part of the MPICH2 build checking for leftover Makefiles in subpackages ... none checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether MPI_CC has been set ... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc checking for x86_64-unknown-linux-g77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking whether MPI_F77 has been set ... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77 checking how to get verbose linking output from f77... --verbose checking for Fortran 77 libraries of f77... -L/tmp/pkgsrc/parallel/mpi-ch/work/.buildlink/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../x86_64-unknown-linux-gnu/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../.. -R/usr/pkg/lib -lrt -lpthread -lf2c -lm checking whether f77 accepts the FLIBS found by autoconf... yes checking whether C can link with -L/tmp/pkgsrc/parallel/mpi-ch/work/.buildlink/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../x86_64-unknown-linux-gnu/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../.. -R/usr/pkg/lib -lrt -lpthread -lf2c -lm... yes checking for linker for Fortran main programs... Use Fortran to link programs checking whether Fortran 77 and C objects are compatible... yes checking for Fortran 77 name mangling... lower doubleunderscore checking what libraries are needed to link Fortran programs with C routines that use stdio... none checking for Fortran 77 flag for library directories... -L checking for include directory flag for Fortran... -I checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether install works... yes checking for x86_64-unknown-linux-ranlib... ranlib checking whether install breaks libraries... no configure: creating ./config.status config.status: creating Makefile config.status: creating sbin/mpetestlink config.status: creating sbin/mpetestexec config.status: creating sbin/mpetestexeclog config.status: creating sbin/mpeinstall config.status: creating sbin/mpecheckinstall config.status: WARNING: 'sbin/mpecheckinstall.in' seems to ignore the --datarootdir setting config.status: creating sbin/mpecheckbuild config.status: creating etc/mpe_help.conf config.status: creating etc/mpe_f77env.conf config.status: creating mpe_conf.h config.status: executing default-1 commands === configuring in src/misc (/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/misc) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' --cache-file=/dev/null --srcdir=. Configuring MPE Miscellaneous Library with '--disable-option-checking' '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/misc checking gnumake... no checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for x86_64-unknown-linux-ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for dbx... no checking for gdb... no checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sysinfo... yes checking for uname... yes checking for gethostbyname... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/systeminfo.h usability... no checking sys/systeminfo.h presence... no checking for sys/systeminfo.h... no checking for sys/types.h... (cached) yes checking for sighandler_t... no checking for kill... yes checking whether kill needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dbxerr.c config.status: creating mpe_misc_conf.h === configuring in src/callstack (/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/callstack) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' --cache-file=/dev/null --srcdir=. Configuring MPE CallStack Library with '--disable-option-checking' '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/callstack checking gnumake... no checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for x86_64-unknown-linux-ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking whether defines backtrace_symbols_fd() ... yes checking if links with -Wl,--export-dynamic ... yes checking for fdopen... yes checking whether fdopen needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating include/mpe_callstack.h config.status: creating etc/mpe_callstack_ldflags.conf config.status: creating bin/bt2line config.status: creating mpe_callstack_conf.h config.status: executing default-1 commands === configuring in src/logging (/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/logging) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' --cache-file=/dev/null --srcdir=. Configuring MPE Logging Library and Tools with '--disable-option-checking' '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/logging checking gnumake... no checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for x86_64-unknown-linux-ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking for sys/stat.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for header that defines C99 integer types, intXX_t ... checking for inttypes.h... (cached) yes checking whether defines the PRIdXX macros ... yes checking if can be behind system headers ... yes checking size of void *... 8 checking for address-sized integer ... CLOG_int64_t checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gethostname... yes checking whether gethostname needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for srand48... yes checking whether srand48 needs a declaration... no checking for lrand48... yes checking whether lrand48 needs a declaration... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for O_LARGEFILE for open() ... needs _LARGEFILE64_SOURCE checking for O_BINARY for open() ... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_mutex_lock in -lpthread... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating include/clog_inttypes.h config.status: creating include/mpi_null.h config.status: creating include/mpe_log_thread.h config.status: creating etc/mpe_log.conf config.status: creating etc/mpe_nolog.conf config.status: creating etc/mpe_log_postlib.conf config.status: creating mpe_logging_conf.h === configuring in src/wrappers (/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/wrappers) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' --cache-file=/dev/null --srcdir=. Configuring MPE Wrapper Libraries For MPI with '--disable-option-checking' '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/wrappers checking gnumake... no checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for x86_64-unknown-linux-ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for working alloca.h... yes checking for alloca... yes checking for stdarg is correct... yes checking if compiler accepts prototypes ... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for safe PMPI invocations ... no checking for the value of MPI_STATUS_SIZE ... 5 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_f77env.conf config.status: creating etc/mpe_mpilog.conf config.status: creating etc/mpe_mpitrace.conf config.status: creating mpe_wrappers_conf.h === configuring in src/graphics (/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/graphics) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' --cache-file=/dev/null --srcdir=. Configuring MPE X Graphics Library with '--disable-option-checking' '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/graphics checking gnumake... no checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for x86_64-unknown-linux-ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for X... no configure: WARNING: Could not find appropriate X windows libraries. MPE routines that make use of X11 graphics will NOT be built unless you put X windows libraries in your path and reconfigure! === configuring in src/collchk (/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/collchk) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' --cache-file=/dev/null --srcdir=. Configuring MPE Collective and Datatype Checking Library with '--disable-option-checking' '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/collchk checking gnumake... no checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for x86_64-unknown-linux-gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for x86_64-unknown-linux-ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for working alloca.h... yes checking for alloca... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_mpicheck.conf config.status: creating mpe_collchk_conf.h === configuring in src/slog2sdk (/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/slog2sdk) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' --cache-file=/dev/null --srcdir=. checking for current directory name... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpe2/src/slog2sdk Configuring SLOG2SDK with '--disable-option-checking' '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/common/locks -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/src/util/wrappers' 'F77=f77' 'FFLAGS=-O -O2' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include -O2' 'MPI_CC=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77' '--cache-file=/dev/null' '--srcdir=.' checking gnumake... no checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether install works... yes checking if CLASSPATH is set... no, good to go checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for java in user's PATH... not found checking for java in user's PATH... not found configure: WARNING: No Java Virtual Machine can be found anywhere! MPE2: "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/collchk" have been configured configure: ===== done with src/mpe2 configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/include/Makefile config.status: creating src/include/mpich2info.h config.status: creating mpich2-doxygen config.status: creating src/include/mpichtimer.h config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/mpif.h config.status: creating src/binding/f77/setbotf.f config.status: creating src/binding/f77/setbot.c config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/mpi_sizeofs.f90 config.status: creating src/packaging/Makefile config.status: creating src/packaging/pkgconfig/mpich2-ch3.pc config.status: creating src/packaging/pkgconfig/Makefile config.status: creating src/packaging/envmods/mpich2.module config.status: WARNING: 'src/packaging/envmods/mpich2.module.in' seems to ignore the --datarootdir setting config.status: creating src/packaging/envmods/Makefile config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc config.status: creating src/env/mpicc.conf config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx config.status: creating src/env/mpicxx.conf config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77 config.status: creating src/env/mpif77.conf config.status: creating src/env/mpif77.bash config.status: creating src/env/mpif90 config.status: creating src/env/mpif90.conf config.status: creating src/env/mpif90.bash config.status: creating src/env/parkill config.status: creating src/env/Makefile config.status: WARNING: 'src/env/Makefile.in' seems to ignore the --datarootdir setting config.status: creating src/util/createshlib config.status: creating src/mpi/Makefile config.status: creating src/mpi/attr/Makefile config.status: creating src/mpi/coll/Makefile config.status: creating src/mpi/comm/Makefile config.status: creating src/mpi/datatype/Makefile config.status: creating src/mpi/debugger/Makefile config.status: creating src/mpi/errhan/Makefile config.status: creating src/mpi/group/Makefile config.status: creating src/mpi/init/Makefile config.status: creating src/mpi/misc/Makefile config.status: creating src/mpi/pt2pt/Makefile config.status: creating src/mpi/rma/Makefile config.status: creating src/mpi/spawn/Makefile config.status: creating src/mpi/timer/Makefile config.status: creating src/mpi/topo/Makefile config.status: creating src/mpid/Makefile config.status: creating src/mpid/common/Makefile config.status: creating src/mpid/common/datatype/Makefile config.status: creating src/mpid/common/datatype/dataloop/Makefile config.status: creating src/pm/Makefile config.status: creating src/pmi/Makefile config.status: creating src/pmi/simple/Makefile config.status: creating src/nameserv/Makefile config.status: creating src/nameserv/file/Makefile config.status: creating src/nameserv/mpd/Makefile config.status: creating src/nameserv/pmi/Makefile config.status: creating src/nameserv/test/Makefile config.status: creating src/util/Makefile config.status: creating src/util/info/Makefile config.status: creating src/util/instrm/Makefile config.status: creating src/util/thread/Makefile config.status: creating src/util/mem/Makefile config.status: creating src/util/msgs/Makefile config.status: creating src/util/param/Makefile config.status: creating src/util/dbg/Makefile config.status: creating src/util/dbg/getfuncstack config.status: creating src/util/osserv/Makefile config.status: creating src/util/procmap/Makefile config.status: creating src/util/other/Makefile config.status: creating src/include/mpi.h config.status: creating test/Makefile config.status: creating test/util/Makefile config.status: creating test/basic/Makefile config.status: creating test/commands/Makefile config.status: creating test/commands/cmdtests config.status: creating test/mpid/Makefile config.status: creating test/mpid/ch3/Makefile config.status: creating test/util/timer/Makefile config.status: creating examples/Makefile config.status: creating examples/f77/Makefile config.status: creating examples/f90/Makefile config.status: creating examples/cxx/Makefile config.status: creating src/util/logging/Makefile config.status: creating src/util/logging/common/Makefile config.status: creating doc/Makefile config.status: creating doc/mansrc/Makefile config.status: creating doc/mansrc/createhtmlindex config.status: creating doc/refman/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/userguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/design/Makefile config.status: creating doc/smpd/Makefile config.status: creating doc/windev/Makefile config.status: creating src/include/mpichconf.h config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands config.status: executing default-6 commands config.status: executing default-7 commands config.status: executing default-8 commands config.status: executing default-9 commands config.status: executing default-10 commands config.status: executing default-11 commands config.status: executing default-12 commands config.status: executing default-13 commands config.status: executing default-14 commands === configuring in test/mpi (/tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/test/mpi) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich2' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich2' '--htmldir=/usr/pkg/share/doc/mpich2/html' '--with-pm=hydra:gforker' '--with-hydra-bindlib=plpa' '--disable-fc' '--with-openpa-prefix=/usr/pkg' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include' 'LDFLAGS=-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib' 'LIBS=' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include' 'F77=f77' 'FFLAGS=-O' 'FC=f77' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-format -fno-builtin -I/usr/include -I/usr/pkg/include' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for x86_64-unknown-linux-gcc... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc accepts -g... yes checking for /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc option to accept ISO C89... none needed checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking how to run the C preprocessor... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... no checking for major version of MPI... 2 checking for minor version of MPI... 2 checking for x86_64-unknown-linux-ifort... /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpif77 accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking for Fortran 77 name mangling... lower doubleunderscore checking for Fortran libraries needed for getarg... none needed checking whether Fortran has pointer declaration... no checking whether we are using the GNU C++ compiler... yes checking whether /tmp/pkgsrc/parallel/mpi-ch/work/mpich2-1.3.1/bin/mpicxx accepts -g... yes checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/pkg/bin/perl configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating rma/Makefile config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/init/Makefile config.status: creating threads/spawn/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f90/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating include/mpitestconf.h config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands Configuration completed.