=> Bootstrap dependency digest>=20010302: found digest-20111104
WARNING: [license.mk] Every package should define a LICENSE.
=> Checksum SHA1 OK for hmmer-2.3.2.tar.gz
=> Checksum RMD160 OK for hmmer-2.3.2.tar.gz
===> Installing dependencies for hmmer-2.3.2
=> Build dependency nbpatch-[0-9]*: found nbpatch-20100124
=> Build dependency checkperms>=1.1: found checkperms-1.11
===> Overriding tools for hmmer-2.3.2
===> Extracting for hmmer-2.3.2
===> Patching for hmmer-2.3.2
=> Applying pkgsrc patches for hmmer-2.3.2
===> Creating toolchain wrappers for hmmer-2.3.2
===> Configuring for hmmer-2.3.2
=> Modifying GNU configure scripts to avoid --recheck
=> Replacing config-guess with pkgsrc versions
=> Replacing config-sub with pkgsrc versions
=> Replacing install-sh with pkgsrc version
=> Checking for portability problems in extracted files
configure: configuring HMMER for your system.
configure: This is a full source distribution - using full config
checking for i386-apple-darwin12-gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for i386-apple-darwin12-ranlib... no
checking for ranlib... ranlib
checking for ar... /usr/bin/ar
checking build system type... i386-apple-darwin12
checking host system type... i386-apple-darwin12
checking whether your make is GNU make... nope, assuming sysv make.
checking for ntohs... yes
checking for ntohl... yes
checking for htons... yes
checking for htonl... yes
configure: creating ./config.status
config.status: creating src/Makefile
config.status: creating testsuite/Makefile
config.status: creating Makefile
config.status: creating src/config.h
configure: configuring in squid
configure: running /bin/sh './configure' --prefix=/usr/pkg  '--prefix=/usr/pkg' '--build=i386-apple-darwin12' '--host=i386-apple-darwin12' '--mandir=/usr/pkg/man' 'CC=gcc' 'CFLAGS=-pipe -O2' 'CPPFLAGS=-no-cpp-precomp -isystem /usr/include' 'LDFLAGS=-L/usr/pkg/lib' 'build_alias=i386-apple-darwin12' 'host_alias=i386-apple-darwin12' --cache-file=/dev/null --srcdir=.
configure: configuring the SQUID library for your system.
checking for i386-apple-darwin12-gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for i386-apple-darwin12-ranlib... no
checking for ranlib... ranlib
checking for ar... /usr/bin/ar
checking whether your make is GNU make... nope, assuming sysv make.
checking whether byte ordering is bigendian... no
checking for ntohs... yes
checking for ntohl... yes
checking for htons... yes
checking for htonl... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unsigned short... yes
checking size of unsigned short... 2
checking for unsigned int... yes
checking size of unsigned int... 4
checking for unsigned long... yes
checking size of unsigned long... 4
checking for unsigned long long... yes
checking size of unsigned long long... 8
checking for strtoul... yes
checking for strtoull... yes
checking whether fpos_t is an arithmetic datatype... no.
checking for strtoull... (cached) yes
checking for ftello... yes
checking for fseeko... yes
checking for ftello64... no
checking for fseeko64... no
checking for ftell64... no
checking for fseek64... no
checking for stat64... yes
checking for struct stat64... no!
checking for off_t... yes
checking size of off_t... 8
checking for off64_t... no
checking size of off64_t... 0
checking for fpos_t... yes
checking size of fpos_t... 8
configure: creating ./config.status
config.status: creating Makefile
config.status: creating Testsuite/Makefile
config.status: creating squid.h
config.status: creating squidconf.h