=> Bootstrap dependency digest>=20010302: found digest-20111104
WARNING: [license.mk] Every package should define a LICENSE.
===> Building for hmmer-2.3.2
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c afetch_main.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c a2m.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c aligneval.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c alignio.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c clustal.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c cluster.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c dayhoff.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c eps.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c file.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c getopt.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c gki.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c gsi.c
gsi.c: In function 'GSIWriteIndex':
gsi.c:270: warning: comparison is always false due to limited range of data type
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c hsregex.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c iupac.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c msa.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c msf.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c phylip.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c revcomp.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c rk.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c selex.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c seqencode.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c shuffle.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c sqerror.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c sqio.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c squidcore.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c sre_ctype.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c sre_math.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c sre_random.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c sre_string.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c ssi.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c stack.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c stockholm.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c stopwatch.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c translate.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c types.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c vectorops.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c weight.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o afetch afetch_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c alistat_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o alistat alistat_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c compalign_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o compalign compalign_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c compstruct_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o compstruct compstruct_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c revcomp_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o revcomp revcomp_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c seqsplit_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o seqsplit seqsplit_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c seqstat_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o seqstat seqstat_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c sfetch_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o sfetch sfetch_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c shuffle_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o shuffle shuffle_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c sindex_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o sindex sindex_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c sreformat_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o sreformat sreformat_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c translate_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o translate translate_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include  -DHAVE_CONFIG_H -c weight_main.c
gcc -pipe -O2 -L/usr/pkg/lib  -DHAVE_CONFIG_H -o weight weight_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
/usr/bin/ar rcv libsquid.a a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o
a - a2m.o
a - aligneval.o
a - alignio.o
a - clustal.o
a - cluster.o
a - dayhoff.o
a - eps.o
a - file.o
a - getopt.o
a - gki.o
a - gsi.o
a - hsregex.o
a - iupac.o
a - msa.o
a - msf.o
a - phylip.o
a - revcomp.o
a - rk.o
a - selex.o
a - seqencode.o
a - shuffle.o
a - sqerror.o
a - sqio.o
a - squidcore.o
a - sre_ctype.o
a - sre_math.o
a - sre_random.o
a - sre_string.o
a - ssi.o
a - stack.o
a - stockholm.o
a - stopwatch.o
a - translate.o
a - types.o
a - vectorops.o
a - weight.o
ranlib libsquid.a
chmod 644 libsquid.a
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c hmmalign.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c alphabet.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c core_algorithms.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c debug.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c display.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c emit.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c emulation.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c fast_algorithms.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c histogram.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c hmmio.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c mathsupport.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c masks.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c misc.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c modelmakers.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c plan7.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c plan9.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c postprob.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c prior.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c pvm.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c threads.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c tophits.c
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c trace.c
gcc -pipe -O2  -DHAVE_CONFIG_H -L/usr/pkg/lib -L../squid  -o hmmalign hmmalign.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o  -lsquid  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c hmmbuild.c
gcc -pipe -O2  -DHAVE_CONFIG_H -L/usr/pkg/lib -L../squid  -o hmmbuild hmmbuild.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o  -lsquid  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c hmmcalibrate.c
gcc -pipe -O2  -DHAVE_CONFIG_H -L/usr/pkg/lib -L../squid  -o hmmcalibrate hmmcalibrate.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o  -lsquid  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c hmmconvert.c
gcc -pipe -O2  -DHAVE_CONFIG_H -L/usr/pkg/lib -L../squid  -o hmmconvert hmmconvert.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o  -lsquid  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c hmmemit.c
gcc -pipe -O2  -DHAVE_CONFIG_H -L/usr/pkg/lib -L../squid  -o hmmemit hmmemit.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o  -lsquid  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c hmmfetch.c
gcc -pipe -O2  -DHAVE_CONFIG_H -L/usr/pkg/lib -L../squid  -o hmmfetch hmmfetch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o  -lsquid  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c hmmindex.c
gcc -pipe -O2  -DHAVE_CONFIG_H -L/usr/pkg/lib -L../squid  -o hmmindex hmmindex.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o  -lsquid  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c hmmpfam.c
gcc -pipe -O2  -DHAVE_CONFIG_H -L/usr/pkg/lib -L../squid  -o hmmpfam hmmpfam.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o  -lsquid  -lm
gcc -pipe -O2 -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H  -I../squid  -c hmmsearch.c
gcc -pipe -O2  -DHAVE_CONFIG_H -L/usr/pkg/lib -L../squid  -o hmmsearch hmmsearch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o  -lsquid  -lm
/usr/bin/ar rcv libhmmer.a alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o
/usr/bin/ranlib: file: libhmmer.a(pvm.o) has no symbols
/usr/bin/ranlib: file: libhmmer.a(threads.o) has no symbols
a - alphabet.o
a - core_algorithms.o
a - debug.o
a - display.o
a - emit.o
a - emulation.o
a - fast_algorithms.o
a - histogram.o
a - hmmio.o
a - mathsupport.o
a - masks.o
a - misc.o
a - modelmakers.o
a - plan7.o
a - plan9.o
a - postprob.o
a - prior.o
a - pvm.o
a - threads.o
a - tophits.o
a - trace.o
ranlib libhmmer.a
ranlib: file: libhmmer.a(pvm.o) has no symbols
ranlib: file: libhmmer.a(threads.o) has no symbols
chmod 644 libhmmer.a
gcc -pipe -O2  -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H -I../squid -I../src -c alignalign_test.c
gcc -pipe -O2  -L/usr/pkg/lib -DHAVE_CONFIG_H -o alignalign_test -L../squid -L../src alignalign_test.o -lhmmer -lsquid  -lm
gcc -pipe -O2  -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H -I../squid -I../src -c evd_test.c
gcc -pipe -O2  -L/usr/pkg/lib -DHAVE_CONFIG_H -o evd_test -L../squid -L../src evd_test.o -lhmmer -lsquid  -lm
gcc -pipe -O2  -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H -I../squid -I../src -c masks_test.c
gcc -pipe -O2  -L/usr/pkg/lib -DHAVE_CONFIG_H -o masks_test -L../squid -L../src masks_test.o -lhmmer -lsquid  -lm
gcc -pipe -O2  -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H -I../squid -I../src -c parsingviterbi_test.c
gcc -pipe -O2  -L/usr/pkg/lib -DHAVE_CONFIG_H -o parsingviterbi_test -L../squid -L../src parsingviterbi_test.o -lhmmer -lsquid  -lm
gcc -pipe -O2  -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H -I../squid -I../src -c tophits_test.c
gcc -pipe -O2  -L/usr/pkg/lib -DHAVE_CONFIG_H -o tophits_test -L../squid -L../src tophits_test.o -lhmmer -lsquid  -lm
gcc -pipe -O2  -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H -I../squid -I../src -c trace_test.c
gcc -pipe -O2  -L/usr/pkg/lib -DHAVE_CONFIG_H -o trace_test -L../squid -L../src trace_test.o -lhmmer -lsquid  -lm
gcc -pipe -O2  -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H -I../squid -I../src -c viterbi_exercise.c
gcc -pipe -O2  -L/usr/pkg/lib -DHAVE_CONFIG_H -o viterbi_exercise -L../squid -L../src viterbi_exercise.o -lhmmer -lsquid  -lm
gcc -pipe -O2  -no-cpp-precomp -isystem /usr/include -DHAVE_CONFIG_H -I../squid -I../src -c weeviterbi_test.c
gcc -pipe -O2  -L/usr/pkg/lib -DHAVE_CONFIG_H -o weeviterbi_test -L../squid -L../src weeviterbi_test.o -lhmmer -lsquid  -lm
=> Unwrapping files-to-be-installed.