=> Bootstrap dependency digest>=20010302: found digest-20180917 ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. ===> Building for ncbi-blast+-2.8.1 if test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -j16 --jobserver-auth=5,6 all_p; \ else \ cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -j16 --jobserver-auth=5,6 all_r; \ fi gmake[1]: warning: -jN forced in submake: disabling jobserver mode. gmake[1]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/ctools/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/sra/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/gui/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/sample/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/internal/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/ctools/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/gui/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/internal/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/sample/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/sra/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/sra/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT ctools/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT sample/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT gui/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT internal/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT sra/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/sample/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/ctools/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/gui/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/internal/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/sra/Makefile /usr/pkg/bin/gmake -C corelib -w -j16 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=corelib -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=test_mt -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: *** No rule to make target '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=corelib -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:877:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbidiag.hpp:1813:5: note: 'GetProperties' has been explicitly marked deprecated here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:3574:26: warning: 'SetupDiag_AppSpecific' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiapp.hpp:362:5: note: 'SetupDiag_AppSpecific' has been explicitly marked deprecated here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbitime.cpp:32: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbitime.hpp:1890:13: warning: private field 'm_Daylight' is not used [-Wunused-private-field] int m_Daylight; ///< Cached system daylight information ^ gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/guard.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_os_unix.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/metareg.cpp -o metareg.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include ncbicfg.c -o ncbicfg.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/syslog.cpp -o syslog.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/version.cpp -o version.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/request_control.cpp -o request_control.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/expr.cpp:36: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/expr.hpp:369:17: warning: private field 'm_TmpVarCount' is not used [-Wunused-private-field] int m_TmpVarCount; ^ 1 warning generated. 2 warnings generated. inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/expr.cpp -o expr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/resource_info.cpp -o resource_info.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/guard.cpp -o guard.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/request_status.cpp -o request_status.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=test_mt -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/test_mt.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: *** No rule to make target '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib/test' gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -C util -w -j16 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/diff/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/image/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/qparse/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/demo/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/diff/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/qparse/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/test/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/image/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/demo/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT diff/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT image/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT qparse/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/demo/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/image/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/diff/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/qparse/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/test/Makefile gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util TMPL=util -w -j16 --jobserver-auth=9,10 export-headers gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util TMPL=util -w -j16 --jobserver-auth=9,10 all gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp:728:20: warning: unused function 's_ReplaceEnding' [-Wunused-function] static inline bool s_ReplaceEnding(string& word, ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/thread_pool.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/thread_pool_old.hpp:45: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:46: /usr/include/c++/set:942:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/sync_queue.hpp:1045:14: note: in instantiation of template class 'std::__1::multiset, ncbi::SThreadPool_TaskCompare, std::__1::allocator > >' requested here : public multiset ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/sync_queue.hpp:222:22: note: in instantiation of template class 'ncbi::CSyncQueue_multiset, ncbi::SThreadPool_TaskCompare, std::__1::allocator > >' requested here typedef typename Container::value_type TValue; ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool.cpp:340:38: note: in instantiation of template class 'ncbi::CSyncQueue, ncbi::CSyncQueue_multiset, ncbi::SThreadPool_TaskCompare, std::__1::allocator > >, ncbi::CSyncQueue_DefaultTraits>' requested here TQueue m_Queue; ^ /usr/include/c++/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator, ncbi::SThreadPool_TaskCompare>': _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/__config:1249:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' __attribute__((diagnose_if(__VA_ARGS__, "warning"))) ^ ~~~~~~~~~~~ gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/cache_async.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/stream_source.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/table_printer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/miscmath.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/static_set.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/unicode.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/dictionary.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/md5.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/ascii85.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/format_guess.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/logrotate.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/strsearch.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/smalldns.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/itree.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/checksum.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/utf8.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/random_gen.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/random_gen.cpp -o random_gen.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/utf8.cpp -o utf8.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/checksum.cpp -o checksum.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/checksum_cityhash.cpp -o checksum_cityhash.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/itree.cpp -o itree.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/smalldns.cpp -o smalldns.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/strsearch.cpp -o strsearch.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/logrotate.cpp -o logrotate.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/format_guess.cpp -o format_guess.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/ascii85.cpp -o ascii85.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/md5.cpp -o md5.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/file_obsolete.cpp -o file_obsolete.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/unicode.cpp -o unicode.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/dictionary.cpp -o dictionary.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp -o dictionary_util.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sgml_entity.cpp -o sgml_entity.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/static_set.cpp -o static_set.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/transmissionrw.cpp -o transmissionrw.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/miscmath.c -o miscmath.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/mutex_pool.cpp -o mutex_pool.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/line_reader.cpp -o line_reader.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/util_exception.cpp -o util_exception.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/uttp.cpp -o uttp.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/multi_writer.cpp -o multi_writer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/itransaction.cpp -o itransaction.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool.cpp -o thread_pool.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/scheduler.cpp -o scheduler.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/distribution.cpp -o distribution.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/rangelist.cpp -o rangelist.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/util_misc.cpp -o util_misc.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/table_printer.cpp -o table_printer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/stream_source.cpp -o stream_source.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/scheduler.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:46: /usr/include/c++/set:942:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/sync_queue.hpp:1045:14: note: in instantiation of template class 'std::__1::multiset, ncbi::PScheduler_QueueEvent_Compare, std::__1::allocator > >' requested here : public multiset ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/scheduler.cpp:246:21: note: in instantiation of template class 'ncbi::CSyncQueue_multiset, ncbi::PScheduler_QueueEvent_Compare, std::__1::allocator > >' requested here TSchedQueue m_ScheduledTasks; ^ /usr/include/c++/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator, ncbi::PScheduler_QueueEvent_Compare>': _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/__config:1249:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' __attribute__((diagnose_if(__VA_ARGS__, "warning"))) ^ ~~~~~~~~~~~ 1 warning generated. 1 warning generated. blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/cache_async.cpp -o cache_async.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -C regexp -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/regexp TMPL=regexp -w -j16 --jobserver-auth=13,14 mark-as-disabled gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' /usr/pkg/bin/gmake -C xregexp -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/arg_regexp.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include -I/usr/pkg/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include -I/usr/pkg/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include -I/usr/pkg/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -C compress -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -C bzip2 -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j16 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/pkg/bin/gmake -C zlib -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/zlib TMPL=zlib -w -j16 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/pkg/bin/gmake -C api -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api TMPL=compress -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api TMPL=compress -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_zip.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/compress.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/lzo.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress' /usr/pkg/bin/gmake -C diff -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/diff' /usr/pkg/bin/gmake -C image -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/image' /usr/pkg/bin/gmake -C tables -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/tables/test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/tables/test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/tables TMPL=tables -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/tables TMPL=tables -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/tables/raw_scoremat.c. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -C creaders -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/creaders TMPL=creaders -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/creaders TMPL=creaders -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/creaders/alnread.c:2470:14: warning: array subscript is of type 'char' [-Wchar-subscripts] if (!isspace (*str) && !isdigit(*str)) { ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/creaders/alnread.c:2470:33: warning: array subscript is of type 'char' [-Wchar-subscripts] if (!isspace (*str) && !isdigit(*str)) { ^~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:51:44: note: expanded from macro 'isdigit' #define isdigit(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_D)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/creaders/alnread.c:2638:16: warning: array subscript is of type 'char' [-Wchar-subscripts] while (isspace(linestring[offset])) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ 3 warnings generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/creaders/alnread.c. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.a .libcreaders.a.stamp ar cr libcreaders.a alnread.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcreaders.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcreaders.a /bin/ln -f .creaders.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.creaders.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -C sequtil -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil TMPL=sequtil -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil TMPL=sequtil -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:37: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert_imp.hpp:289:30: warning: private field 'm_GapsOK' is not used [-Wunused-private-field] const bool m_GapsOK; ^ 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -C bitset -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/bitset/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/bitset/demo/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/bitset/test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/test' /usr/pkg/bin/gmake -C demo -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset' /usr/pkg/bin/gmake -C qparse -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/qparse' /usr/pkg/bin/gmake -C lmdb -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: *** No rule to make target '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' /usr/pkg/bin/gmake -C lmdbxx -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/lmdbxx/example.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/util/lmdbxx/example.cpp -o example.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O example.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -llmdb -lpthread -lm -lpthread -o lmdbxx_sample strip lmdbxx_sample /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/test' /usr/pkg/bin/gmake -C demo -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/demo' gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -C connect -w -j16 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ext/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/daemons/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ext/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT ext/Makefile test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/daemons/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT daemons/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/ext/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/daemons/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/test/Makefile gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connssl -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connect -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xxconnect -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xconnect -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xthrserv -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connssl -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md_wrap.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_gnutls.c. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/aesni.c -o mbedtls/aesni.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/arc4.c -o mbedtls/arc4.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/asn1parse.c -o mbedtls/asn1parse.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/asn1write.c -o mbedtls/asn1write.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/base64.c -o mbedtls/base64.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/bignum.c -o mbedtls/bignum.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/blowfish.c -o mbedtls/blowfish.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/camellia.c -o mbedtls/camellia.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ccm.c -o mbedtls/ccm.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cipher.c -o mbedtls/cipher.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cipher_wrap.c -o mbedtls/cipher_wrap.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cmac.c -o mbedtls/cmac.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ctr_drbg.c -o mbedtls/ctr_drbg.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/des.c -o mbedtls/des.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/dhm.c -o mbedtls/dhm.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecdh.c -o mbedtls/ecdh.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecdsa.c -o mbedtls/ecdsa.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecjpake.c -o mbedtls/ecjpake.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecp.c -o mbedtls/ecp.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecp_curves.c -o mbedtls/ecp_curves.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/entropy.c -o mbedtls/entropy.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/entropy_poll.c -o mbedtls/entropy_poll.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/error.c -o mbedtls/error.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/gcm.c -o mbedtls/gcm.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/havege.c -o mbedtls/havege.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/hmac_drbg.c -o mbedtls/hmac_drbg.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md.c -o mbedtls/md.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md2.c -o mbedtls/md2.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md4.c -o mbedtls/md4.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c -o mbedtls/mbedtls_md5.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md_wrap.c -o mbedtls/md_wrap.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c -o mbedtls/memory_buffer_alloc.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/w/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:316:37: warning: passing 'int *' to parameter of type '__socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] (void *) &type, &type_len ) != 0 || ^~~~~~~~~ /usr/include/sys/socket.h:626:71: note: passing argument to parameter here int getsockopt(int, int, int, void *__restrict, socklen_t * __restrict); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:326:80: warning: passing 'int *' to parameter of type '__socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] (struct sockaddr *) &client_addr, &n ); ^~ /usr/include/sys/socket.h:620:69: note: passing argument to parameter here int accept(int, struct sockaddr * __restrict, socklen_t * __restrict); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:334:59: warning: passing 'int *' to parameter of type '__socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] (struct sockaddr *) &client_addr, &n ); ^~ /usr/include/sys/socket.h:633:58: note: passing argument to parameter here struct sockaddr * __restrict, socklen_t * __restrict); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:369:59: warning: passing 'int *' to parameter of type '__socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] (struct sockaddr *) &local_addr, &n ) != 0 || ^~ /usr/include/sys/socket.h:625:74: note: passing argument to parameter here int getsockname(int, struct sockaddr * __restrict, socklen_t * __restrict); ^ 4 warnings generated. ork/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/oid.c -o mbedtls/oid.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/padlock.c -o mbedtls/padlock.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pem.c -o mbedtls/pem.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pk.c -o mbedtls/pk.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pk_wrap.c -o mbedtls/pk_wrap.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs12.c -o mbedtls/pkcs12.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs5.c -o mbedtls/pkcs5.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkparse.c -o mbedtls/pkparse.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkwrite.c -o mbedtls/pkwrite.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/platform.c -o mbedtls/platform.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ripemd160.c -o mbedtls/ripemd160.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/rsa.c -o mbedtls/rsa.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha1.c -o mbedtls/sha1.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha256.c -o mbedtls/sha256.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha512.c -o mbedtls/sha512.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/threading.c -o mbedtls/threading.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/timing.c -o mbedtls/timing.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/mbedtls_version.c -o mbedtls/mbedtls_version.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/version_features.c -o mbedtls/version_features.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/xtea.c -o mbedtls/xtea.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/certs.c -o mbedtls/certs.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs11.c -o mbedtls/pkcs11.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509.c -o mbedtls/x509.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_create.c -o mbedtls/x509_create.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crl.c -o mbedtls/x509_crl.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connect -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c:244:21: warning: unused function 'x_NextBit' [-Wunused-function] static unsigned int x_NextBit(TNCBI_Size size) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c:253:21: warning: unused function 'x_PrevBit' [-Wunused-function] static unsigned int x_PrevBit(TNCBI_Size size) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket.c:2786:14: warning: variable 'error' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket.c:2823:13: note: uninitialized use occurs here if (error == SOCK_EWOULDBLOCK || error == SOCK_EAGAIN) { ^~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket.c:2786:14: note: remove the '&&' if its condition is always true (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket.c:2777:18: note: initialize the variable 'error' to silence this warning int error; ^ = 0 2 warnings generated. /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:558:5: warning: array subscript is of type 'char' [-Wchar-subscripts] SKIP_WHITESPACES(string); ^~~~~~~~~~~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES' #define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); } ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:586:5: warning: array subscript is of type 'char' [-Wchar-subscripts] SKIP_WHITESPACES(string); ^~~~~~~~~~~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES' #define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); } ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:593:9: warning: array subscript is of type 'char' [-Wchar-subscripts] SKIP_WHITESPACES(string); ^~~~~~~~~~~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES' #define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); } ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:612:9: warning: array subscript is of type 'char' [-Wchar-subscripts] SKIP_WHITESPACES(string); ^~~~~~~~~~~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES' #define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); } ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:616:9: warning: array subscript is of type 'char' [-Wchar-subscripts] SKIP_WHITESPACES(string); ^~~~~~~~~~~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES' #define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); } ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:618:5: warning: array subscript is of type 'char' [-Wchar-subscripts] SKIP_WHITESPACES(string); ^~~~~~~~~~~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES' #define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); } ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:634:5: warning: array subscript is of type 'char' [-Wchar-subscripts] SKIP_WHITESPACES(string); ^~~~~~~~~~~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES' #define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); } ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:650:9: warning: array subscript is of type 'char' [-Wchar-subscripts] SKIP_WHITESPACES(string); ^~~~~~~~~~~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES' #define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); } ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:654:9: warning: array subscript is of type 'char' [-Wchar-subscripts] SKIP_WHITESPACES(string); ^~~~~~~~~~~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES' #define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); } ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:656:5: warning: array subscript is of type 'char' [-Wchar-subscripts] SKIP_WHITESPACES(string); ^~~~~~~~~~~~~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES' #define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); } ^~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos.c:1264:18: warning: array subscript is of type 'char' [-Wchar-subscripts] if (!isalnum(host[i]) && (host[i] != '.')) { ^~~~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:48:44: note: expanded from macro 'isalnum' #define isalnum(c) ((int)((_ctype_tab_ + 1)[(c)] & (_CTYPE_A|_CTYPE_D))) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos.c:2218:14: warning: array subscript is of type 'char' [-Wchar-subscripts] if (!isdigit(port_str[i])) { ^~~~~~~~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:51:44: note: expanded from macro 'isdigit' #define isdigit(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_D)) ^~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos.c:2457:13: warning: array subscript is of type 'char' [-Wchar-subscripts] if (isspace(service[i])) { ^~~~~~~~~~~~~~~~~~~ /usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace' #define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S)) ^~~~ 3 warnings generated. 10 warnings generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbsmd_stub.c. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c -o parson.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xxconnect -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xconnect -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xthrserv -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp:47:20: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimisc.hpp:1124:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimisc.hpp:1118:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp:52:5: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimisc.hpp:1124:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimisc.hpp:1118:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ 2 warnings generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/server.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/server.cpp -o server.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -C services -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=xconnserv -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=xconnserv -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/util.cpp -o util.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/clparser.cpp -o clparser.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/neticache_client.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -shared -o libncbi_xcache_netcache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC neticache_client.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -lpthread /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -C ext -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/test' /usr/pkg/bin/gmake -C daemons -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/daemons' gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -C cgi -w -j16 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi/test/Makefile gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=cgi -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=fcgi -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=cgi -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/user_agent.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgi.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgictx.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=fcgi -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/fcgi_run.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include -DNCBI_XFCGI_EXPORTS /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -C html -w -j16 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/demo/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/test/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/demo/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/demo/Makefile gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html TMPL=html -w -j16 --jobserver-auth=9,10 export-headers gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html TMPL=html -w -j16 --jobserver-auth=9,10 all gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/pager.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/components.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/page.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/selection.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/html.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/node.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/node.cpp -o node.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/html.cpp -o html.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/page.cpp -o page.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/pager.cpp -o pager.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/selection.cpp -o selection.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/components.cpp -o components.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/test' /usr/pkg/bin/gmake -C demo -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -C build-system -w -j16 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -C helpers -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake -C project_tree_builder -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/pkg/lib -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -C msbuild -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j16 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system' /usr/pkg/bin/gmake -C serial -w -j16 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/soap/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/test/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/soap/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT soap/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/soap/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/test/Makefile gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=serial -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=cserial -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=serial -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objectio.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectio.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectiter.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objectiter.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectiter.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/stdtypes.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypesimpl.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objectinfo.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/stltypes.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/continfo.cpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/ptrinfo.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostr.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/enumerated.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/autoptrinfo.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/typeinfo.cpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/typeref.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objectiter.cpp:35: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectiter.hpp:578:18: warning: private field 'm_VariantIndex' is not used [-Wunused-private-field] TMemberIndex m_VariantIndex; ^ 1 warning generated. 2 warnings generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/classinfob.cpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/member.cpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/classinfo.cpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/aliasinfo.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/variant.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/choiceptr.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/choiceptr.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistr.cpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/iterator.cpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectiter.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostr.cpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostr.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objcopy.cpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objcopy.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostr.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/choice.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostr.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/serial.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/delaybuf.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostr.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/pack_string.cpp:32: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/pack_string.hpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objhook.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/exception.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/rpcbase.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/serial.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/iterator.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/choice.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/variant.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/member.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/item.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/memberid.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/continfo.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/typemap.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/typeref.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objectio.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/hookdata.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objectiter.cpp -o objectiter.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objectio.cpp -o objectio.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/typeref.cpp -o typeref.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/typemap.cpp -o typemap.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/enumerated.cpp -o enumerated.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/continfo.cpp -o continfo.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/stltypes.cpp -o stltypes.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/memberid.cpp -o memberid.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/memberlist.cpp -o memberlist.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/item.cpp -o item.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/classinfob.cpp -o classinfob.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/member.cpp -o member.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/classinfo.cpp -o classinfo.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/variant.cpp -o variant.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/choice.cpp -o choice.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/choiceptr.cpp -o choiceptr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistr.cpp -o objistr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostr.cpp -o objostr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objcopy.cpp -o objcopy.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/iterator.cpp -o iterator.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/serial.cpp -o serial.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/delaybuf.cpp -o delaybuf.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/pack_string.cpp -o pack_string.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/exception.cpp -o exception.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objhook.cpp -o objhook.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objlist.cpp -o objlist.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objstack.cpp -o objstack.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/nIn file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasn.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostrasn.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostr.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasn.cpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistrasn.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasnb.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostrasnb.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostr.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasnb.cpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistrasnb.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrxml.cpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistrxml.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrxml.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostrxml.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostr.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objostrjson.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostrjson.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostr.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/serialobject.cpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/objistrjson.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistrjson.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/rpcbase.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/rpcbase_impl.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. cbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/serializable.cpp -o serializable.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/serialobject.cpp -o serialobject.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/pathhook.cpp -o pathhook.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=cserial -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/asntypes.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -C datatool -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool TMPL=datatool -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/statictype.cpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp:201:7: warning: field 'm_BitNames' will be initialized after base 'ncbi::CBitStringTypeStrings::CParent' (aka 'ncbi::CStdTypeStrings') [-Wreorder] : m_BitNames(bitNames), CParent(type,comments,false) ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumtype.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/datatool.cpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/unitype.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/reftype.cpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/datatool.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/type.cpp -o type.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/value.cpp -o value.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/module.cpp -o module.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/generate.cpp -o generate.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/filecode.cpp -o filecode.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/code.cpp -o code.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/fileutil.cpp -o fileutil.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/alexer.cpp -o alexer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aparser.cpp -o aparser.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/parser.cpp -o parser.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/lexer.cpp -o lexer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/exceptions.cpp -o exceptions.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/comments.cpp -o comments.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool strip datatool /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/test' /usr/pkg/bin/gmake -C soap -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/soap' gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -C db -w -j16 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/db/bdb/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/db/bdb/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /usr/pkg/bin/gmake -C sqlite -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -C bdb -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db' /usr/pkg/bin/gmake -C dbapi -w -j16 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/simple/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/lang_bind/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/simple/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/test/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/lang_bind/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT simple/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi TMPL=dbapi -w -j16 --jobserver-auth=9,10 export-headers gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi TMPL=dbapi -w -j16 --jobserver-auth=9,10 all gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp:85:26: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] ->SetCmd(curCmd->SendDataCmd(item_num, datasize, ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:889:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:261:41: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:540:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:384:45: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:540:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp:88:25: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] m_dataCmd = curCmd->SendDataCmd(item_num, datasize, ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:889:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ 1 warning generated. 1 warning generated. 2 warnings generated. gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/variant.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/variant.cpp -o variant.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -C driver -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/mysql/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/util/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/mysql/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/samples/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT mysql/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT util/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT ctlib/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds95/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT samples/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds100/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds64/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/handle_stack.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/public.cpp -o public.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/types.cpp -o types.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -C util -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/pkg/bin/gmake -C ctlib -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/pkg/bin/gmake -C ftds64 -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' /usr/pkg/bin/gmake -C ftds95 -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' /usr/pkg/bin/gmake -C ftds100 -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /usr/pkg/bin/gmake -C ftds-default -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/pkg/bin/gmake -C mysql -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/pkg/bin/gmake -C odbc -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w -j16 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/pkg/bin/gmake -C samples -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -C simple -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/simple' /usr/pkg/bin/gmake -C cache -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/admintool/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/test/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/admintool/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/admintool/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT admintool/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool/Makefile gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:436:32: warning: 'GetBlobOStream' is deprecated [-Wdeprecated-declarations] ostream& out = cur.GetBlobOStream(1, m_BytesInBuffer); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:595:5: note: 'GetBlobOStream' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:441:32: warning: 'GetBlobOStream' is deprecated [-Wdeprecated-declarations] ostream& out = cur.GetBlobOStream(1, (size_t)total_bytes); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:595:5: note: 'GetBlobOStream' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:1246:29: warning: 'GetBlobOStream' is deprecated [-Wdeprecated-declarations] ostream& out = cur->GetBlobOStream(1, size); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:595:5: note: 'GetBlobOStream' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ 3 warnings generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp -o dbapi_blob_cache.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp -o dbapi_blob_cache_cf.o /bin/rm -f libncbi_xcache_dbapi.a .libncbi_xcache_dbapi.a.stamp /bin/rm -f libncbi_xcache_dbapi-dll.so .libncbi_xcache_dbapi-dll.so.stamp ar cr libncbi_xcache_dbapi.a dbapi_blob_cache.o dbapi_blob_cache_cf.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -shared -o libncbi_xcache_dbapi-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC dbapi_blob_cache.o dbapi_blob_cache_cf.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -ldbapi -ldbapi_driver-dll -lm -lpthread /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi.a /bin/ln -f .ncbi_xcache_dbapi.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi.dep /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi-dll.so /bin/ln -f .ncbi_xcache_dbapi-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi-dll.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/test' /usr/pkg/bin/gmake -C admintool -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -C lang_bind -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -C objects -w -j16 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/Makefile.sources builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16"; export MAKE; \ ( cd $i && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w -j16 --jobserver-auth=14,16" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/bibl[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. io/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock/seqblock.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-b[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. Warning: (810.1) No service name provided for CTrackMgrClient [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me last-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/wogmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... rk/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=14,16 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -C general -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/test/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/unit_test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh general all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general TMPL=general -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general TMPL=general -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/uoconv.cpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/general/uoconv.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/Date.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/Date_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general' 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/uoconv.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general__.cpp -o general__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general___.cpp -o general___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/test' /usr/pkg/bin/gmake -C unit_test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -C biblio -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh biblio all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio TMPL=biblio -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio TMPL=biblio -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/Affil.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/biblio/Affil.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/biblio/Affil_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/citation_base.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/Affil_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio__.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio___.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -C medline -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh medline all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline TMPL=medline -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline TMPL=medline -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/DocRef.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/medline/DocRef.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/medline/DocRef_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/DocRef_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -C pub -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pub all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub TMPL=pub -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub TMPL=pub -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/Pub.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/pub/Pub.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/pub/Pub_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/Pub_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub' 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -C seqcode -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode TMPL=seqcode -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode TMPL=seqcode -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/Seq_code_set.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqcode/Seq_code_set.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqcode/Seq_code_set_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -C seq -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/test/Makefile.in test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/unit_test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/Makefile.sources builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. Platform not defined for NetBSD amd64 -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seq all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock/seqblock.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq TMPL=seq -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq TMPL=seq -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from seqfeat__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from seqres__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqres/seqres__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqres/Byte_graph.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqres/Byte_graph.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqres/Byte_graph_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from seqloc__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from seqalign__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock/seqblock.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq' In file included from seqblock__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqblock/seqblock__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqblock/EMBL_block.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqblock/EMBL_block_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqport_util.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seqport_util.hpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/Seq_data.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/Seq_data_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_tree.cpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_tree.hpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/general/Date.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/general/Date_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/Align_def.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from seqtable__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqtable/seqtable__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqtable/BVector_data.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqtable/BVector_data.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqtable/BVector_data_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from seqalign___.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from seqblock___.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/Align_def_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from seqtable___.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from seqres___.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from seqloc___.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from seqfeat___.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from seqloc__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:10: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/Seq_id.cpp:1676:13: warning: enumeration value 'eFastaContent' not handled in switch [-Wswitch] switch (type) { ^ In file included from seqfeat__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:21: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:1972:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_handle.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_mapper.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seq_id_mapper.hpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seq_loc_mapper_base.hpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seq_align_mapper_base.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqlocinfo.cpp:32: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seqlocinfo.hpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/sofa_map.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/sofa_type.hpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/so_map.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seq_loc_from_string.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:52:9: warning: private field 'm_dummy' is not used [-Wunused-private-field] int m_dummy; ^ 2 warnings generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp:39: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:52:9: warning: private field 'm_dummy' is not used [-Wunused-private-field] int m_dummy; ^ 1 warning generated. 2 warnings generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 2 warnings generated. 1 warning generated. 2 warnings generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/sofa_map.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqalign__.cpp -o seqalign__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqblock__.cpp -o seqblock__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqfeat__.cpp -o seqfeat__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqloc__.cpp -o seqloc__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqres__.cpp -o seqres__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqtable__.cpp -o seqtable__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqalign___.cpp -o seqalign___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqblock___.cpp -o seqblock___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqfeat___.cpp -o seqfeat___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqloc___.cpp -o seqloc___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqres___.cpp -o seqres___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include seqtable___.cpp -o seqtable___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/test' /usr/pkg/bin/gmake -C unit_test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -C seqset -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqset all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset TMPL=seqset -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset TMPL=seqset -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/gb_release_file.cpp:32: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqset/gb_release_file.hpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqset/Seq_entry.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/Bioseq_set.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/iterator.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -C submit -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh submit all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit TMPL=submit -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit TMPL=submit -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/Contact_info.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/submit/Contact_info.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/submit/Contact_info_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/Contact_info_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -C seqedit -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit TMPL=seqedit -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit TMPL=seqedit -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -C seqsplit -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -C id1 -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh id1 all Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1 -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1cli -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1 -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/Entry_complexities.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/id1/Entry_complexities.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/id1/Entry_complexities_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/Entry_complexities_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1' 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1cli -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/id1/id1_client.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/id1/id1_client_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client_.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -C id2 -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh id2 all Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2 -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2cli -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2 -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2__.cpp:26: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] replies = move(ProcessSomeRequests(packet)); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: note: remove std::move call here replies = move(ProcessSomeRequests(packet)); ^~~~~ ~ 2 warnings generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2' 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2cli -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/id2/id2_client.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/id2/id2_client_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client_.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -C entrez2 -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/demo/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/E2Reply.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/entrez2/E2Reply.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/entrez2/E2Reply_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/E2Reply_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client.cpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/entrez2/entrez2_client.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/entrez2/entrez2_client_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -C demo -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -C pubmed -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed TMPL=pubmed -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed TMPL=pubmed -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/Pubmed_entry.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/pubmed/Pubmed_entry.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/pubmed/Pubmed_entry_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed__.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed___.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -C medlars -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh medlars all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars TMPL=medlars -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars TMPL=medlars -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/Medlars_entry.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/medlars/Medlars_entry.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/medlars/Medlars_entry_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -C mla -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh mla all Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mla -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mlacli -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mla -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/Error_val.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mla/Error_val.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mla/Error_val_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/Error_val_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla' 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mlacli -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mla/mla_client.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client_.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -C proj -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh proj all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj TMPL=proj -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj TMPL=proj -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj/Projdesc.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/proj/Projdesc.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/proj/Projdesc_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj/Projdesc_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -C scoremat -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat TMPL=scoremat -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat TMPL=scoremat -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/BlockProperty.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/scoremat/BlockProperty.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/scoremat/BlockProperty_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -C blast -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blast all Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=blast -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=blast -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/names.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blast/names.hpp:45: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blast/NCBI_Blast4_module.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast' 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/names.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blast/blastclient.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blast/blastclient_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -C blastdb -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb TMPL=blastdb -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb TMPL=blastdb -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -C blastxml -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml TMPL=blastxml -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml TMPL=blastxml -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/BlastOutput.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blastxml/BlastOutput.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blastxml/BlastOutput_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -C blastxml2 -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/BlastOutput2.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blastxml2/BlastOutput2.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/blastxml2/BlastOutput2_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -C mmdb -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. Platform not defined for NetBSD amd64 -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD amd64 -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=16,18 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb TMPL=mmdb -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb TMPL=mmdb -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from In file included from mmdb1__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb1/mmdb1__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb1/Atom.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mmdb1/Atom.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mmdb1/Atom_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ mmdb2__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb2/mmdb2__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mmdb2/Alternate_conformation_id.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mmdb2/Alternate_conformation_id_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from mmdb3__.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb3/mmdb3__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb3/Align_stats.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mmdb3/Align_stats.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mmdb3/Align_stats_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from mmdb2___.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from mmdb1___.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from mmdb3___.cpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb1__.cpp. Updating dependency information for mmdb2__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include mmdb1__.cpp -o mmdb1__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include mmdb2__.cpp -o mmdb2__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include mmdb3__.cpp -o mmdb3__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include mmdb1___.cpp -o mmdb1___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include mmdb2___.cpp -o mmdb2___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -C cn3d -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d TMPL=cn3d -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d TMPL=cn3d -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/Cn3d_GL_matrix.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/cn3d/Cn3d_GL_matrix.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/cn3d/Cn3d_GL_matrix_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d___.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -C cdd -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh cdd all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd TMPL=cdd -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd TMPL=cdd -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/Algorithm_type.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/cdd/Algorithm_type.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/cdd/Algorithm_type_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -C ncbimime -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/Biostruc_align.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/ncbimime/Biostruc_align.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/ncbimime/Biostruc_align_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -C test -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -C pcsubstance -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/PC_AtomInt.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/pcsubstance/PC_AtomInt.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/pcsubstance/PC_AtomInt_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -C pcassay -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay TMPL=pcassay -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay TMPL=pcassay -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/PC_AnnotatedXRef.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/pcassay/PC_AnnotatedXRef.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/pcassay/PC_AnnotatedXRef_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -C gbseq -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq TMPL=gbseq -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq TMPL=gbseq -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/GBAltSeqData.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/gbseq/GBAltSeqData.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/gbseq/GBAltSeqData_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -C insdseq -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq TMPL=insdseq -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq TMPL=insdseq -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/INSDAltSeqData.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/insdseq/INSDAltSeqData.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/insdseq/INSDAltSeqData_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -C tinyseq -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/TSeq.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/tinyseq/TSeq.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/tinyseq/TSeq_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/TSeq_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -C biotree -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh biotree all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree TMPL=biotree -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree TMPL=biotree -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/BioTreeContainer.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/biotree/BioTreeContainer.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/biotree/BioTreeContainer_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -C entrezgene -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/entrezgene/Entrezgene.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/entrezgene/Entrezgene_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -C omssa -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh omssa all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa TMPL=omssa -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa TMPL=omssa -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/MSBioseq.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/omssa/MSBioseq.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/omssa/MSBioseq_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/MSBioseq_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -C remap -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh remap all Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remap -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remapcli -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remap -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/RMReply.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/remap/RMReply.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/remap/RMReply_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/RMReply_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap' 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remapcli -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/remap/remap_client.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/remap/remap_client_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -C seqtest -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest TMPL=seqtest -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest TMPL=seqtest -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/SeqTestResults.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqtest/SeqTestResults.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqtest/SeqTestResults_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -C taxon1 -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/Taxon1_data.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/utils.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/ctreecont.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/ctreecont.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1.cpp:35: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistrasn.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/ctreecont.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/local_taxon.cpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/local_taxon.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -C taxon3 -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3.cpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3__.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3___.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -C gbproj -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj TMPL=gbproj -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj TMPL=gbproj -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' 2 warnings generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -C trackmgr -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackset_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/blast_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:33: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -C valerr -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh valerr all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr TMPL=valerr -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr TMPL=valerr -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/ValidErrItem.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/valerr/ValidErrItem.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqset/Seq_entry.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -C valid -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh valid all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid TMPL=valid -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid TMPL=valid -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid/Comment_rule_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid/Comment_rule.cpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/iterator.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid' 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -C access -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh access all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access TMPL=access -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access TMPL=access -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access/access__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access/Link_set.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/access/Link_set.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/access/Link_set_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access/access___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access/Link_set_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access/access__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access/access__.cpp -o access__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -C docsum -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh docsum all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum TMPL=docsum -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum TMPL=docsum -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/Assay.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/docsum/Assay.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/docsum/Assay_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/Assay_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -C featdef -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh featdef all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef TMPL=featdef -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef TMPL=featdef -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/FeatDef.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/featdef/FeatDef.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/featdef/FeatDef_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/FeatDef_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -C genomecoll -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/make_asn.lock/usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' . Acquired /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 10006 (make_asn) Platform not defined for NetBSD amd64 -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j16 --jobserver-auth=13,14 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=13,14 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/GCClientRequest.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/GCClientRequest.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/GCClientRequest_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:28: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/cached_assembly.hpp:31: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/GC_Assembly.hpp:45: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/GC_Assembly_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: warning: adding 'std::__1::basic_string, std::__1::allocator >::size_type' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int] NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:551:45: note: expanded from macro 'NCBI_THROW' message)); \ ^~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:540:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:527:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:523:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:531:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^~~~~~~~~~~~~ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: note: use array indexing to silence this warning NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ^ & [ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:551:45: note: expanded from macro 'NCBI_THROW' message)); \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:540:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:527:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:523:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:531:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/GCClientRequest_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:63:5: warning: 'GetType' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1189:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT' NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1124:25: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON' virtual const char* GetType(void) const {return #exception_class;} \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:849:25: note: overridden virtual function is here virtual const char* GetType(void) const; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:63:5: warning: 'Throw' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1189:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT' NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1132:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON' NCBI_EXCEPTION_DEFAULT_THROW(exception_class) \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1110:32: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_THROW' NCBI_NORETURN virtual void Throw(void) const \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:785:32: note: overridden virtual function is here NCBI_NORETURN virtual void Throw(void) const; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:63:5: warning: 'x_Clone' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1189:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT' NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1135:31: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON' virtual const CException* x_Clone(void) const \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:927:31: note: overridden virtual function is here virtual const CException* x_Clone(void) const; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:42: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:63:5: warning: 'GetType' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1189:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT' NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1124:25: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON' virtual const char* GetType(void) const {return #exception_class;} \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:849:25: note: overridden virtual function is here virtual const char* GetType(void) const; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:42: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:63:5: warning: 'Throw' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1189:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT' NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1132:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON' NCBI_EXCEPTION_DEFAULT_THROW(exception_class) \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1110:32: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_THROW' NCBI_NORETURN virtual void Throw(void) const \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:785:32: note: overridden virtual function is here NCBI_NORETURN virtual void Throw(void) const; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:42: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:63:5: warning: 'x_Clone' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1189:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT' NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1135:31: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON' virtual const CException* x_Clone(void) const \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:927:31: note: overridden virtual function is here virtual const CException* x_Clone(void) const; ^ 2 warnings generated. 4 warnings generated. 4 warnings generated. 1 warning generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -C gc_cli -w -j16 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -w -j16 --jobserver-auth=13,14 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objostr.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:41: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:63:5: warning: 'GetType' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1189:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT' NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1124:25: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON' virtual const char* GetType(void) const {return #exception_class;} \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:849:25: note: overridden virtual function is here virtual const char* GetType(void) const; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:41: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:63:5: warning: 'Throw' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1189:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT' NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1132:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON' NCBI_EXCEPTION_DEFAULT_THROW(exception_class) \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1110:32: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_THROW' NCBI_NORETURN virtual void Throw(void) const \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:785:32: note: overridden virtual function is here NCBI_NORETURN virtual void Throw(void) const; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:41: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:63:5: warning: 'x_Clone' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1189:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT' NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:1135:31: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON' virtual const CException* x_Clone(void) const \ ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:927:31: note: overridden virtual function is here virtual const CException* x_Clone(void) const; ^ 4 warnings generated. gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O gc_cli.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lz -lm -lpthread -o gc_cli strip gc_cli /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -C homologene -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh homologene all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene TMPL=homologene -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene TMPL=homologene -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/HG_Alignment.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/homologene/HG_Alignment.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/homologene/HG_Alignment_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -C mim -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh mim all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim TMPL=mim -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim TMPL=mim -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim/Mim_allelic_variant.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mim/Mim_allelic_variant.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/mim/Mim_allelic_variant_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -C objprt -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh objprt all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt TMPL=objprt -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt TMPL=objprt -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/PrintForm.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/objprt/PrintForm.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/objprt/PrintForm_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/PrintForm_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -C variation -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh variation all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation TMPL=variation -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation TMPL=variation -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation/VariantPlacement.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/variation/VariantPlacement.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/variation/VariantPlacement_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ 1 warning generated. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation/VariantPlacement_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation' /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ \ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation' 1 warning generated. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -C macro -w -j16 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh macro all Platform not defined for NetBSD amd64 -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro TMPL=macro -w -j16 --jobserver-auth=11,12 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro TMPL=macro -w -j16 --jobserver-auth=11,12 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro___.cpp:2: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action_.cpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialimpl.hpp:39: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objistr.hpp:42: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objhook.hpp:37: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/objectinfo.hpp:40: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:46: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/bm.h:49: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/util/bitset/encoding.h:461:24: warning: assigning field to itself [-Wself-assign-field] used_bits_ ^= used_bits_; ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:61:24: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:1972:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:74:25: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:1972:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:76:25: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:1972:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:88:24: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:1972:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129: /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:99:21: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:1972:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:972:40: note: expanded from macro 'NCBI_DEPRECATED' #define NCBI_DEPRECATED __attribute__((__deprecated__)) ^ /usr/pkg/bin/gmake -w -j16 --jobserver-auth=11,12 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro' 1 warning generated. LLVM ERROR: out of memory Stack dump: 0. Program arguments: /usr/bin/clang -cc1 -triple x86_64--netbsd -emit-obj -disable-free -main-file-name macro__.cpp -mrelocation-model pic -pic-level 2 -mthread-model posix -masm-verbose -mconstructor-aliases -munwind-tables -target-cpu x86-64 -target-feature +sse4.2 -dwarf-column-info -debugger-tuning=gdb -target-linker-version 1 -momit-leaf-frame-pointer -coverage-notes-file /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro/macro__.gcno -resource-dir /usr/lib/clang/7.0.0 -I /data/scratch/biology/ncbi-blast+/work/.buildlink/include -D NDEBUG -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _MT -D _REENTRANT -D _THREAD_SAFE -D __RUNETYPE_INTERNAL -I /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include -internal-isystem /usr/include/c++/ -O2 -Wall -Wno-format-y2k -Wno-deprecated-register -std=gnu++11 -fdeprecated-macro -fdebug-compilation-dir /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro -ferror-limit 19 -fmessage-length 0 -pthread -stack-protector 1 -fobjc-runtime=gnustep -fcxx-exceptions -fexceptions -fdiagnostics-show-option -vectorize-loops -vectorize-slp -o macro__.o -x c++ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp 1. parser at end of file 2. Per-module optimization passes 3. Running pass 'CallGraph Pass Manager' on module '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp'. 4. Running pass 'SROA' on function '@__cxx_global_var_init.231' clang: Error opening elf file: Resource exhaustion 0x5f1145bd <_ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEE6insertIPKcEENS_9enable_ifIXaasr21__is_forward_iteratorIT_EE5valuesr38__libcpp_string_gets_noexcept_iteratorISA_EE5valueENS_11__wrap_iterIPcEEE4typeENSB_IS8_EESA_SA_+0x10a0d> at /usr/bin/clang 0x5f112800 <_ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEE6insertIPKcEENS_9enable_ifIXaasr21__is_forward_iteratorIT_EE5valuesr38__libcpp_string_gets_noexcept_iteratorISA_EE5valueENS_11__wrap_iterIPcEEE4typeENSB_IS8_EESA_SA_+0xec50> at /usr/bin/clang clang: error: unable to execute command: Abort trap (core dumped) clang: error: clang frontend command failed due to signal (use -v to see invocation) clang version 7.0.0 (trunk r337282) Target: x86_64--netbsd Thread model: posix InstalledDir: /usr/bin clang: note: diagnostic msg: PLEASE submit a bug report to http://llvm.org/bugs/ and include the crash backtrace, preprocessed source, and associated run script. clang: note: diagnostic msg: ******************** PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT: Preprocessed source(s) and associated run script(s) are located at: clang: note: diagnostic msg: /var/tmp/macro__-2c2152.cpp clang: note: diagnostic msg: /var/tmp/macro__-2c2152.sh clang: note: diagnostic msg: ******************** gmake[4]: *** [/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.rules:88: macro__.o] Error 254 gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro___.cpp. Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp. /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' FAILED: src/objects/macro/Makefile.macro.lib gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/rm -f libmacro.a .macro.dep .libmacro.a.stamp /bin/rm -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmacro.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.macro.dep \ /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmacro-static.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.macro-static.dep gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[3]: *** [/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_l:305: all.nonusr] Error 2 gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[2]: *** [/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[1]: *** [/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[1]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake: *** [Makefile:24: all] Error 2 *** Error code 2 Stop. make[1]: stopped in /data/pkgsrc/biology/ncbi-blast+ *** Error code 1 Stop. make: stopped in /data/pkgsrc/biology/ncbi-blast+