=> Bootstrap dependency digest>=20010302: found digest-20180917 ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. ===> Building for cgal-3.9nb36 Scanning dependencies of target CGAL [ 4%] Building CXX object src/CGAL/CMakeFiles/CGAL.dir/all_files.cpp.o In file included from /data/scratch/math/cgal/work/CGAL-3.9/src/CGAL/all_files.cpp:1: In file included from /data/scratch/math/cgal/work/CGAL-3.9/src/CGAL/Bbox_2_intersections.cpp:25: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Simple_cartesian.h:27: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Cartesian/Cartesian_base.h:28: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/basic_classes.h:30: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Bbox_2.h:30: /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/array.h:81:31: warning: variadic templates are a C++11 extension [-Wc++11-extensions] template< typename T, typename... Args > ^ In file included from /data/scratch/math/cgal/work/CGAL-3.9/src/CGAL/all_files.cpp:12: In file included from /data/scratch/math/cgal/work/CGAL-3.9/src/CGAL/JAMA_numeric_solver.cpp:21: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Polynomial/internal/numeric_solvers_support.h:23: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Polynomial/basic.h:50: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Gmpq.h:25: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Gmpz.h:33: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Gmp_coercion_traits.h:32: /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/GMP/Gmpfr_type.h:887:9: warning: 'mpfr_root' is deprecated [-Wdeprecated-declarations] mpfr_root(result.fr(),fr(),k,_gmp_rnd(r)); ^ /data/scratch/math/cgal/work/.buildlink/include/mpfr.h:691:1: note: 'mpfr_root' has been explicitly marked deprecated here MPFR_DEPRECATED ^ /data/scratch/math/cgal/work/.buildlink/include/mpfr.h:326:42: note: expanded from macro 'MPFR_DEPRECATED' # define MPFR_DEPRECATED __attribute__ ((deprecated)) ^ In file included from /data/scratch/math/cgal/work/CGAL-3.9/src/CGAL/all_files.cpp:12: In file included from /data/scratch/math/cgal/work/CGAL-3.9/src/CGAL/JAMA_numeric_solver.cpp:21: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Polynomial/internal/numeric_solvers_support.h:23: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Polynomial/basic.h:50: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Gmpq.h:25: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Gmpz.h:33: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Gmp_coercion_traits.h:32: /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/GMP/Gmpfr_type.h:897:9: warning: 'mpfr_root' is deprecated [-Wdeprecated-declarations] mpfr_root(result.fr(),fr(),k,_gmp_rnd(r)); ^ /data/scratch/math/cgal/work/.buildlink/include/mpfr.h:691:1: note: 'mpfr_root' has been explicitly marked deprecated here MPFR_DEPRECATED ^ /data/scratch/math/cgal/work/.buildlink/include/mpfr.h:326:42: note: expanded from macro 'MPFR_DEPRECATED' # define MPFR_DEPRECATED __attribute__ ((deprecated)) ^ In file included from /data/scratch/math/cgal/work/CGAL-3.9/src/CGAL/all_files.cpp:14: In file included from /data/scratch/math/cgal/work/CGAL-3.9/src/CGAL/MP_Float.cpp:22: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/MP_Float.h:29: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Sqrt_extension.h:66: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Sqrt_extension/convert_to_bfi.h:27: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/convert_to_bfi.h:27: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Arithmetic_kernel.h:35: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/CORE_arithmetic_kernel.h:40: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/CORE_BigFloat.h:28: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/CORE_coercion_traits.h:33: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/CORE/CORE.h:39: /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/CORE/Timer.h:43:9: warning: '_CORE_TIMER_H_' is used as a header guard here, followed by #define of a different macro [-Wheader-guard] #ifndef _CORE_TIMER_H_ ^~~~~~~~~~~~~~ /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/CORE/Timer.h:44:9: note: '_CORE_IIMER_H_' is defined here; did you mean '_CORE_TIMER_H_'? #define _CORE_IIMER_H_ ^~~~~~~~~~~~~~ _CORE_TIMER_H_ In file included from /data/scratch/math/cgal/work/CGAL-3.9/src/CGAL/all_files.cpp:16: In file included from /data/scratch/math/cgal/work/CGAL-3.9/src/CGAL/Random.cpp:24: In file included from /data/scratch/math/cgal/work/CGAL-3.9/include/CGAL/Random.h:31: In file included from /data/scratch/math/cgal/work/.buildlink/include/boost/random/linear_congruential.hpp:30: In file included from /data/scratch/math/cgal/work/.buildlink/include/boost/random/detail/const_mod.hpp:23: In file included from /data/scratch/math/cgal/work/.buildlink/include/boost/random/detail/large_arithmetic.hpp:19: In file included from /data/scratch/math/cgal/work/.buildlink/include/boost/random/detail/integer_log2.hpp:19: /data/scratch/math/cgal/work/.buildlink/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED(""); ^ /data/scratch/math/cgal/work/.buildlink/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /data/scratch/math/cgal/work/.buildlink/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :111:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ 5 warnings generated. [ 8%] Linking CXX shared library ../../lib/libCGAL.so CMakeFiles/CGAL.dir/all_files.cpp.o: In function `CGAL::operator>>(std::__1::basic_istream >&, CGAL::File_header_OFF&)': all_files.cpp:(.text+0x1947): undefined reference to `std::__1::basic_istream >::operator>>(std::__1::basic_istream >& (*)(std::__1::basic_istream >&))' CMakeFiles/CGAL.dir/all_files.cpp.o: In function `CGAL::operator>>(std::__1::basic_istream >&, CGAL::File_header_extended_OFF&)': all_files.cpp:(.text+0x2557): undefined reference to `std::__1::basic_istream >::operator>>(std::__1::basic_istream >& (*)(std::__1::basic_istream >&))' /usr/bin/ld: ../../lib/libCGAL.so.8.0.0: hidden symbol `_ZNSt3__113basic_istreamIcNS_11char_traitsIcEEErsEPFRS3_S4_E' isn't defined /usr/bin/ld: final link failed: Bad value clang: error: linker command failed with exit code 1 (use -v to see invocation) --- lib/libCGAL.so.8.0.0 --- *** [lib/libCGAL.so.8.0.0] Error code 1 make[2]: stopped in /data/scratch/math/cgal/work/CGAL-3.9 1 error make[2]: stopped in /data/scratch/math/cgal/work/CGAL-3.9 --- src/CGAL/CMakeFiles/CGAL.dir/all --- *** [src/CGAL/CMakeFiles/CGAL.dir/all] Error code 2 make[1]: stopped in /data/scratch/math/cgal/work/CGAL-3.9 1 error make[1]: stopped in /data/scratch/math/cgal/work/CGAL-3.9 *** [all] Error code 2 make: stopped in /data/scratch/math/cgal/work/CGAL-3.9 1 error make: stopped in /data/scratch/math/cgal/work/CGAL-3.9 *** Error code 2 Stop. make[1]: stopped in /data/pkgsrc/math/cgal *** Error code 1 Stop. make: stopped in /data/pkgsrc/math/cgal