=> Bootstrap dependency digest>=20010302: found digest-20160304
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
===> Building for ncbi-blast+-2.7.1nb1
if test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.flat; then \
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -f Makefile.flat; \
elif test -s ""; then \
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -j --jobserver-fds=5,6 all_p; \
else \
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -j --jobserver-fds=5,6 all_r; \
fi
gmake[1]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/ctools/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sra/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/gui/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sample/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/internal/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/gui/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sra/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sra/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sample/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/ctools/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/internal/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT gui/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT sra/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT sample/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT internal/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ctools/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sra/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/internal/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sample/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/gui/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/ctools/Makefile
/usr/pkg/bin/gmake -C corelib -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/test/Makefile
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=corelib -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=test_mt -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: *** No rule to make target '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
NOTE: skipping project "test_boost" due to unmet requirements
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=corelib -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:854:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations]
value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbidiag.hpp:1810:5: note: 'GetProperties' has been explicitly marked deprecated here
NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:3244:26: warning: 'SetupDiag_AppSpecific' is deprecated [-Wdeprecated-declarations]
app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:362:5: note: 'SetupDiag_AppSpecific' has been explicitly marked deprecated here
NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbitime.cpp:32:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbitime.hpp:1880:13: warning: private field 'm_Daylight' is not used [-Wunused-private-field]
int m_Daylight; ///< Cached system daylight information
^
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_message.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/guard.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_cookies.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_url.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbierror.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_status.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_toolkit.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/perf_log.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_autoinit.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/interprocess_lock.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/resource_info.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_strings.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_ctx.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/version.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_control.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/expr.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/syslog.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/stream_utils.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/rwstreambuf.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager_store.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/obj_store.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbitime.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbithr.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbistre.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbistr.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbireg.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiobj.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbimtx.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbimempool.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbifile.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiexpt.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiexec.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbienv.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidll.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag_p.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidbg.cpp.
Updating dependency information for ncbicfg.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiatomic.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiargs.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiapp.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_system.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_stack.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_signal.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_safe_static.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_process.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_param.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_config.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/metareg.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/env_reg.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ddumpable.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/blob_storage.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_os_unix.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/metareg.cpp -o metareg.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/syslog.cpp -o syslog.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/version.cpp -o version.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_control.cpp -o request_control.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/expr.cpp -o expr.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blIn file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/expr.cpp:36:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/expr.hpp:369:17: warning: private field 'm_TmpVarCount' is not used [-Wunused-private-field]
int m_TmpVarCount;
^
1 warning generated.
1 warning generated.
2 warnings generated.
ast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/resource_info.cpp -o resource_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/perf_log.cpp -o perf_log.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/guard.cpp -o guard.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_status.cpp -o request_status.o
/bin/rm -f libxncbi.a .libxncbi.a.stamp
ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxncbi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxncbi.a
/bin/ln -f .xncbi.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xncbi.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=test_mt -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/test_mt.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o
/bin/rm -f libtest_mt.a .libtest_mt.a.stamp
ar cr libtest_mt.a test_mt.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtest_mt.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtest_mt.a
/bin/ln -f .test_mt.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.test_mt.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: *** No rule to make target '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
NOTE: skipping project "test_boost" due to unmet requirements
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/test'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -C util -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/diff/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/image/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/qparse/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdb/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdbxx/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/demo/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/image/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/qparse/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdb/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdb/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/test/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdbxx/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdbxx/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/diff/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/demo/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT image/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lmdb/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT qparse/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lmdbxx/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT diff/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdb/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/diff/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/image/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/qparse/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdbxx/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/demo/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util TMPL=util -w -j --jobserver-fds=5,6 export-headers
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util'
gmake[3]: Nothing to be done for 'export-headers'.
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util'
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util'
gmake[3]: Nothing to be done for 'export-headers'.
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util TMPL=util -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp:728:20: warning: unused function 's_ReplaceEnding' [-Wunused-function]
static inline bool s_ReplaceEnding(string& word,
^
1 warning generated.
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/retry_ctx.cpp.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/random_gen.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/random_gen.cpp -o random_gen.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/utf8.cpp -o utf8.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/checksum.cpp -o checksum.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bytesrc.cpp -o bytesrc.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/strbuffer.cpp -o strbuffer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/itree.cpp -o itree.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/smalldns.cpp -o smalldns.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/strsearch.cpp -o strsearch.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/logrotate.cpp -o logrotate.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/format_guess.cpp -o format_guess.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/ascii85.cpp -o ascii85.o
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ar cr libxutil.a random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o
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/usr/pkg/bin/gmake -C xregexp -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/arg_regexp.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/mask_regexp.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include -I/usr/pkg/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include -I/usr/pkg/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include -I/usr/pkg/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o
/bin/rm -f libxregexp.a .libxregexp.a.stamp
ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxregexp.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxregexp.a
/bin/ln -f .xregexp.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xregexp.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o
/bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp
ar cr libxregexp_template_tester.a regexp_template_tester.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxregexp_template_tester.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a
/bin/ln -f .xregexp_template_tester.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -C compress -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress'
/usr/pkg/bin/gmake -C bzip2 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
NOTE: Skipping project bzip2 due to unmet requirements:
LocalBZ2
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j --jobserver-fds=5,6 mark-as-disabled
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
/usr/pkg/bin/gmake -C zlib -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib'
NOTE: Skipping project zlib due to unmet requirements:
LocalZ
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/zlib TMPL=zlib -w -j --jobserver-fds=5,6 mark-as-disabled
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib'
/usr/pkg/bin/gmake -C api -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api TMPL=compress -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api TMPL=compress -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_zip.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/reader_zlib.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/lzo.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream_util.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/tar.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/zlib.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/bzip2.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/streambuf.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/compress.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o
/bin/rm -f libxcompress.a .libxcompress.a.stamp
ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxcompress.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcompress.a
/bin/ln -f .xcompress.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcompress.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress'
/usr/pkg/bin/gmake -C diff -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/diff'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/diff'
/usr/pkg/bin/gmake -C image -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/image'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/image'
/usr/pkg/bin/gmake -C tables -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables TMPL=tables -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables TMPL=tables -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables/raw_scoremat.c.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o
/bin/rm -f libtables.a .libtables.a.stamp
ar cr libtables.a raw_scoremat.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtables.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtables.a
/bin/ln -f .tables.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.tables.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables'
/usr/pkg/bin/gmake -C creaders -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders TMPL=creaders -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders TMPL=creaders -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c:2470:14: warning: array subscript is of type 'char' [-Wchar-subscripts]
if (!isspace (*str) && !isdigit(*str)) {
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c:2470:33: warning: array subscript is of type 'char' [-Wchar-subscripts]
if (!isspace (*str) && !isdigit(*str)) {
^~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:51:44: note: expanded from macro 'isdigit'
#define isdigit(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_D))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c:2638:16: warning: array subscript is of type 'char' [-Wchar-subscripts]
while (isspace(linestring[offset])) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
3 warnings generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c -o alnread.o
/bin/rm -f libcreaders.a .libcreaders.a.stamp
ar cr libcreaders.a alnread.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libcreaders.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcreaders.a
/bin/ln -f .creaders.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.creaders.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders'
/usr/pkg/bin/gmake -C sequtil -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil TMPL=sequtil -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil TMPL=sequtil -w -j --jobserver-fds=5,6 all
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:37:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert_imp.hpp:289:30: warning: private field 'm_GapsOK' is not used [-Wunused-private-field]
const bool m_GapsOK;
^
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_tables.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_manip.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_shared.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o
/bin/rm -f libsequtil.a .libsequtil.a.stamp
ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libsequtil.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libsequtil.a
/bin/ln -f .sequtil.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.sequtil.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil'
/usr/pkg/bin/gmake -C bitset -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/demo/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/demo/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/test'
/usr/pkg/bin/gmake -C demo -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/demo'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/demo'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset'
/usr/pkg/bin/gmake -C qparse -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/qparse'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/qparse'
/usr/pkg/bin/gmake -C lmdb -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdb'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdb'
/usr/pkg/bin/gmake -C lmdbxx -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdbxx'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/test'
/usr/pkg/bin/gmake -C demo -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/demo'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/demo'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util'
/usr/pkg/bin/gmake -C connect -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ext/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/daemons/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/daemons/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/test/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ext/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT daemons/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/daemons/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ext/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/ext/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connssl -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connect -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xxconnect -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xconnect -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xthrserv -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connssl -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_gnutls.c:307:5: warning: 'gnutls_connection_end_t' is deprecated [-Wdeprecated-declarations]
gnutls_connection_end_t end = (side == eSOCK_Client
^
/data/scratch/biology/ncbi-blast+/work/.buildlink/include/gnutls/compat.h:51:46: note: 'gnutls_connection_end_t' has been explicitly marked deprecated here
typedef unsigned int gnutls_connection_end_t _GNUTLS_GCC_ATTR_DEPRECATED;
^
/data/scratch/biology/ncbi-blast+/work/.buildlink/include/gnutls/compat.h:40:53: note: expanded from macro '_GNUTLS_GCC_ATTR_DEPRECATED'
#define _GNUTLS_GCC_ATTR_DEPRECATED __attribute__ ((__deprecated__))
^
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/bin/mkdir -p mbedtls
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ticket.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_srv.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cookie.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_tls.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/debug.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cache.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509write_crt.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_crt.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_crl.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_csr.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cli.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509write_csr.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_create.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs11.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/certs.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/version_features.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/xtea.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/mbedtls_version.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/timing.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/threading.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha256.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha512.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha1.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/rsa.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ripemd160.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/platform.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkwrite.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkparse.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs5.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs12.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pk_wrap.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pk.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pem.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/padlock.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/oid.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md_wrap.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md4.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md2.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/hmac_drbg.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/havege.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/gcm.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/error.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/entropy_poll.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/entropy.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecp_curves.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecp.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecjpake.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecdsa.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecdh.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/dhm.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/des.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ctr_drbg.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cmac.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cipher_wrap.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cipher.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ccm.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/camellia.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/blowfish.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/bignum.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/base64.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/asn1write.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/asn1parse.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/arc4.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/aesni.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/aes.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_tls.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_mbedtls.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_gnutls.c.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/aesni.c -o mbedtls/aesni.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md_wrap.c -o mbedtls/md_wrap.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c -o mbedtls/memory_buffer_alloc.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/oid.c -o mbedtls/oid.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:316:37: warning: passing 'int *' to parameter of type '__socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign]
(void *) &type, &type_len ) != 0 ||
^~~~~~~~~
/usr/include/sys/socket.h:655:71: note: passing argument to parameter here
int getsockopt(int, int, int, void *__restrict, socklen_t * __restrict);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:326:80: warning: passing 'int *' to parameter of type '__socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign]
(struct sockaddr *) &client_addr, &n );
^~
/usr/include/sys/socket.h:649:69: note: passing argument to parameter here
int accept(int, struct sockaddr * __restrict, socklen_t * __restrict);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:334:59: warning: passing 'int *' to parameter of type '__socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign]
(struct sockaddr *) &client_addr, &n );
^~
/usr/include/sys/socket.h:661:58: note: passing argument to parameter here
struct sockaddr * __restrict, socklen_t * __restrict);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:369:59: warning: passing 'int *' to parameter of type '__socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign]
(struct sockaddr *) &local_addr, &n ) != 0 ||
^~
/usr/include/sys/socket.h:654:74: note: passing argument to parameter here
int getsockname(int, struct sockaddr * __restrict, socklen_t * __restrict);
^
4 warnings generated.
-fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/padlock.c -o mbedtls/padlock.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pem.c -o mbedtls/pem.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pk.c -o mbedtls/pk.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pk_wrap.c -o mbedtls/pk_wrap.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs12.c -o mbedtls/pkcs12.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs5.c -o mbedtls/pkcs5.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkparse.c -o mbedtls/pkparse.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkwrite.c -o mbedtls/pkwrite.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/platform.c -o mbedtls/platform.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ripemd160.c -o mbedtls/ripemd160.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/rsa.c -o mbedtls/rsa.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha1.c -o mbedtls/sha1.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha256.c -o mbedtls/sha256.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha512.c -o mbedtls/sha512.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/threading.c -o mbedtls/threading.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/timing.c -o mbedtls/timing.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/mbedtls_version.c -o mbedtls/mbedtls_version.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/version_features.c -o mbedtls/version_features.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/xtea.c -o mbedtls/xtea.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/certs.c -o mbedtls/certs.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs11.c -o mbedtls/pkcs11.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509.c -o mbedtls/x509.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_create.c -o mbedtls/x509_create.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_crl.c -o mbedtls/x509_crl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o
/bin/rm -f libconnssl.a .libconnssl.a.stamp
ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libconnssl.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libconnssl.a
/bin/ln -f .connssl.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.connssl.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connect -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c:197:15: warning: left side of operator converted from negative value to unsigned: -16 to 18446744073709551600
#if HEAP_MASK != ~((HEAP_PREV_BIT | HEAP_NEXT_BIT | \
~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c:242:21: warning: unused function 'x_NextBit' [-Wunused-function]
static unsigned int x_NextBit(TNCBI_Size size)
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c:251:21: warning: unused function 'x_PrevBit' [-Wunused-function]
static unsigned int x_PrevBit(TNCBI_Size size)
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket.c:2765:14: warning: variable 'error' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized]
(x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/
^~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket.c:2802:13: note: uninitialized use occurs here
if (error == SOCK_EWOULDBLOCK || error == SOCK_EAGAIN) {
^~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket.c:2765:14: note: remove the '&&' if its condition is always true
(x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/
^~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket.c:2756:18: note: initialize the variable 'error' to silence this warning
int error;
^
= 0
3 warnings generated.
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos.c:1270:18: warning: array subscript is of type 'char' [-Wchar-subscripts]
if (!isalnum(host[i]) && (host[i] != '.')) {
^~~~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:48:44: note: expanded from macro 'isalnum'
#define isalnum(c) ((int)((_ctype_tab_ + 1)[(c)] & (_CTYPE_A|_CTYPE_D)))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos.c:2235:14: warning: array subscript is of type 'char' [-Wchar-subscripts]
if (!isdigit(port_str[i])) {
^~~~~~~~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:51:44: note: expanded from macro 'isdigit'
#define isdigit(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_D))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos.c:2474:13: warning: array subscript is of type 'char' [-Wchar-subscripts]
if (isspace(service[i])) {
^~~~~~~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:558:5: warning: array subscript is of type 'char' [-Wchar-subscripts]
SKIP_WHITESPACES(string);
^~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES'
#define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); }
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:586:5: warning: array subscript is of type 'char' [-Wchar-subscripts]
SKIP_WHITESPACES(string);
^~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES'
#define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); }
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:593:9: warning: array subscript is of type 'char' [-Wchar-subscripts]
SKIP_WHITESPACES(string);
^~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES'
#define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); }
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:612:9: warning: array subscript is of type 'char' [-Wchar-subscripts]
SKIP_WHITESPACES(string);
^~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES'
#define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); }
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:616:9: warning: array subscript is of type 'char' [-Wchar-subscripts]
SKIP_WHITESPACES(string);
^~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES'
#define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); }
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:618:5: warning: array subscript is of type 'char' [-Wchar-subscripts]
SKIP_WHITESPACES(string);
^~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES'
#define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); }
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:634:5: warning: array subscript is of type 'char' [-Wchar-subscripts]
SKIP_WHITESPACES(string);
^~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES'
#define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); }
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:650:9: warning: array subscript is of type 'char' [-Wchar-subscripts]
SKIP_WHITESPACES(string);
^~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES'
#define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); }
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:654:9: warning: array subscript is of type 'char' [-Wchar-subscripts]
SKIP_WHITESPACES(string);
^~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES'
#define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); }
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:656:5: warning: array subscript is of type 'char' [-Wchar-subscripts]
SKIP_WHITESPACES(string);
^~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:44:38: note: expanded from macro 'SKIP_WHITESPACES'
#define SKIP_WHITESPACES(str) while (isspace(**str)) { SKIP_CHAR(str); }
^~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c:438:34: warning: format specifies type 'unsigned short' but the argument has type 'int' [-Wformat]
sprintf(reg_def_port, "%hu", REG_NAMERD_PROXY_PORT_DEF);
~~~ ^~~~~~~~~~~~~~~~~~~~~~~~~
%d
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c:112:37: note: expanded from macro 'REG_NAMERD_PROXY_PORT_DEF'
#define REG_NAMERD_PROXY_PORT_DEF 4140
^~~~
3 warnings generated.
1 warning generated.
10 warnings generated.
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_localip.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ipv6.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos.c.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_connector.c.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connection.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connutil.c.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_util.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_priv.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_types.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_buffer.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ansi_ext.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbsmd_stub.c.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c -o parson.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o
/bin/rm -f libconnect.a .libconnect.a.stamp
ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libconnect.a
/bin/ln -f .connect.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.connect.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xxconnect -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_monkey.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_userhost.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe_connector.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_session.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_misc.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_stream.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/email_diag_handler.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_cxx.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core_cxx.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_test.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o
/bin/rm -f libxxconnect.a .libxxconnect.a.stamp
ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxxconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxxconnect.a
/bin/ln -f .xxconnect.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xxconnect.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xconnect -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/bin/rm -f libxconnect.a .libxconnect.a.stamp
ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxconnect.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxconnect.a
/bin/ln -f .xconnect.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xconnect.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xthrserv -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp:47:20: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations]
CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here
NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimisc.hpp:1105:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS'
#define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class)
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimisc.hpp:1099:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR'
# define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp:52:5: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations]
CThreadedServer& m_Server; // NCBI_FAKE_WARNING
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here
NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimisc.hpp:1105:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS'
#define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class)
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimisc.hpp:1099:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR'
# define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
2 warnings generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/server_monitor.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/server.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/connection_pool.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/server.cpp -o server.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o
/bin/rm -f libxthrserv.a .libxthrserv.a.stamp
ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxthrserv.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxthrserv.a
/bin/ln -f .xthrserv.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xthrserv.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -C services -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=xconnserv -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=xconnserv -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_params.cpp:256:20: warning: private field 'm_TypeHash' is not used [-Wunused-private-field]
size_t m_TypeHash = 0;
^
1 warning generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/util.cpp -o util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/clparser.cpp -o clparser.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/tmp_wn_info.cpp -o tmp_wn_info.o
/bin/rm -f libxconnserv.a .libxconnserv.a.stamp
ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o tmp_wn_info.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxconnserv.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxconnserv.a
/bin/ln -f .xconnserv.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xconnserv.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/neticache_client.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o
/bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp
/bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp
ar cr libncbi_xcache_netcache.a neticache_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -o libncbi_xcache_netcache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC neticache_client.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -lpthread
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xcache_netcache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a
/bin/ln -f .ncbi_xcache_netcache.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xcache_netcache-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so
/bin/ln -f .ncbi_xcache_netcache-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/blob_storage_netcache.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o
/bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp
ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xblobstorage_netcache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a
/bin/ln -f .ncbi_xblobstorage_netcache.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -C ext -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/ext'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/test'
/usr/pkg/bin/gmake -C daemons -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/daemons'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/daemons'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -C cgi -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi/test/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=cgi -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=fcgi -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=cgi -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/user_agent.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_entry_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp_cached.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_exception.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_session.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_util.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_run.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbires.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgictx.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgir.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_serial.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgi.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ref_args.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o
/bin/rm -f libxcgi.a .libxcgi.a.stamp
ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxcgi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcgi.a
/bin/ln -f .xcgi.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcgi.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=fcgi -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/fcgi_run.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include -DNCBI_XFCGI_EXPORTS /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o
/bin/rm -f libxfcgi.a .libxfcgi.a.stamp
ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxfcgi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxfcgi.a
/bin/ln -f .xfcgi.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xfcgi.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi/test'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -C html -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/demo/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/demo/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/demo/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html TMPL=html -w -j --jobserver-fds=5,6 export-headers
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html'
gmake[3]: Nothing to be done for 'export-headers'.
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html TMPL=html -w -j --jobserver-fds=5,6 all
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/html_exception.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/indentstream.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/commentdiag.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/components.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/selection.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/page.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/writer_htmlenc.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/pager.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/htmlhelper.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/html.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/node.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/node.cpp -o node.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/html.cpp -o html.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/page.cpp -o page.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/pager.cpp -o pager.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/selection.cpp -o selection.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/components.cpp -o components.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/indentstream.cpp -o indentstream.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/html_exception.cpp -o html_exception.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o
/bin/rm -f libxhtml.a .libxhtml.a.stamp
ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxhtml.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxhtml.a
/bin/ln -f .xhtml.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xhtml.dep
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/test'
/usr/pkg/bin/gmake -C demo -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/demo'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/demo'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html'
/usr/pkg/bin/gmake -C build-system -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system'
/usr/pkg/bin/gmake -C helpers -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/helpers'
/usr/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'.
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/helpers'
/usr/pkg/bin/gmake -C project_tree_builder -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/pkg/lib -lpcre -lm -lpthread -o project_tree_builder
strip project_tree_builder
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f project_tree_builder /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/project_tree_builder
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
/usr/pkg/bin/gmake -C msbuild -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
NOTE: Skipping project msbuild due to unmet requirements:
MSWin
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j --jobserver-fds=5,6 mark-as-disabled
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system'
/usr/pkg/bin/gmake -C serial -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/soap/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/test/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/soap/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT soap/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/soap/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=serial -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=cserial -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=serial -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/pathhook.cpp.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/member.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/classinfob.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/item.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/memberlist.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/memberid.cpp.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/autoptrinfo.cpp.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/typeinfo.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/hookdatakey.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/hookdata.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objectiter.cpp -o objectiter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objectio.cpp -o objectio.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/typeref.cpp -o typeref.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/typemap.cpp -o typemap.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/enumerated.cpp -o enumerated.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/continfo.cpp -o continfo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/stltypes.cpp -o stltypes.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/memberid.cpp -o memberid.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/memberlist.cpp -o memberlist.o
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/bin/rm -f libxser.a .libxser.a.stamp
ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxser.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxser.a
/bin/ln -f .xser.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xser.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=cserial -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/asntypes.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/serialasn.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o
/bin/rm -f libxcser.a .libxcser.a.stamp
ar cr libxcser.a asntypes.o serialasn.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxcser.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcser.a
/bin/ln -f .xcser.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcser.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -C datatool -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool TMPL=datatool -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_node.cpp.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicetype.cpp.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/statictype.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/namespace.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/type.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/datatool.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/type.cpp -o type.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool
strip datatool
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f datatool /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/test'
/usr/pkg/bin/gmake -C soap -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/soap'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/soap'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -C db -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/bdb/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/bdb/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT bdb/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/bdb/Makefile
/usr/pkg/bin/gmake -C sqlite -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o
/bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp
ar cr libsqlitewrapp.a sqlitewrapp.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libsqlitewrapp.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a
/bin/ln -f .sqlitewrapp.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite'
/usr/pkg/bin/gmake -C bdb -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/bdb'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/bdb'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db'
/usr/pkg/bin/gmake -C dbapi -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/simple/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/lang_bind/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/lang_bind/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/simple/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lang_bind/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT simple/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi TMPL=dbapi -w -j --jobserver-fds=5,6 export-headers
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: Nothing to be done for 'export-headers'.
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi TMPL=dbapi -w -j --jobserver-fds=5,6 all
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/bulkinsert.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cursor_impl.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/blobstream.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cstmt_impl.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rsmeta_impl.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/err_handler.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/conn_impl.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/stmt_impl.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/ds_impl.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rw_impl.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rs_impl.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/bytestreambuf.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver_mgr.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/dbapi.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/variant.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/active_obj.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/variant.cpp -o variant.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o
/bin/rm -f libdbapi.a .libdbapi.a.stamp
ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libdbapi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdbapi.a
/bin/ln -f .dbapi.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.dbapi.dep
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi'
/usr/pkg/bin/gmake -C driver -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/util/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dblib/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/mysql/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/samples/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dblib/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dblib/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/util/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/samples/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/mysql/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ctlib/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ftds64/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT util/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT dblib/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ftds95/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ftds-default/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT samples/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT mysql/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/dblib/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/pointer_pot.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/driver_mgr.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/memory_store.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/types.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/public.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/interfaces.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/exception.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/parameters.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/numeric_convert.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/handle_stack.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/exception.cpp -o exception.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/public.cpp -o public.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/types.cpp -o types.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o
/bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp
/bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp
ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lm -lpthread
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libdbapi_driver.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a
/bin/ln -f .dbapi_driver.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libdbapi_driver-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so
/bin/ln -f .dbapi_driver-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep
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/usr/pkg/bin/gmake -C mysql -w -j --jobserver-fds=5,6 all_r || exit 5
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/usr/pkg/bin/gmake -C odbc -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
NOTE: Skipping project odbc due to unmet requirements:
ODBC
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w -j --jobserver-fds=5,6 mark-as-disabled
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
/bin/echo 'Warning: non-existent sub-project "samples"'
Warning: non-existent sub-project "samples"
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
/usr/pkg/bin/gmake -C samples -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/samples'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/samples'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver'
/usr/pkg/bin/gmake -C simple -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/simple'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/simple'
/usr/pkg/bin/gmake -C cache -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/admintool/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/test/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/admintool/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/admintool/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT admintool/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/test/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp -o dbapi_blob_cache.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp -o dbapi_blob_cache_cf.o
/bin/rm -f libncbi_xcache_dbapi.a .libncbi_xcache_dbapi.a.stamp
/bin/rm -f libncbi_xcache_dbapi-dll.so .libncbi_xcache_dbapi-dll.so.stamp
ar cr libncbi_xcache_dbapi.a dbapi_blob_cache.o dbapi_blob_cache_cf.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -o libncbi_xcache_dbapi-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC dbapi_blob_cache.o dbapi_blob_cache_cf.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -ldbapi -ldbapi_driver-dll -lm -lpthread
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xcache_dbapi.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi.a
/bin/ln -f .ncbi_xcache_dbapi.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi.dep
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xcache_dbapi-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi-dll.so
/bin/ln -f .ncbi_xcache_dbapi-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi-dll.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/test'
/usr/pkg/bin/gmake -C admintool -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache'
/usr/pkg/bin/gmake -C lang_bind -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/lang_bind'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/lang_bind'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/test'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi'
/usr/pkg/bin/gmake -C objects -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects'
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/Makefile.sources builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects -w -j --jobserver-fds=5,6 all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
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gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects || exit 2; \
for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \
if test -f "$i/$i.asn"; then \
MAKE="/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6"; export MAKE; \
( cd $i && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \
|| case "-w -j --jobserver-fds=5,6" in *k*) ;; *) exit 2 ;; esac; \
else \
echo "Warning: $i/$i.asn not found (skipping)"; \
fi; \
done
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA -oc omssa -or objects/omssa -odi -od omssa.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m access.asn -M "" -oA -oc access -or objects/access -odi -od access.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd access.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb'
File blastxml.module not found. Using defaults...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml'
File blastxml2.module not found. Using defaults...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA -oc cdd -or objects/cdd -odi -od cdd.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m docsum.asn -M "" -oA -oc docsum -or objects/docsum -odi -od docsum.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA -oc biotree -or objects/biotree -odi -od biotree.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m featdef.asn -M "" -oA -oc featdef -or objects/featdef -odi -od featdef.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m insdseq.asn -M "" -oA -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m macro.asn -M "" -oA -oc macro -or objects/macro -odi -od macro.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
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[2] Terminated ${script_dir}/ch...
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[2] Terminated ${script_dir}/ch...
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[2] Terminated ${script_dir}/ch...
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[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
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[2] Terminated ${script_dir}/ch...
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[2] Terminated ${script_dir}/ch...
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[2] Terminated ${script_dir}/ch...
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[2] Terminated ${script_dir}/ch...
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[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
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[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m mim.asn -M "" -oA -oc mim -or objects/mim -odi -od mim.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m objprt.asn -M "" -oA -oc objprt -or objects/objprt -odi -od objprt.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA -oc proj -or objects/proj -odi -od proj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock/seqblock.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blas[2] Terminated ${script_dir}/ch...
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t+/work/ncbi-blast-2.7.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m tinyseq.asn -M "" -oA -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA -oc remap -or objects/remap -odi -od remap.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA -oc homologene -or objects/homologene -odi -od homologene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m genesbyloc.asn -M "" -oA -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects'
/usr/pkg/bin/gmake -C general -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/unit_test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/test/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/unit_test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh general all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general TMPL=general -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general TMPL=general -w -j --jobserver-fds=5,6 all
t+/work/ncbi-blast-2.7.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m tinyseq.asn -M "" -oA -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA -oc remap -or objects/remap -odi -od remap.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA -oc homologene -or objects/homologene -odi -od homologene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m genesbyloc.asn -M "" -oA -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/uoconv.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general__.cpp -o general__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general___.cpp -o general___.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o
/bin/rm -f libgeneral.a .libgeneral.a.stamp
ar cr libgeneral.a general__.o general___.o uoconv.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgeneral.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgeneral.a
/bin/ln -f .general.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.general.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/test'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/unit_test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general'
/usr/pkg/bin/gmake -C biblio -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh biblio all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio TMPL=biblio -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio TMPL=biblio -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/citation_base.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o
/bin/rm -f libbiblio.a .libbiblio.a.stamp
ar cr libbiblio.a biblio__.o biblio___.o citation_base.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libbiblio.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libbiblio.a
/bin/ln -f .biblio.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.biblio.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio'
/usr/pkg/bin/gmake -C medline -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh medline all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline TMPL=medline -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline TMPL=medline -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o
/bin/rm -f libmedline.a .libmedline.a.stamp
ar cr libmedline.a medline__.o medline___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmedline.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmedline.a
/bin/ln -f .medline.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.medline.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline'
/usr/pkg/bin/gmake -C pub -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pub all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline'
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub TMPL=pub -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub TMPL=pub -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o
/bin/rm -f libpub.a .libpub.a.stamp
ar cr libpub.a pub__.o pub___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libpub.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpub.a
/bin/ln -f .pub.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pub.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub'
/usr/pkg/bin/gmake -C seqcode -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub'
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode TMPL=seqcode -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode TMPL=seqcode -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o
/bin/rm -f libseqcode.a .libseqcode.a.stamp
ar cr libseqcode.a seqcode__.o seqcode___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqcode.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqcode.a
/bin/ln -f .seqcode.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqcode.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode'
/usr/pkg/bin/gmake -C seq -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/unit_test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/test/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/unit_test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/Makefile.sources builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -w -j --jobserver-fds=5,6 all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
status=0 ; \
MAKE="/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6"; \
export MAKE; \
for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \
d=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../$x ; \
(cd $d && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \
test -f ${x}__.cpp || \
echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \
test -f ${x}___.cpp || \
echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \
done ; \
exit $status
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seq all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock/seqblock.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq TMPL=seq -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq TMPL=seq -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
status=0 ; \
MAKE="/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6"; \
export MAKE; \
for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \
d=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../$x ; \
(cd $d && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \
test -f ${x}__.cpp || \
echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \
test -f ${x}___.cpp || \
echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \
done ; \
exit $status
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock/seqblock.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq'
In file included from seqfeat__.cpp:1:
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:21: warning: 'Find' is deprecated [-Wdeprecated-declarations]
pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:52:9: warning: private field 'm_dummy' is not used [-Wunused-private-field]
int m_dummy;
^
1 warning generated.
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp:39:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:52:9: warning: private field 'm_dummy' is not used [-Wunused-private-field]
int m_dummy;
^
1 warning generated.
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/so_map.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/sofa_map.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seqlocinfo.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_mapper.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_handle.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_tree.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seqport_util.cpp.
Updating dependency information for seqtable___.cpp.
Updating dependency information for seqloc___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp.
Updating dependency information for seqfeat___.cpp.
Updating dependency information for seqres___.cpp.
Updating dependency information for seqblock___.cpp.
Updating dependency information for seqalign___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq___.cpp.
Updating dependency information for seqtable__.cpp.
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Updating dependency information for seqloc__.cpp.
Updating dependency information for seqfeat__.cpp.
Updating dependency information for seqalign__.cpp.
Updating dependency information for seqblock__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq__.cpp.
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o
/bin/rm -f libseq.a .libseq.a.stamp
ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseq.a
/bin/ln -f .seq.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seq.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/test'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/unit_test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -C seqset -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqset all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset TMPL=seqset -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset TMPL=seqset -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/gb_release_file.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o
/bin/rm -f libseqset.a .libseqset.a.stamp
ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqset.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqset.a
/bin/ln -f .seqset.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqset.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset'
/usr/pkg/bin/gmake -C submit -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh submit all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit TMPL=submit -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit TMPL=submit -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o
/bin/rm -f libsubmit.a .libsubmit.a.stamp
ar cr libsubmit.a submit__.o submit___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libsubmit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libsubmit.a
/bin/ln -f .submit.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.submit.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit'
/usr/pkg/bin/gmake -C seqedit -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit TMPL=seqedit -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit TMPL=seqedit -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o
/bin/rm -f libseqedit.a .libseqedit.a.stamp
ar cr libseqedit.a seqedit__.o seqedit___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqedit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqedit.a
/bin/ln -f .seqedit.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqedit.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit'
/usr/pkg/bin/gmake -C seqsplit -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o
/bin/rm -f libseqsplit.a .libseqsplit.a.stamp
ar cr libseqsplit.a seqsplit__.o seqsplit___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqsplit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqsplit.a
/bin/ln -f .seqsplit.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqsplit.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit'
/usr/pkg/bin/gmake -C id1 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh id1 all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1 -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1cli -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1 -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o
/bin/rm -f libid1.a .libid1.a.stamp
ar cr libid1.a id1__.o id1___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libid1.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid1.a
/bin/ln -f .id1.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id1.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1cli -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client_.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o
/bin/rm -f libid1cli.a .libid1cli.a.stamp
ar cr libid1cli.a id1_client.o id1_client_.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libid1cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid1cli.a
/bin/ln -f .id1cli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id1cli.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -C id2 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh id2 all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2 -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2cli -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2 -w -j --jobserver-fds=5,6 all
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2__.cpp:26:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: moving a temporary object prevents copy elision [-Wpessimizing-move]
replies = move(ProcessSomeRequests(packet));
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: note: remove std::move call here
replies = move(ProcessSomeRequests(packet));
^~~~~ ~
1 warning generated.
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o
/bin/rm -f libid2.a .libid2.a.stamp
ar cr libid2.a id2__.o id2___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libid2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid2.a
/bin/ln -f .id2.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id2.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2cli -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client_.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o
/bin/rm -f libid2cli.a .libid2cli.a.stamp
ar cr libid2cli.a id2_client.o id2_client_.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libid2cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid2cli.a
/bin/ln -f .id2cli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id2cli.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -C entrez2 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/demo/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/demo/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o
/bin/rm -f libentrez2.a .libentrez2.a.stamp
ar cr libentrez2.a entrez2__.o entrez2___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libentrez2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libentrez2.a
/bin/ln -f .entrez2.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.entrez2.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o
/bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp
ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libentrez2cli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libentrez2cli.a
/bin/ln -f .entrez2cli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.entrez2cli.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -C demo -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2/demo'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2/demo'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -C pubmed -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed TMPL=pubmed -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed TMPL=pubmed -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o
/bin/rm -f libpubmed.a .libpubmed.a.stamp
ar cr libpubmed.a pubmed__.o pubmed___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libpubmed.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpubmed.a
/bin/ln -f .pubmed.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pubmed.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed'
/usr/pkg/bin/gmake -C medlars -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh medlars all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars TMPL=medlars -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars TMPL=medlars -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o
/bin/rm -f libmedlars.a .libmedlars.a.stamp
ar cr libmedlars.a medlars__.o medlars___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmedlars.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmedlars.a
/bin/ln -f .medlars.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.medlars.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars'
/usr/pkg/bin/gmake -C mla -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh mla all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mla -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mlacli -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mla -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o
/bin/rm -f libmla.a .libmla.a.stamp
ar cr libmla.a mla__.o mla___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmla.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmla.a
/bin/ln -f .mla.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mla.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mlacli -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client_.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o
/bin/rm -f libmlacli.a .libmlacli.a.stamp
ar cr libmlacli.a mla_client.o mla_client_.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmlacli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmlacli.a
/bin/ln -f .mlacli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mlacli.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -C proj -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh proj all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj TMPL=proj -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj TMPL=proj -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o
/bin/rm -f libproj.a .libproj.a.stamp
ar cr libproj.a proj__.o proj___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libproj.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libproj.a
/bin/ln -f .proj.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.proj.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj'
/usr/pkg/bin/gmake -C scoremat -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat TMPL=scoremat -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat TMPL=scoremat -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o
/bin/rm -f libscoremat.a .libscoremat.a.stamp
ar cr libscoremat.a scoremat__.o scoremat___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libscoremat.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libscoremat.a
/bin/ln -f .scoremat.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.scoremat.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat'
/usr/pkg/bin/gmake -C blast -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blast all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=blast -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=blast -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/names.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/names.cpp -o names.o
/bin/rm -f libxnetblast.a .libxnetblast.a.stamp
ar cr libxnetblast.a blast__.o blast___.o names.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxnetblast.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxnetblast.a
/bin/ln -f .xnetblast.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xnetblast.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient_.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o
/bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp
ar cr libxnetblastcli.a blastclient.o blastclient_.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxnetblastcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a
/bin/ln -f .xnetblastcli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -C blastdb -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb TMPL=blastdb -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb TMPL=blastdb -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o
/bin/rm -f libblastdb.a .libblastdb.a.stamp
ar cr libblastdb.a blastdb__.o blastdb___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblastdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastdb.a
/bin/ln -f .blastdb.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastdb.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb'
/usr/pkg/bin/gmake -C blastxml -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml TMPL=blastxml -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml TMPL=blastxml -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o
/bin/rm -f libblastxml.a .libblastxml.a.stamp
ar cr libblastxml.a blastxml__.o blastxml___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblastxml.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastxml.a
/bin/ln -f .blastxml.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastxml.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml'
/usr/pkg/bin/gmake -C blastxml2 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o
/bin/rm -f libblastxml2.a .libblastxml2.a.stamp
ar cr libblastxml2.a blastxml2__.o blastxml2___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblastxml2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastxml2.a
/bin/ln -f .blastxml2.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastxml2.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2'
/usr/pkg/bin/gmake -C mmdb -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -w -j --jobserver-fds=5,6 all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
status=0 ; \
MAKE="/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6"; \
export MAKE; \
for x in mmdb1 mmdb2 mmdb3; do \
d=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/../$x ; \
(cd $d && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \
test -f ${x}__.cpp || \
echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \
test -f ${x}___.cpp || \
echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \
done ; \
exit $status
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb TMPL=mmdb -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb TMPL=mmdb -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
status=0 ; \
MAKE="/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6"; \
export MAKE; \
for x in mmdb1 mmdb2 mmdb3; do \
d=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/../$x ; \
(cd $d && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \
test -f ${x}__.cpp || \
echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \
test -f ${x}___.cpp || \
echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \
done ; \
exit $status
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
Updating dependency information for mmdb3___.cpp.
Updating dependency information for mmdb1___.cpp.
Updating dependency information for mmdb3__.cpp.
Updating dependency information for mmdb2__.cpp.
Updating dependency information for mmdb1__.cpp.
Updating dependency information for mmdb2___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb1__.cpp -o mmdb1__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb2__.cpp -o mmdb2__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb3__.cpp -o mmdb3__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb1___.cpp -o mmdb1___.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb2___.cpp -o mmdb2___.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb3___.cpp -o mmdb3___.o
/bin/rm -f libmmdb.a .libmmdb.a.stamp
ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmmdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmmdb.a
/bin/ln -f .mmdb.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mmdb.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb'
/usr/pkg/bin/gmake -C cn3d -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d TMPL=cn3d -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d TMPL=cn3d -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o
/bin/rm -f libcn3d.a .libcn3d.a.stamp
ar cr libcn3d.a cn3d__.o cn3d___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libcn3d.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcn3d.a
/bin/ln -f .cn3d.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.cn3d.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d'
/usr/pkg/bin/gmake -C cdd -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh cdd all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd TMPL=cdd -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd TMPL=cdd -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o
/bin/rm -f libcdd.a .libcdd.a.stamp
ar cr libcdd.a cdd__.o cdd___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libcdd.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcdd.a
/bin/ln -f .cdd.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.cdd.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd'
/usr/pkg/bin/gmake -C ncbimime -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o
/bin/rm -f libncbimime.a .libncbimime.a.stamp
ar cr libncbimime.a ncbimime__.o ncbimime___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbimime.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbimime.a
/bin/ln -f .ncbimime.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbimime.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime'
/usr/pkg/bin/gmake -C pcsubstance -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o
/bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp
ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libpcsubstance.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpcsubstance.a
/bin/ln -f .pcsubstance.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pcsubstance.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
/usr/pkg/bin/gmake -C pcassay -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay TMPL=pcassay -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay TMPL=pcassay -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o
/bin/rm -f libpcassay.a .libpcassay.a.stamp
ar cr libpcassay.a pcassay__.o pcassay___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libpcassay.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpcassay.a
/bin/ln -f .pcassay.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pcassay.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay'
/usr/pkg/bin/gmake -C gbseq -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq TMPL=gbseq -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq TMPL=gbseq -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o
/bin/rm -f libgbseq.a .libgbseq.a.stamp
ar cr libgbseq.a gbseq__.o gbseq___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgbseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgbseq.a
/bin/ln -f .gbseq.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gbseq.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq'
/usr/pkg/bin/gmake -C insdseq -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq TMPL=insdseq -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq TMPL=insdseq -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o
/bin/rm -f libinsdseq.a .libinsdseq.a.stamp
ar cr libinsdseq.a insdseq__.o insdseq___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libinsdseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libinsdseq.a
/bin/ln -f .insdseq.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.insdseq.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq'
/usr/pkg/bin/gmake -C tinyseq -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o
/bin/rm -f libtinyseq.a .libtinyseq.a.stamp
ar cr libtinyseq.a tinyseq__.o tinyseq___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtinyseq.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtinyseq.a
/bin/ln -f .tinyseq.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.tinyseq.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq'
/usr/pkg/bin/gmake -C biotree -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh biotree all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree TMPL=biotree -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree TMPL=biotree -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o
/bin/rm -f libbiotree.a .libbiotree.a.stamp
ar cr libbiotree.a biotree__.o biotree___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libbiotree.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libbiotree.a
/bin/ln -f .biotree.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.biotree.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree'
/usr/pkg/bin/gmake -C entrezgene -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o
/bin/rm -f libentrezgene.a .libentrezgene.a.stamp
ar cr libentrezgene.a entrezgene__.o entrezgene___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libentrezgene.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libentrezgene.a
/bin/ln -f .entrezgene.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.entrezgene.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene'
/usr/pkg/bin/gmake -C omssa -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh omssa all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa TMPL=omssa -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa TMPL=omssa -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o
/bin/rm -f libomssa.a .libomssa.a.stamp
ar cr libomssa.a omssa__.o omssa___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libomssa.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libomssa.a
/bin/ln -f .omssa.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.omssa.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa'
/usr/pkg/bin/gmake -C remap -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh remap all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remap -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remapcli -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remap -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o
/bin/rm -f libremap.a .libremap.a.stamp
ar cr libremap.a remap__.o remap___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libremap.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libremap.a
/bin/ln -f .remap.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.remap.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remapcli -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client_.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o
/bin/rm -f libremapcli.a .libremapcli.a.stamp
ar cr libremapcli.a remap_client.o remap_client_.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libremapcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libremapcli.a
/bin/ln -f .remapcli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.remapcli.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -C seqtest -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest TMPL=seqtest -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest TMPL=seqtest -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o
/bin/rm -f libseqtest.a .libseqtest.a.stamp
ar cr libseqtest.a seqtest__.o seqtest___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqtest.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqtest.a
/bin/ln -f .seqtest.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqtest.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest'
/usr/pkg/bin/gmake -C taxon1 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/utils.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/cache.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/ctreecont.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o
/bin/rm -f libtaxon1.a .libtaxon1.a.stamp
ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtaxon1.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtaxon1.a
/bin/ln -f .taxon1.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.taxon1.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1'
/usr/pkg/bin/gmake -C taxon3 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3 && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o
/bin/rm -f libtaxon3.a .libtaxon3.a.stamp
ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtaxon3.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtaxon3.a
/bin/ln -f .taxon3.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.taxon3.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3'
/usr/pkg/bin/gmake -C gbproj -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj TMPL=gbproj -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj TMPL=gbproj -w -j --jobserver-fds=5,6 all
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable]
CProjectItem& item = **it;
^
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj'
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o
/bin/rm -f libgbproj.a .libgbproj.a.stamp
ar cr libgbproj.a gbproj__.o gbproj___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgbproj.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgbproj.a
/bin/ln -f .gbproj.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gbproj.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj'
/usr/pkg/bin/gmake -C trackmgr -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o
/bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp
ar cr libtrackmgr.a trackmgr__.o trackmgr___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtrackmgr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtrackmgr.a
/bin/ln -f .trackmgr.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.trackmgr.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o
/bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp
ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtrackmgrcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a
/bin/ln -f .trackmgrcli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackset_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/blast_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/tms_exception.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o
/bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp
ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtrackmgrgridcli.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a
/bin/ln -f .trackmgrgridcli.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -C valerr -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh valerr all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr TMPL=valerr -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr TMPL=valerr -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o
/bin/rm -f libvalerr.a .libvalerr.a.stamp
ar cr libvalerr.a valerr__.o valerr___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libvalerr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvalerr.a
/bin/ln -f .valerr.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.valerr.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr'
/usr/pkg/bin/gmake -C valid -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh valid all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid TMPL=valid -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid TMPL=valid -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o
/bin/rm -f libvalid.a .libvalid.a.stamp
ar cr libvalid.a valid__.o valid___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libvalid.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvalid.a
/bin/ln -f .valid.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.valid.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid'
/usr/pkg/bin/gmake -C access -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh access all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access TMPL=access -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access TMPL=access -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access/access__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access/access___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access/access__.cpp -o access__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access/access___.cpp -o access___.o
/bin/rm -f libaccess.a .libaccess.a.stamp
ar cr libaccess.a access__.o access___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libaccess.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libaccess.a
/bin/ln -f .access.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.access.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access'
/usr/pkg/bin/gmake -C docsum -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh docsum all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum TMPL=docsum -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum TMPL=docsum -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o
/bin/rm -f libdocsum.a .libdocsum.a.stamp
ar cr libdocsum.a docsum__.o docsum___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libdocsum.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdocsum.a
/bin/ln -f .docsum.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.docsum.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum'
/usr/pkg/bin/gmake -C featdef -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh featdef all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef TMPL=featdef -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef TMPL=featdef -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o
/bin/rm -f libfeatdef.a .libfeatdef.a.stamp
ar cr libfeatdef.a featdef__.o featdef___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libfeatdef.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libfeatdef.a
/bin/ln -f .featdef.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.featdef.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef'
/usr/pkg/bin/gmake -C genomecoll -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all
Waiting for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/make_asn.lock/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
.
Acquired /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 264 (make_asn)
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump
datatool: 2.17.0
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o
/bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp
ar cr libgenome_collection.a genome_collection__.o genome_collection___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgenome_collection.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgenome_collection.a
/bin/ln -f .genome_collection.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.genome_collection.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: warning: adding 'std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::size_type' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int]
NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:550:45: note: expanded from macro 'NCBI_THROW'
message)); \
^~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:539:51: note: expanded from macro 'NCBI_EXCEPTION'
exception_class, err_code, message)
^~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:526:63: note: expanded from macro 'NCBI_EXCEPTION_VAR'
NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message)
^~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:522:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX'
prev_exception_ptr, exception_class::err_code, (message))
^~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:530:12: note: expanded from macro 'NCBI_EXCEPTION_THROW'
throw (exception_var)
^~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: note: use array indexing to silence this warning
NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size());
^
& [
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:550:45: note: expanded from macro 'NCBI_THROW'
message)); \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:539:51: note: expanded from macro 'NCBI_EXCEPTION'
exception_class, err_code, message)
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:526:63: note: expanded from macro 'NCBI_EXCEPTION_VAR'
NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message)
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:522:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX'
prev_exception_ptr, exception_class::err_code, (message))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:530:12: note: expanded from macro 'NCBI_EXCEPTION_THROW'
throw (exception_var)
^
1 warning generated.
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:42:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:66:5: warning: 'GetType' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1144:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT'
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1079:25: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON'
virtual const char* GetType(void) const {return #exception_class;} \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:838:25: note: overridden virtual function is here
virtual const char* GetType(void) const;
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:42:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:66:5: warning: 'Throw' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1144:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT'
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1087:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON'
NCBI_EXCEPTION_DEFAULT_THROW(exception_class) \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1065:32: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_THROW'
NCBI_NORETURN virtual void Throw(void) const \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:774:32: note: overridden virtual function is here
NCBI_NORETURN virtual void Throw(void) const;
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:42:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:66:5: warning: 'x_Clone' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1144:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT'
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1090:31: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON'
virtual const CException* x_Clone(void) const \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:907:31: note: overridden virtual function is here
virtual const CException* x_Clone(void) const;
^
3 warnings generated.
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:66:5: warning: 'GetType' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1144:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT'
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1079:25: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON'
virtual const char* GetType(void) const {return #exception_class;} \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:838:25: note: overridden virtual function is here
virtual const char* GetType(void) const;
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:66:5: warning: 'Throw' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1144:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT'
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1087:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON'
NCBI_EXCEPTION_DEFAULT_THROW(exception_class) \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1065:32: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_THROW'
NCBI_NORETURN virtual void Throw(void) const \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:774:32: note: overridden virtual function is here
NCBI_NORETURN virtual void Throw(void) const;
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:66:5: warning: 'x_Clone' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1144:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT'
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1090:31: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON'
virtual const CException* x_Clone(void) const \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:907:31: note: overridden virtual function is here
virtual const CException* x_Clone(void) const;
^
3 warnings generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o
/bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp
ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgencoll_client.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgencoll_client.a
/bin/ln -f .gencoll_client.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gencoll_client.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -C gc_cli -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -w -j --jobserver-fds=5,6 all
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:41:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:66:5: warning: 'GetType' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1144:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT'
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1079:25: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON'
virtual const char* GetType(void) const {return #exception_class;} \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:838:25: note: overridden virtual function is here
virtual const char* GetType(void) const;
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:41:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:66:5: warning: 'Throw' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1144:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT'
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1087:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON'
NCBI_EXCEPTION_DEFAULT_THROW(exception_class) \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1065:32: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_THROW'
NCBI_NORETURN virtual void Throw(void) const \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:774:32: note: overridden virtual function is here
NCBI_NORETURN virtual void Throw(void) const;
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:41:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:66:5: warning: 'x_Clone' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
NCBI_EXCEPTION_DEFAULT(CGCServiceException, CException);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1144:5: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT'
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:1090:31: note: expanded from macro 'NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON'
virtual const CException* x_Clone(void) const \
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:907:31: note: overridden virtual function is here
virtual const CException* x_Clone(void) const;
^
3 warnings generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O gc_cli.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o gc_cli
strip gc_cli
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f gc_cli /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/gc_cli
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -C homologene -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh homologene all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene TMPL=homologene -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene TMPL=homologene -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o
/bin/rm -f libhomologene.a .libhomologene.a.stamp
ar cr libhomologene.a homologene__.o homologene___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libhomologene.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libhomologene.a
/bin/ln -f .homologene.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.homologene.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene'
/usr/pkg/bin/gmake -C mim -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh mim all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim TMPL=mim -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim TMPL=mim -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o
/bin/rm -f libmim.a .libmim.a.stamp
ar cr libmim.a mim__.o mim___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmim.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmim.a
/bin/ln -f .mim.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mim.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim'
/usr/pkg/bin/gmake -C objprt -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh objprt all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt TMPL=objprt -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt TMPL=objprt -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o
/bin/rm -f libobjprt.a .libobjprt.a.stamp
ar cr libobjprt.a objprt__.o objprt___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libobjprt.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libobjprt.a
/bin/ln -f .objprt.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.objprt.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt'
/usr/pkg/bin/gmake -C variation -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh variation all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump
datatool: 2.17.0
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation TMPL=variation -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation TMPL=variation -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump
datatool: 2.17.0
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o
/bin/rm -f libvariation.a .libvariation.a.stamp
ar cr libvariation.a variation__.o variation___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libvariation.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvariation.a
/bin/ln -f .variation.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.variation.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation'
/usr/pkg/bin/gmake -C macro -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/unit_test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/unit_test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh macro all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro TMPL=macro -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro TMPL=macro -w -j --jobserver-fds=5,6 all
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:61:24: warning: 'Find' is deprecated [-Wdeprecated-declarations]
size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:74:25: warning: 'Find' is deprecated [-Wdeprecated-declarations]
pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:76:25: warning: 'Find' is deprecated [-Wdeprecated-declarations]
pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:88:24: warning: 'Find' is deprecated [-Wdeprecated-declarations]
size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:99:21: warning: 'Find' is deprecated [-Wdeprecated-declarations]
pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:610:32: warning: 'Find' is deprecated [-Wdeprecated-declarations]
pFound = NStr::Find(search, pattern, 0, NPOS, NStr::eFirst, case_sens);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:620:40: warning: 'Find' is deprecated [-Wdeprecated-declarations]
pFound = NStr::Find(search, pattern, pFound + 1, NPOS, NStr::eFirst, case_sens);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:639:40: warning: 'Find' is deprecated [-Wdeprecated-declarations]
pFound = NStr::Find(search, pattern, pFound + 1, NPOS, NStr::eFirst, case_sens);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:647:32: warning: 'Find' is deprecated [-Wdeprecated-declarations]
pFound = NStr::Find(pattern, search, 0, NPOS, NStr::eFirst, case_sens);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:653:40: warning: 'Find' is deprecated [-Wdeprecated-declarations]
pFound = NStr::Find(pattern.substr(pFound + 1), search, 0, NPOS, NStr::eFirst, case_sens);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro'
10 warnings generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o
/bin/rm -f libmacro.a .libmacro.a.stamp
ar cr libmacro.a macro__.o macro___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmacro.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmacro.a
/bin/ln -f .macro.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.macro.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro/unit_test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro'
/usr/pkg/bin/gmake -C genesbyloc -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o
/bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp
ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgenesbyloc.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a
/bin/ln -f .genesbyloc.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.genesbyloc.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
/usr/pkg/bin/gmake -C coords -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m objcoords.asn -M "" -oA -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump
datatool: 2.17.0
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords TMPL=objcoords -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords TMPL=objcoords -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords___.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords__.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o
/bin/rm -f libobjcoords.a .libobjcoords.a.stamp
ar cr libobjcoords.a objcoords__.o objcoords___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libobjcoords.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libobjcoords.a
/bin/ln -f .objcoords.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.objcoords.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords'
/usr/pkg/bin/gmake -C varrep -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep'
cd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep && /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh varrep all
Platform not defined for NetBSD amd64 -- please fix me
[2] Terminated ${script_dir}/ch...
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m varrep.asn -M "" -oA -oc varrep -or objects/varrep -odi -od varrep.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump
datatool: 2.17.0
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep TMPL=varrep -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep TMPL=varrep -w -j --jobserver-fds=5,6 all
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m objcoords.asn -M "" -oA -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump
datatool: 2.17.0
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords'
/usr/pkg/bin/gmake -w -j --jobserver-fds=5,6 -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep'
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m varrep.asn -M "" -oA -oc varrep -or objects/varrep -odi -od varrep.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump
datatool: 2.17.0
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep__.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep___.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o
/bin/rm -f libvarrep.a .libvarrep.a.stamp
ar cr libvarrep.a varrep__.o varrep___.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libvarrep.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvarrep.a
/bin/ln -f .varrep.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.varrep.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects'
/usr/pkg/bin/gmake -C objmgr -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr TMPL=objmgr -w -j --jobserver-fds=5,6 export-headers
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: Nothing to be done for 'export-headers'.
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr TMPL=objmgr -w -j --jobserver-fds=5,6 all
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split_parser.cpp.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_setters.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/table_field.cpp -o table_field.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/data_source.cpp -o data_source.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/priority.cpp -o priority.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/scope.cpp -o scope.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/heap_scope.cpp -o heap_scope.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/scope_impl.cpp -o scope_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/scope_info.cpp -o scope_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/tse_handle.cpp -o tse_handle.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_map.cpp -o seq_map.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2./data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edit_commands_impl.cpp:50:5: warning: 'operator delete' has a non-throwing exception specification but can still throw [-Wexceptions]
throw runtime_error("forbidden");
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edit_commands_impl.cpp:48:25: note: deallocator has a implicit non-throwing exception specification
void CCommandProcessor::operator delete(void*)
^
1 warning generated.
7.1+-src/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/align_ci.cpp -o align_ci.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o
/bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp
ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjmgr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjmgr.a
/bin/ln -f .xobjmgr.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjmgr.dep
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/test'
/usr/pkg/bin/gmake -C util -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/unit_test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/unit_test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util TMPL=util -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util TMPL=util -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:1376:7: warning: field 'm_IsAssemblyGap' will be initialized after field 'm_Bsx' [-Wreorder]
m_IsAssemblyGap(isAssemblyGap),
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp:3391:40: warning: 'Compare' is deprecated [-Wdeprecated-declarations]
sequence::ECompare cmp = sequence::Compare(cds.GetLocation(), loc, &(cds.GetScope()));
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/seq_loc_util.hpp:198:1: note: 'Compare' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_loc_util.cpp:39:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:52:9: warning: private field 'm_dummy' is not used [-Wunused-private-field]
int m_dummy;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp:83:14: warning: unused variable 'p' [-Wunused-variable]
Iterator p(start);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp:271:12: note: in instantiation of function template specialization 'ncbi::objects::s_GetProteinWeight<std::__1::__wrap_iter<char *> >' requested here
return s_GetProteinWeight(ncbistdaa.begin(),
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1137:17: warning: 'FindNoCase' is deprecated [-Wdeprecated-declarations]
pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2081:5: note: 'FindNoCase' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1716:26: warning: 'Find' is deprecated [-Wdeprecated-declarations]
SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2595:21: warning: 'FindNoCase' is deprecated [-Wdeprecated-declarations]
pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2081:5: note: 'FindNoCase' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2654:33: warning: 'FindNoCase' is deprecated [-Wdeprecated-declarations]
pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2081:5: note: 'FindNoCase' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
1 warning generated.
1 warning generated.
1 warning generated.
1 warning generated.
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:725:28: warning: unused variable 'subtype' [-Wunused-variable]
CSeqFeatData::ESubtype subtype = m_MainFeat.GetData().GetSubtype();
^
4 warnings generated.
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_group.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature_edit.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_options.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_trimmer.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_align_util.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/obj_sniff.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_loc_util.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seqtitle.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o
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/bin/rm -f libxobjutil.a .libxobjutil.a.stamp
ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjutil.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjutil.a
/bin/ln -f .xobjutil.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjutil.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util'
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/size.cpp -o size.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o
/bin/rm -f libid2_split.a .libid2_split.a.stamp
ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libid2_split.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid2_split.a
/bin/ln -f .id2_split.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id2_split.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr'
/usr/pkg/bin/gmake -C objtools -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools'
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test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/lds2/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cddalignview/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/manip/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/test/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align/Makefile.in
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test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/asniotest/Makefile.in
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/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT cddalignview/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lds2/Makefile
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/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT align/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT uudutil/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT snputil/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT validator/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test_util/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT asniotest/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT writers/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT variation/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT eutils/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/eutils/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/manip/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/lds2/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile
/usr/pkg/bin/gmake -C unit_test_util -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/unit_test_util'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/unit_test_util'
/usr/pkg/bin/gmake -C readers -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
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test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/app/Makefile.in
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/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT app/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjread -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjreadex -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjread -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:621:9: warning: 'm_ExpectedEnd' is deprecated [-Wdeprecated-declarations]
m_ExpectedEnd = range_end - range_start;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:5: note: 'm_ExpectedEnd' has been explicitly marked deprecated here
NCBI_DEPRECATED TSeqPos m_ExpectedEnd;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:2162:13: warning: comparison of constant -1 with expression of type 'CSeq_gap::EType' is always false [-Wtautological-constant-out-of-range-compare]
if (type == -1)
~~~~ ^ ~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp:652:23: warning: 'TruncateSpaces' is deprecated [-Wdeprecated-declarations]
auto line = NStr::TruncateSpaces(strLine);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2213:5: note: 'TruncateSpaces' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp:603:10: warning: unused variable 'st' [-Wunused-variable]
auto st = pFeature->GetData().GetSubtype();
^
1 warning generated.
1 warning generated.
2 warnings generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/message_listener.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_converter.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/line_error.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/source_mod_parser.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/best_feat_finder.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/vcf_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gvf_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gtf_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_data.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_sofa.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_exception.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/wiggle_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/rm_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/readfeat.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/phrap.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/microarray_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_data.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/track_data.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/getfeature.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/cigar.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/bed_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_util.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/acc_pattern.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/format_guess_ex.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/read_util.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o
/bin/rm -f libxobjread.a .libxobjread.a.stamp
ar cr libxobjread.a read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o message_listener.o line_error.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjread.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjread.a
/bin/ln -f .xobjread.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjread.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjreadex -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_scope.cpp.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_config.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/glimmer_reader.cpp.
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o
/bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp
ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjreadex.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjreadex.a
/bin/ln -f .xobjreadex.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjreadex.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -C app -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/app'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/app'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/test'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -C blast -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT gene_info_writer/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile
/usr/pkg/bin/gmake -C seqdb_reader -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:160:13: warning: unused function 's_SeqDB_FileNotFound' [-Wunused-function]
static void s_SeqDB_FileNotFound(const string & fname)
^
1 warning generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o
/bin/rm -f libseqdb.a .libseqdb.a.stamp
ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqdb.a
/bin/ln -f .seqdb.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqdb.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
/usr/pkg/bin/gmake -C demo -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:315:15: warning: private field 'm_MaxLength' is not used [-Wunused-private-field]
const int m_MaxLength;
^
1 warning generated.
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O seqdb_demo.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o seqdb_demo
strip seqdb_demo
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f seqdb_demo /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/seqdb_demo
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O seqdb_perf.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o seqdb_perf
strip seqdb_perf
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f seqdb_perf /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/seqdb_perf
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
/usr/pkg/bin/gmake -C seqdb_writer -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:113:22: warning: unused variable 'MAX_OFFSET_BITS' [-Wunused-variable]
static const int MAX_OFFSET_BITS = (sizeof m_Offset * 8) - 1;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:149:22: warning: unused variable 'MAX_OFFSET_BITS' [-Wunused-variable]
static const int MAX_OFFSET_BITS = (sizeof m_Offset * 8) - 1;
^
2 warnings generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o
/bin/rm -f libwritedb.a .libwritedb.a.stamp
ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libwritedb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libwritedb.a
/bin/ln -f .writedb.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.writedb.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test'
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test'
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
/usr/pkg/bin/gmake -C gene_info_reader -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o
/bin/rm -f libgene_info.a .libgene_info.a.stamp
ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgene_info.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgene_info.a
/bin/ln -f .gene_info.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gene_info.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
/usr/pkg/bin/gmake -C demo -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O gene_info_reader_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o gene_info_reader
strip gene_info_reader
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f gene_info_reader /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/gene_info_reader
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test'
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test'
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
/usr/pkg/bin/gmake -C gene_info_writer -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer'
/usr/pkg/bin/gmake -C services -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services/blast_services.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o
/bin/rm -f libblast_services.a .libblast_services.a.stamp
ar cr libblast_services.a blast_services.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblast_services.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblast_services.a
/bin/ln -f .blast_services.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blast_services.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test'
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test'
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services'
/usr/pkg/bin/gmake -C blastdb_format -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:396:24: warning: unused variable 'taxids_iter' [-Wunused-variable]
set<int>::iterator taxids_iter = taxids.begin();
^
1 warning generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o
/bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp
ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblastdb_format.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastdb_format.a
/bin/ln -f .blastdb_format.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastdb_format.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test'
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test'
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast'
/usr/pkg/bin/gmake -C lds2 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/lds2'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/lds2'
/usr/pkg/bin/gmake -C data_loaders -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lds2/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT patcher/Makefile
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT asn_cache/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT cdd/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile
/usr/pkg/bin/gmake -C genbank -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT pubseq/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT pubseq2/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j --jobserver-fds=5,6 export-headers
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j --jobserver-fds=5,6 export-headers
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o
/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp
/bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp
ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -o libncbi_xreader-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a
/bin/ln -f .ncbi_xreader.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so
/bin/ln -f .ncbi_xreader-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o
/bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp
/bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp
ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -o libncbi_xloader_genbank-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC gbloader.o gbload_util.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xloader_genbank.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a
/bin/ln -f .ncbi_xloader_genbank.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xloader_genbank-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so
/bin/ln -f .ncbi_xloader_genbank-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -C cache -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j --jobserver-fds=5,6 export-headers
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o
/bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp
/bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp
ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -o libncbi_xreader_cache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_cache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a
/bin/ln -f .ncbi_xreader_cache.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_cache-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so
/bin/ln -f .ncbi_xreader_cache-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
/usr/pkg/bin/gmake -C pubseq -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq'
/usr/pkg/bin/gmake -C id2 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j --jobserver-fds=5,6 export-headers
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o
/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp
/bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp
ar cr libncbi_xreader_id2.a reader_id2.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -o libncbi_xreader_id2-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_id2.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lm -lpthread
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_id2.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a
/bin/ln -f .ncbi_xreader_id2.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_id2-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so
/bin/ln -f .ncbi_xreader_id2-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
/usr/pkg/bin/gmake -C id1 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j --jobserver-fds=5,6 export-headers
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o
/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp
/bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp
ar cr libncbi_xreader_id1.a reader_id1.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -o libncbi_xreader_id1-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_id1.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -lpthread
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_id1.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a
/bin/ln -f .ncbi_xreader_id1.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_id1-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so
/bin/ln -f .ncbi_xreader_id1-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
/usr/pkg/bin/gmake -C pubseq2 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2'
/usr/pkg/bin/gmake -C gicache -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j --jobserver-fds=5,6 export-headers
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:268:17: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
LOG(SEV_ERROR, logmsg);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:268:17: note: treat the string as an argument to avoid this
LOG(SEV_ERROR, logmsg);
^
"%s",
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:273:7: warning: unused variable 'logmsg' [-Wunused-variable]
char logmsg[256];
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:363:18: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
LOG(SEV_ERROR, logmsg);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:363:18: note: treat the string as an argument to avoid this
LOG(SEV_ERROR, logmsg);
^
"%s",
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:424:17: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
LOG(SEV_ERROR, logmsg);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:424:17: note: treat the string as an argument to avoid this
LOG(SEV_ERROR, logmsg);
^
"%s",
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:525:18: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
LOG(SEV_ERROR, logmsg);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:525:18: note: treat the string as an argument to avoid this
LOG(SEV_ERROR, logmsg);
^
"%s",
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:618:9: warning: unused variable 'acc_len' [-Wunused-variable]
int acc_len;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:733:17: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
LOG(SEV_ERROR, logmsg);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:733:17: note: treat the string as an argument to avoid this
LOG(SEV_ERROR, logmsg);
^
"%s",
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:782:17: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
LOG(SEV_ERROR, logmsg);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:782:17: note: treat the string as an argument to avoid this
LOG(SEV_ERROR, logmsg);
^
"%s",
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:849:18: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
LOG(SEV_ERROR, logmsg);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:849:18: note: treat the string as an argument to avoid this
LOG(SEV_ERROR, logmsg);
^
"%s",
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:816:7: warning: unused variable 'meta' [-Wunused-variable]
char meta[512], stime[128];
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:816:18: warning: unused variable 'stime' [-Wunused-variable]
char meta[512], stime[128];
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:879:18: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
LOG(SEV_ERROR, logmsg);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:879:18: note: treat the string as an argument to avoid this
LOG(SEV_ERROR, logmsg);
^
"%s",
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:925:18: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
LOG(SEV_ERROR, logmsg);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:925:18: note: treat the string as an argument to avoid this
LOG(SEV_ERROR, logmsg);
^
"%s",
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:967:11: warning: unused variable 'gi_len' [-Wunused-variable]
int64_t gi_len = 0;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:1027:18: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
LOG(SEV_ERROR, logmsg);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:1027:18: note: treat the string as an argument to avoid this
LOG(SEV_ERROR, logmsg);
^
"%s",
15 warnings generated.
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o
/bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp
/bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp
ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -o libncbi_xreader_gicache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_gicache.o gicache.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_gicache.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_gicache-dll.so /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so
/bin/ln -f .ncbi_xreader_gicache-dll.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep
/bin/ln -f .ncbi_xreader_gicache.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -C lds2 -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2'
/usr/pkg/bin/gmake -C blastdb -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j --jobserver-fds=5,6 export-headers
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j --jobserver-fds=5,6 export-headers
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o
/bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp
ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xloader_blastdb.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a
/bin/ln -f .ncbi_xloader_blastdb.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o
/bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp
ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xloader_blastdb_rmt.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a
/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -C patcher -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher'
/usr/pkg/bin/gmake -C asn_cache -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache'
/usr/pkg/bin/gmake -C cdd -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders'
/usr/pkg/bin/gmake -C simple -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/simple/simple_om.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o
/bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp
ar cr libxobjsimple.a simple_om.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjsimple.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjsimple.a
/bin/ln -f .xobjsimple.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjsimple.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple'
/usr/pkg/bin/gmake -C alnmgr -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: '&&' within '||' [-Wlogical-op-parentheses]
match1->m_ChainScore == match2->m_ChainScore &&
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: note: place parentheses around the '&&' expression to silence this warning
match1->m_ChainScore == match2->m_ChainScore &&
^
(
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
(aln_seq1->m_StrandScore > 0 &&
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: note: place parentheses around the '&&' expression to silence this warning
(aln_seq1->m_StrandScore > 0 &&
^
(
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
aln_seq1->m_StrandScore < 0 &&
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: note: place parentheses around the '&&' expression to silence this warning
aln_seq1->m_StrandScore < 0 &&
^
(
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
aln_seq2->m_StrandScore > 0 &&
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: note: place parentheses around the '&&' expression to silence this warning
aln_seq2->m_StrandScore > 0 &&
^
(
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
aln_seq2->m_StrandScore < 0 &&
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: note: place parentheses around the '&&' expression to silence this warning
aln_seq2->m_StrandScore < 0 &&
^
(
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36:
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: '&&' within '||' [-Wlogical-op-parentheses]
seq1->m_SeqIdx == seq2->m_SeqIdx &&
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: note: place parentheses around the '&&' expression to silence this warning
seq1->m_SeqIdx == seq2->m_SeqIdx &&
^
(
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:37:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: '&&' within '||' [-Wlogical-op-parentheses]
seq1->m_SeqIdx == seq2->m_SeqIdx &&
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: note: place parentheses around the '&&' expression to silence this warning
seq1->m_SeqIdx == seq2->m_SeqIdx &&
^
(
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: '&&' within '||' [-Wlogical-op-parentheses]
seq1->m_ChainScore == seq2->m_ChainScore &&
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:84:51: note: place parentheses around the '&&' expression to silence this warning
seq1->m_ChainScore == seq2->m_ChainScore &&
^
(
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA ||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: note: place parentheses around the '&&' expression to silence this warning
if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA ||
^
( )
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA ||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: note: place parentheses around the '&&' expression to silence this warning
if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA ||
^
( )
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmix.cpp:38:
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: '&&' within '||' [-Wlogical-op-parentheses]
seq1->m_SeqIdx == seq2->m_SeqIdx &&
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: note: place parentheses around the '&&' expression to silence this warning
seq1->m_SeqIdx == seq2->m_SeqIdx &&
^
(
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: '&&' within '||' [-Wlogical-op-parentheses]
seq1->m_SeqIdx == seq2->m_SeqIdx &&
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: note: place parentheses around the '&&' expression to silence this warning
seq1->m_SeqIdx == seq2->m_SeqIdx &&
^
(
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (plus && prev_start_plus_len < start ||
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: note: place parentheses around the '&&' expression to silence this warning
if (plus && prev_start_plus_len < start ||
^
( )
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: warning: '&&' within '||' [-Wlogical-op-parentheses]
!plus && start_plus_len < (TSeqPos) prev_start) {
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: note: place parentheses around the '&&' expression to silence this warning
!plus && start_plus_len < (TSeqPos) prev_start) {
^
( )
5 warnings generated.
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: unused typedef 'TAlnRngColl' [-Wunused-local-typedef]
typedef CAlignRangeCollection<TAlnRng> TAlnRngColl;
^
2 warnings generated.
1 warning generated.
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (left_seg < 0 || seg > right_seg && right_seg > 0) {
~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: note: place parentheses around the '&&' expression to silence this warning
if (left_seg < 0 || seg > right_seg && right_seg > 0) {
^
( )
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (left_seg < 0 || seg > right_seg && right_seg > 0) {
~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: note: place parentheses around the '&&' expression to silence this warning
if (left_seg < 0 || seg > right_seg && right_seg > 0) {
^
( )
3 warnings generated.
2 warnings generated.
3 warnings generated.
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alntext.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmix.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alndiag.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o
/bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp
ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxalnmgr.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalnmgr.a
/bin/ln -f .xalnmgr.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalnmgr.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
/usr/pkg/bin/gmake -C demo -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
/usr/pkg/bin/gmake -C cddalignview -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cddalignview'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cddalignview'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/test'
/usr/pkg/bin/gmake -C manip -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/manip'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/manip'
/usr/pkg/bin/gmake -C cleanup -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j --jobserver-fds=5,6 all
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:183:7: warning: private field 'm_Dummy' is not used [-Wunused-private-field]
int m_Dummy;
^
1 warning generated.
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:684:7: warning: private field 'm_Dummy' is not used [-Wunused-private-field]
int m_Dummy;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:8276:10: warning: unused variable 'changed' [-Wunused-variable]
bool changed = false;
^
1 warning generated.
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o
/bin/rm -f libxcleanup.a .libxcleanup.a.stamp
ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxcleanup.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcleanup.a
/bin/ln -f .xcleanup.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcleanup.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup'
/usr/pkg/bin/gmake -C test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup/test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup/test'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup'
/usr/pkg/bin/gmake -C format -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format TMPL=xformat -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format TMPL=xformat -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp:367:16: warning: unused variable 'is_html' [-Wunused-variable]
const bool is_html = ctx.Config().DoHTML();
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp:1050:10: warning: unused variable 'bHtml' [-Wunused-variable]
bool bHtml = ctx.Config().DoHTML();
^
1 warning generated.
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp:1029:34: warning: unused variable 'format' [-Wunused-variable]
CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ?
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp:1798:13: warning: unused variable 'scope' [-Wunused-variable]
CScope* scope = &ctx.GetScope();
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp:759:13: warning: unused function 's_NsAreGaps' [-Wunused-function]
static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx)
^
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format'
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/source_item.cpp -o source_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/version_item.cpp -o version_item.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/context.cpp -o context.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp:258:10: warning: unused variable 'nearFeatsSuppress' [-Wunused-variable]
bool nearFeatsSuppress = false;
^
1 warning generated.
3 warnings generated.
++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o
/bin/rm -f libxformat.a .libxformat.a.stamp
ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxformat.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxformat.a
/bin/ln -f .xformat.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xformat.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format'
/usr/pkg/bin/gmake -C edit -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/protein_match/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/demo/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/unit_test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/protein_match/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/protein_match/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/unit_test/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/demo/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT protein_match/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/demo/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit TMPL=edit -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit TMPL=edit -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:44: warning: 'Find' is deprecated [-Wdeprecated-declarations]
size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:40: warning: 'Find' is deprecated [-Wdeprecated-declarations]
size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable]
int best_fit_size = -1;
^
2 warnings generated.
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:550:19: warning: 'AdjustFeaturePartialFlagForLocation' is deprecated [-Wdeprecated-declarations]
any_change |= AdjustFeaturePartialFlagForLocation(feat);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:1: note: 'AdjustFeaturePartialFlagForLocation' has been explicitly marked deprecated here
NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:773:38: warning: 'RetranslateCDS' is deprecated [-Wdeprecated-declarations]
if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) {
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:65:1: note: 'RetranslateCDS' has been explicitly marked deprecated here
NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:774:17: warning: 'AdjustForCDSPartials' is deprecated [-Wdeprecated-declarations]
AdjustForCDSPartials(*new_feat, scope.GetBioseqHandle(new_feat->GetLocation()).GetSeq_entry_Handle());
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:64:1: note: 'AdjustForCDSPartials' has been explicitly marked deprecated here
NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
1 warning generated.
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:172:38: warning: array subscript is of type 'char' [-Wchar-subscripts]
while (descr_insert_order[index] != 0)
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:39: warning: array subscript is of type 'char' [-Wchar-subscripts]
if (descr_insert_order[index] >= size())
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:175:46: warning: array subscript is of type 'char' [-Wchar-subscripts]
resize(descr_insert_order[index], kMax_Char);
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:176:38: warning: array subscript is of type 'char' [-Wchar-subscripts]
at(descr_insert_order[index]) = index;
^~~~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2083:22: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
if (cut_from < 0 || cut_to < 0 || cut_from >= nuc_len || cut_to >= nuc_len) {
~~~~~~~~ ^ ~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2083:36: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
if (cut_from < 0 || cut_to < 0 || cut_from >= nuc_len || cut_to >= nuc_len) {
~~~~~~ ^ ~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:17: warning: 5 enumeration values not handled in switch: 'eSeqSubMap', 'eSeqRef', 'eSeqEnd'... [-Wswitch]
switch (seqmap_ci.GetType()) {
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:409:19: warning: 'AdjustFeaturePartialFlagForLocation' is deprecated [-Wdeprecated-declarations]
any_change |= AdjustFeaturePartialFlagForLocation(new_prot);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:1: note: 'AdjustFeaturePartialFlagForLocation' has been explicitly marked deprecated here
NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp:224:34: warning: 'TranslateCdregion' is deprecated [-Wdeprecated-declarations]
CCdregion_translate::TranslateCdregion(data,
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:930:5: note: 'TranslateCdregion' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:21: warning: 'Find' is deprecated [-Wdeprecated-declarations]
pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:1958:5: note: 'Find' has been explicitly marked deprecated here
NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
1 warning generated.
3 warnings generated.
1 warning generated.
1 warning generated.
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/remote_updater.cpp:61:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/remote_updater.hpp:52:9: warning: private field 'm_enable_caching' is not used [-Wunused-private-field]
bool m_enable_caching;
^
1 warning generated.
7 warnings generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gap_trim.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/remote_updater.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/rna_edit.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gaps_edit.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/source_edit.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/mail_report.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/feattable_edit.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gb_block_field.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/text_desc_field.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/publication_edit.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/struc_comm_field.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/dblink_field.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/string_constraint.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/apply_object.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/field_handler.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gene_utils.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp -o capitalization_string.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o
/bin/rm -f libxobjedit.a .libxobjedit.a.stamp
ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o capitalization_string.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjedit.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjedit.a
/bin/ln -f .xobjedit.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjedit.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit'
/usr/pkg/bin/gmake -C protein_match -w -j --jobserver-fds=5,6 all_r || exit 5
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/usr/pkg/bin/gmake -C asniotest -w -j --jobserver-fds=5,6 all_r || exit 5
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/usr/pkg/bin/gmake -C seqmasks_io -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
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gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp.
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o
/bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp
ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqmasks_io.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a
/bin/ln -f .seqmasks_io.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test'
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/usr/pkg/bin/gmake -C eutils -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/eutils'
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/usr/pkg/bin/gmake -C align_format -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format TMPL=align_format -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format'
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/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format TMPL=align_format -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/taxFormat.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/aln_printer.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/vectorscreen.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/tabular.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/align_format_util.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/format_flags.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showdefline.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o
/bin/rm -f libalign_format.a .libalign_format.a.stamp
ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libalign_format.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libalign_format.a
/bin/ln -f .align_format.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.align_format.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format'
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gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test'
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test'
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/usr/pkg/bin/gmake -C snputil -w -j --jobserver-fds=5,6 all_r || exit 5
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/usr/pkg/bin/gmake -C variation -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/variation'
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/usr/pkg/bin/gmake -C writers -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/writers'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/writers'
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/usr/pkg/bin/gmake -C ctools -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/ctools'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/ctools'
/usr/pkg/bin/gmake -C sra -w -j --jobserver-fds=5,6 all_r || exit 5
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gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/sequence/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/align/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/structure/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/ms/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/gnomon/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/tree/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/phy_tree/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/seqqa/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/cobalt/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/text/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/volume_merge/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/primer/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/id_mapper/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/structure/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/align/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/ms/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/ms/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/gnomon/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/phy_tree/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/cobalt/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/text/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/sequence/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT structure/Makefile
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/seqqa/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/id_mapper/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT gnomon/Makefile
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/volume_merge/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/primer/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/tree/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT cobalt/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT align/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ms/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT phy_tree/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT sequence/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT text/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT seqqa/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT id_mapper/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT volume_merge/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT tree/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT primer/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/sequence/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/seqqa/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/structure/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/text/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/primer/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/ms/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/cobalt/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/gnomon/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/tree/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/align/Makefile
/usr/pkg/bin/gmake -C dustmask -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask/symdust.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o
/bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp
ar cr libxalgodustmask.a symdust.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxalgodustmask.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a
/bin/ln -f .xalgodustmask.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask'
/usr/pkg/bin/gmake -C winmask -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j --jobserver-fds=5,6 all
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:113:10: warning: private field 'ambig' is not used [-Wunused-private-field]
bool ambig;
^
1 warning generated.
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:31: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations]
string id_str = sequence::GetTitle( bsh );
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:288:1: note: 'GetTitle' has been explicitly marked deprecated here
NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_config.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_util.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o
/bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp
ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxalgowinmask.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a
/bin/ln -f .xalgowinmask.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask'
/usr/pkg/bin/gmake -C sequence -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/sequence'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/sequence'
/usr/pkg/bin/gmake -C blast -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT dbindex_search/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT gumbel_params/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT blast_sra_input/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile
/usr/pkg/bin/gmake -C composition_adjustment -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: function 's_CompoHeapIsValid' is not needed and will not be emitted [-Wunneeded-internal-declaration]
s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n)
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: unused function 's_AlignmentsAreSorted' [-Wunused-function]
s_AlignmentsAreSorted(BlastCompo_Alignment * alignments)
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: unused function 's_DistinctAlignmentsLength' [-Wunused-function]
s_DistinctAlignmentsLength(BlastCompo_Alignment * list)
^
1 warning generated.
2 warnings generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o
/bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp
ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libcomposition_adjustment.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a
/bin/ln -f .composition_adjustment.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
/usr/pkg/bin/gmake -C core -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core TMPL=blast -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core TMPL=blast -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_kappa.c:3409:11: warning: unused variable 'my_stderr' [-Wunused-variable]
FILE *my_stderr = stderr;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_stat.c:1194:23: warning: array subscript is of type 'char' [-Wchar-subscripts]
while( (*cp) && isspace(*cp) ) cp++;
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_stat.c:1201:27: warning: array subscript is of type 'char' [-Wchar-subscripts]
while( (*cp) && isspace(*cp) ) cp++;
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_stat.c:1236:12: warning: array subscript is of type 'char' [-Wchar-subscripts]
if ( isalpha(*cp) && !alphabet[0] ) {
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:49:44: note: expanded from macro 'isalpha'
#define isalpha(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_A))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_stat.c:1246:18: warning: array subscript is of type 'char' [-Wchar-subscripts]
}else if ( isalpha(*cp) ) {
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:49:44: note: expanded from macro 'isalpha'
#define isalpha(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_A))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_stat.c:1250:25: warning: array subscript is of type 'char' [-Wchar-subscripts]
while( (*cp) && isspace(*cp) ) cp++;
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_stat.c:1254:12: warning: array subscript is of type 'char' [-Wchar-subscripts]
if ( isdigit(*cp) || *cp == '-' ) {
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:51:44: note: expanded from macro 'isdigit'
#define isdigit(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_D))
^~~~
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core'
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_util.c -o blast_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/pattern.c -o pattern.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/1 warning generated.
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/phi_lookup.c:379:35: warning: array subscript is of type 'char' [-Wchar-subscripts]
pattern_out[index] = toupper(pattern_in[index]);
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:60:46: note: expanded from macro 'toupper'
#define toupper(c) ((int)((_toupper_tab_ + 1)[(c)]))
^~~~
6 warnings generated.
1 warning generated.
clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/split_query.c -o split_query.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/jumper.c -o jumper.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o
/bin/rm -f libblast.a .libblast.a.stamp
ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblast.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblast.a
/bin/ln -f .blast.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blast.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core'
/usr/pkg/bin/gmake -C dbindex -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:39: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations]
string idstr = objects::sequence::GetTitle( bsh );
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:288:1: note: 'GetTitle' has been explicitly marked deprecated here
NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
1 warning generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o
/bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp
ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxalgoblastdbindex.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a
/bin/ln -f .xalgoblastdbindex.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
/usr/pkg/bin/gmake -C makeindex -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O main.o mkindex_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o makembindex
strip makembindex
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f makembindex /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/makembindex
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
/usr/pkg/bin/gmake -C dbindex_search -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search'
/usr/pkg/bin/gmake -C api -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api TMPL=xblast -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api TMPL=xblast -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api'
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Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux.cpp.
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c
Updating dependency information for .core_spliced_hits.c.
Updating dependency information for .core_hspfilter_mapper.c.
Updating dependency information for .core_jumper.c.
Updating dependency information for .core_blast_hspstream_mt_utils.c.
Updating dependency information for .core_blast_traceback_mt_priv.c.
Updating dependency information for .core_index_ungapped.c.
Updating dependency information for .core_gencode_singleton.c.
Updating dependency information for .core_blast_dynarray.c.
Updating dependency information for .core_split_query.c.
Updating dependency information for .core_blast_tune.c.
Updating dependency information for .core_blast_program.c.
Updating dependency information for .core_blast_parameters.c.
Updating dependency information for .core_blast_sw.c.
Updating dependency information for .core_blast_posit.c.
Updating dependency information for .core_boost_erf.c.
Updating dependency information for .core_blast_query_info.c.
Updating dependency information for .core_phi_lookup.c.
Updating dependency information for .core_phi_gapalign.c.
Updating dependency information for .core_phi_extend.c.
Updating dependency information for .core_pattern.c.
Updating dependency information for .core_blast_encoding.c.
Updating dependency information for .core_ncbi_math.c.
Updating dependency information for .core_ncbi_std.c.
Updating dependency information for .core_matrix_freq_ratios.c.
Updating dependency information for .core_lookup_wrap.c.
Updating dependency information for .core_lookup_util.c.
Updating dependency information for .core_link_hsps.c.
Updating dependency information for .core_hspfilter_culling.c.
Updating dependency information for .core_hspfilter_besthit.c.
Updating dependency information for .core_hspfilter_collector.c.
Updating dependency information for .core_greedy_align.c.
Updating dependency information for .core_gapinfo.c.
Updating dependency information for .core_blast_util.c.
Updating dependency information for .core_blast_traceback.c.
Updating dependency information for .core_blast_stat.c.
Updating dependency information for .core_blast_setup.c.
Updating dependency information for .core_blast_seqsrc.c.
Updating dependency information for .core_blast_seg.c.
Updating dependency information for .core_blast_psi_priv.c.
Updating dependency information for .core_na_ungapped.c.
Updating dependency information for .core_blast_psi.c.
Updating dependency information for .core_blast_options.c.
Updating dependency information for .core_blast_message.c.
Updating dependency information for .core_blast_nascan.c.
Updating dependency information for .core_blast_nalookup.c.
Updating dependency information for .core_blast_aascan.c.
Updating dependency information for .core_blast_aalookup.c.
Updating dependency information for .core_blast_lookup.c.
Updating dependency information for .core_blast_kappa.c.
Updating dependency information for .core_blast_itree.c.
Updating dependency information for .core_blast_hspstream.c.
Updating dependency information for .core_blast_hits.c.
Updating dependency information for .core_blast_gapalign.c.
Updating dependency information for .core_blast_filter.c.
Updating dependency information for .core_blast_extend.c.
Updating dependency information for .core_blast_engine.c.
Updating dependency information for .core_blast_diagnostics.c.
Updating dependency information for .core_aa_ungapped.c.
rm .core_blast_nascan.c .core_blast_diagnostics.c .core_blast_sw.c .core_split_query.c .core_blast_query_info.c .core_blast_traceback_mt_priv.c .core_jumper.c .core_blast_engine.c .core_blast_util.c .core_blast_psi.c .core_blast_aascan.c .core_blast_filter.c .core_blast_dynarray.c .core_blast_posit.c .core_na_ungapped.c .core_blast_setup.c .core_blast_stat.c .core_blast_hits.c .core_matrix_freq_ratios.c .core_ncbi_std.c .core_boost_erf.c .core_blast_aalookup.c .core_link_hsps.c .core_phi_lookup.c .core_blast_message.c .core_blast_extend.c .core_blast_lookup.c .core_pattern.c .core_phi_gapalign.c .core_blast_itree.c .core_spliced_hits.c .core_blast_gapalign.c .core_blast_tune.c .core_blast_hspstream.c .core_blast_psi_priv.c .core_phi_extend.c .core_hspfilter_mapper.c .core_gencode_singleton.c .core_lookup_wrap.c .core_index_ungapped.c .core_blast_encoding.c .core_hspfilter_culling.c .core_blast_options.c .core_aa_ungapped.c .core_blast_seqsrc.c .core_blast_parameters.c .core_ncbi_math.c .core_greedy_align.c .core_blast_hspstream_mt_utils.c .core_hspfilter_besthit.c .core_gapinfo.c .core_hspfilter_collector.c .core_lookup_util.c .core_blast_traceback.c .core_blast_seg.c .core_blast_nalookup.c .core_blast_program.c .core_blast_kappa.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c
echo '#include "/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:20: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations]
return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:5: note: 'GetFilterString' has been explicitly marked deprecated here
NCBI_DEPRECATED char* GetFilterString() const;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:13: warning: 'SetFilterString' is deprecated [-Wdeprecated-declarations]
m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:173:5: note: 'SetFilterString' has been explicitly marked deprecated here
NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
2 warnings generated.
blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/version.cpp -o version.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-In file included from .core_blast_kappa.c:1:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3409:11: warning: unused variable 'my_stderr' [-Wunused-variable]
FILE *my_stderr = stderr;
^
1 warning generated.
In file included from .core_blast_stat.c:1:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1194:23: warning: array subscript is of type 'char' [-Wchar-subscripts]
while( (*cp) && isspace(*cp) ) cp++;
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
In file included from .core_blast_stat.c:1:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1201:27: warning: array subscript is of type 'char' [-Wchar-subscripts]
while( (*cp) && isspace(*cp) ) cp++;
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
In file included from .core_blast_stat.c:1:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1236:12: warning: array subscript is of type 'char' [-Wchar-subscripts]
if ( isalpha(*cp) && !alphabet[0] ) {
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:49:44: note: expanded from macro 'isalpha'
#define isalpha(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_A))
^~~~
In file included from .core_blast_stat.c:1:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1246:18: warning: array subscript is of type 'char' [-Wchar-subscripts]
}else if ( isalpha(*cp) ) {
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:49:44: note: expanded from macro 'isalpha'
#define isalpha(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_A))
^~~~
In file included from .core_blast_stat.c:1:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1250:25: warning: array subscript is of type 'char' [-Wchar-subscripts]
while( (*cp) && isspace(*cp) ) cp++;
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:56:44: note: expanded from macro 'isspace'
#define isspace(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_S))
^~~~
In file included from .core_blast_stat.c:1:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1254:12: warning: array subscript is of type 'char' [-Wchar-subscripts]
if ( isdigit(*cp) || *cp == '-' ) {
^~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:51:44: note: expanded from macro 'isdigit'
#define isdigit(c) ((int)((_ctype_tab_ + 1)[(c)] & _CTYPE_D))
^~~~
src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_na_ungapped.c -o .core_na_ungapped.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_setup.c -o .core_blast_setup.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_stat.c -o .core_blast_stat.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_traceback.c -o .core_blast_traceback.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_gapinfo.c -o .core_gapinfo.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_greedy_align.c -o .core_greedy_align.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_lookup_util.c -o .core_lookup_util.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_lookup_wrap.c -o .core_lookup_wrap.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-6 warnings generated.
In file included from .core_phi_lookup.c:1:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c:379:35: warning: array subscript is of type 'char' [-Wchar-subscripts]
pattern_out[index] = toupper(pattern_in[index]);
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/sys/ctype_inline.h:60:46: note: expanded from macro 'toupper'
#define toupper(c) ((int)((_toupper_tab_ + 1)[(c)]))
^~~~
1 warning generated.
blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o
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/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_parameters.c -o .core_blast_parameters.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_posit.c -o .core_blast_posit.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_program.c -o .core_blast_program.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_query_info.c -o .core_blast_query_info.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_tune.c -o .core_blast_tune.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_sw.c -o .core_blast_sw.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_dynarray.c -o .core_blast_dynarray.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_split_query.c -o .core_split_query.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_gencode_singleton.c -o .core_gencode_singleton.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_index_ungapped.c -o .core_index_ungapped.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_boost_erf.c -o .core_boost_erf.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_jumper.c -o .core_jumper.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_spliced_hits.c -o .core_spliced_hits.o
/bin/rm -f libxblast.a .libxblast.a.stamp
ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxblast.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxblast.a
/bin/ln -f .xblast.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xblast.dep
rm .core_split_query.c .core_blast_nascan.c .core_blast_diagnostics.c .core_phi_extend.c .core_hspfilter_collector.c .core_blast_engine.c .core_blast_dynarray.c .core_blast_setup.c .core_blast_aascan.c .core_blast_filter.c .core_blast_seg.c .core_hspfilter_culling.c .core_blast_stat.c .core_blast_hspstream.c .core_blast_itree.c .core_boost_erf.c .core_link_hsps.c .core_blast_psi.c .core_phi_gapalign.c .core_pattern.c .core_blast_traceback_mt_priv.c .core_blast_query_info.c .core_blast_psi_priv.c .core_blast_seqsrc.c .core_gencode_singleton.c .core_blast_kappa.c .core_blast_message.c .core_blast_options.c .core_blast_parameters.c .core_blast_aalookup.c .core_blast_hspstream_mt_utils.c .core_index_ungapped.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_nalookup.c .core_blast_program.c .core_greedy_align.c .core_blast_sw.c .core_lookup_util.c .core_jumper.c .core_na_ungapped.c .core_blast_posit.c .core_blast_gapalign.c .core_blast_hits.c .core_matrix_freq_ratios.c .core_blast_extend.c .core_blast_lookup.c .core_ncbi_math.c .core_blast_encoding.c .core_spliced_hits.c .core_hspfilter_mapper.c .core_lookup_wrap.c .core_aa_ungapped.c .core_hspfilter_besthit.c .core_gapinfo.c .core_phi_lookup.c .core_blast_util.c .core_blast_tune.c
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api'
/usr/pkg/bin/gmake -C proteinkmer -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:84:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma ivdep
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:91:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma ivdep
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:98:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma ivdep
^
3 warnings generated.
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:431:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma ivdep
^
1 warning generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o
/bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp
ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libproteinkmer.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libproteinkmer.a
/bin/ln -f .proteinkmer.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.proteinkmer.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[6]: *** No rule to make target '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
/usr/pkg/bin/gmake -C format -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j --jobserver-fds=5,6 all
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations]
m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:5: note: 'GetFilterString' has been explicitly marked deprecated here
NCBI_DEPRECATED char* GetFilterString() const;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations]
m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:5: note: 'GetFilterString' has been explicitly marked deprecated here
NCBI_DEPRECATED char* GetFilterString() const;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:51: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations]
auto_ptr<CObjectOStreamXml> xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false));
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here
NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut));
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimisc.hpp:1099:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR'
# define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:50: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations]
auto_ptr<CObjectOStreamXml> xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false));
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here
NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut));
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimisc.hpp:1099:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR'
# define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
1 warning generated.
1 warning generated.
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:49:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations]
m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:5: note: 'GetFilterString' has been explicitly marked deprecated here
NCBI_DEPRECATED char* GetFilterString() const;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
In file included from /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:51:
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations]
m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:5: note: 'GetFilterString' has been explicitly marked deprecated here
NCBI_DEPRECATED char* GetFilterString() const;
^
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h:826:40: note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
^
2 warnings generated.
2 warnings generated.
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/sam.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/build_archive.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o
/bin/rm -f libxblastformat.a .libxblastformat.a.stamp
ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxblastformat.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxblastformat.a
/bin/ln -f .xblastformat.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xblastformat.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format'
/usr/pkg/bin/gmake -C blastinput -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o
/bin/rm -f libblastinput.a .libblastinput.a.stamp
ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblastinput.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastinput.a
/bin/ln -f .blastinput.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastinput.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
/usr/pkg/bin/gmake -C unit_test -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test'
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test'
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test'
/usr/pkg/bin/gmake -C demo -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
/usr/pkg/bin/gmake -C blast_sra_input -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input'
/usr/pkg/bin/gmake -C igblast -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast/igblast.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o
/bin/rm -f libigblast.a .libigblast.a.stamp
ar cr libigblast.a igblast.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libigblast.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libigblast.a
/bin/ln -f .igblast.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.igblast.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
/usr/pkg/bin/gmake -C gumbel_params -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params'
/usr/pkg/bin/gmake -C unit_tests -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests'
/usr/pkg/bin/gmake -C blast_format -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format'
NOTE: Skipping project blast_format due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format'
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format'
/usr/pkg/bin/gmake -C blastdb -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb'
NOTE: Skipping project blastdb due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb'
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb'
/usr/pkg/bin/gmake -C seqdb_reader -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader'
NOTE: Skipping project seqdb_reader due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader'
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader'
/usr/pkg/bin/gmake -C api -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
NOTE: Skipping project api due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j --jobserver-fds=5,6 mark-as-disabled
gmake[7]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j --jobserver-fds=5,6 mark-as-disabled
gmake[7]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast'
/usr/pkg/bin/gmake -C segmask -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j --jobserver-fds=5,6 export-headers
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/segmask/segmask.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o
/bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp
ar cr libxalgosegmask.a segmask.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxalgosegmask.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgosegmask.a
/bin/ln -f .xalgosegmask.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgosegmask.dep
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask'
/usr/pkg/bin/gmake -C align -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/align'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/align'
/usr/pkg/bin/gmake -C structure -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/structure'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/structure'
/usr/pkg/bin/gmake -C ms -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/ms'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/ms'
/usr/pkg/bin/gmake -C gnomon -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/gnomon'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/gnomon'
/usr/pkg/bin/gmake -C tree -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/tree'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/tree'
/usr/pkg/bin/gmake -C phy_tree -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/phy_tree'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/phy_tree'
/usr/pkg/bin/gmake -C seqqa -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/seqqa'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/seqqa'
/usr/pkg/bin/gmake -C cobalt -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/cobalt'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/cobalt'
/usr/pkg/bin/gmake -C text -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/text'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/text'
/usr/pkg/bin/gmake -C volume_merge -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/volume_merge'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/volume_merge'
/usr/pkg/bin/gmake -C primer -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/primer'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/primer'
/usr/pkg/bin/gmake -C id_mapper -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/id_mapper'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/id_mapper'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo'
/usr/pkg/bin/gmake -C misc -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/clog/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grid_cgi/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlwrapp/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/eutils_client/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hydra_client/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/discrepancy/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlreaders/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hgvs/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/netstorage/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/jsonwrapp/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/biosample_util/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/data_loaders_util/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/lapackwrapp/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/pmcidconv_client/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grpc_integration/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/cgi_redirect/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grid_cgi/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hydra_client/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/eutils_client/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/clog/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlreaders/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hgvs/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/netstorage/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/discrepancy/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/data_loaders_util/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/lapackwrapp/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/pmcidconv_client/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grpc_integration/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grpc_integration/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/jsonwrapp/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/jsonwrapp/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/biosample_util/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT hydra_client/Makefile
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/cgi_redirect/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT eutils_client/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT grid_cgi/Makefile
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlwrapp/Makefile.in
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT clog/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT discrepancy/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT netstorage/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lapackwrapp/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT hgvs/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT jsonwrapp/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT data_loaders_util/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT xmlreaders/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT grpc_integration/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT pmcidconv_client/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT biosample_util/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT cgi_redirect/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT xmlwrapp/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grpc_integration/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hgvs/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/clog/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/netstorage/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile
/usr/pkg/bin/gmake -C third_party -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party'
/usr/pkg/bin/gmake -C third_party_static -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static'
NOTE: Skipping project third_party_static due to unmet requirements:
-DLL
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static'
gmake[4]: Nothing to be done for 'mark-as-disabled_r'.
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static'
/usr/pkg/bin/gmake -C clog -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/clog'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/clog'
/usr/pkg/bin/gmake -C grid_cgi -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grid_cgi'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grid_cgi'
/usr/pkg/bin/gmake -C xmlwrapp -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlwrapp'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlwrapp'
/usr/pkg/bin/gmake -C eutils_client -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/eutils_client'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/eutils_client'
/usr/pkg/bin/gmake -C hydra_client -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hydra_client'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hydra_client'
/usr/pkg/bin/gmake -C discrepancy -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/discrepancy'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/discrepancy'
/usr/pkg/bin/gmake -C xmlreaders -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlreaders'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlreaders'
/usr/pkg/bin/gmake -C hgvs -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hgvs'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hgvs'
/usr/pkg/bin/gmake -C netstorage -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/netstorage'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/netstorage'
/usr/pkg/bin/gmake -C jsonwrapp -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/jsonwrapp'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/jsonwrapp'
/usr/pkg/bin/gmake -C biosample_util -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/biosample_util'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/biosample_util'
/usr/pkg/bin/gmake -C data_loaders_util -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/data_loaders_util'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/data_loaders_util'
/usr/pkg/bin/gmake -C lapackwrapp -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/lapackwrapp'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/lapackwrapp'
/usr/pkg/bin/gmake -C pmcidconv_client -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client'
/usr/pkg/bin/gmake -C grpc_integration -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grpc_integration'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grpc_integration'
NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C cgi_redirect -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/cgi_redirect'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/cgi_redirect'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc'
/usr/pkg/bin/gmake -C gui -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/gui'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/gui'
/usr/pkg/bin/gmake -C app -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app'
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2asn/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2fasta/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2flat/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asnval/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn_cleanup/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/id1_fetch/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/convert_seq/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/nmer_repeats/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/objmgr/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/gi2taxid/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/netschedule/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/grid/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/netstorage/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/igblast/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/vecscreen/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/agpconvert/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2flat/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2fasta/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asnval/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn_cleanup/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn_cleanup/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/nmer_repeats/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/nmer_repeats/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/id1_fetch/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/id1_fetch/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/netstorage/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/netstorage/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/convert_seq/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/convert_seq/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/igblast/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/igblast/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/objmgr/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/objmgr/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/grid/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/grid/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/netschedule/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/netschedule/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/gi2taxid/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/gi2taxid/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/agpconvert/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/agpconvert/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2asn/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/id2_fetch/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/vecscreen/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/vecscreen/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/agp_validate/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/objextract/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/bdb_env_keeper/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/nw_aligner/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/speedtest/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/idmapper/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/formatguess/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/multireader/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/read_blast_result/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/splign/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/hfilter/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/annotwriter/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/compart/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/streamtest/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/lds2_indexer/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/bdb_env_keeper/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/bdb_env_keeper/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/agp_validate/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/agp_validate/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/id2_fetch/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/id2_fetch/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/nw_aligner/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/nw_aligner/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/speedtest/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/speedtest/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/multireader/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/multireader/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/read_blast_result/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/read_blast_result/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/splign/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/splign/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/annotwriter/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/annotwriter/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/idmapper/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/idmapper/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/objextract/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/objextract/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/formatguess/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/formatguess/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/discrepancy_report/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/compart/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/compart/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/biosample_chk/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/streamtest/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/streamtest/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/biosample_chk/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/biosample_chk/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/discrepancy_report/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/discrepancy_report/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/hfilter/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/hfilter/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/lds2_indexer/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/lds2_indexer/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/gap_stats/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/table2asn/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/srcchk/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/tableval/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/ncbi_encrypt/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/ssub_fork/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn_cache/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/magicblast/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/pub_report/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/prot_match/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/gff_deconcat/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/sub_fuse/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/split_cache/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/wig2table/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/netcache/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/tableval/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/tableval/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/magicblast/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/magicblast/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/gap_stats/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/gap_stats/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/table2asn/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/table2asn/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/srcchk/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/srcchk/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/rmblastn/Makefile.in`
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/ncbi_encrypt/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/ncbi_encrypt/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/prot_match/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/prot_match/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/ssub_fork/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/ssub_fork/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/split_cache/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/split_cache/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn_cache/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn_cache/Makefile.in
test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/gff_deconcat/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/gff_deconcat/Makefile.in
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test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/pub_report/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/pub_report/Makefile.in
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test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/netcache/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/netcache/Makefile.in
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test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/wig2table/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/wig2table/Makefile.in
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test -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/tls/Makefile.in || /bin/cp -p /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/tls/Makefile.in
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config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cache/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/split_cache/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT dblb/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/wig2table/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT tls/Makefile
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT idfetch/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netcache/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/rmblastn/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dblb/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tls/Makefile
config.status: creating /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idfetch/Makefile
/usr/pkg/bin/gmake -C asn2asn -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2asn'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2asn'
/usr/pkg/bin/gmake -C asn2fasta -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2fasta'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2fasta'
/usr/pkg/bin/gmake -C asn2flat -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2flat'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2flat'
/usr/pkg/bin/gmake -C asnval -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asnval'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asnval'
/usr/pkg/bin/gmake -C asn_cleanup -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cleanup'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cleanup'
/usr/pkg/bin/gmake -C id1_fetch -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id1_fetch'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id1_fetch'
/usr/pkg/bin/gmake -C blast -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/legacy_blast.pl /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/legacy_blast.pl /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/legacy_blast.pl
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast -w -j --jobserver-fds=5,6 all
gmake[6]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/update_blastdb.pl /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/update_blastdb.pl /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/update_blastdb.pl
gmake[6]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blast_app_util -w -j --jobserver-fds=5,6 export-headers
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blast_app_util -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_app_util.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o
/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp
ar cr libblast_app_util.a blast_app_util.o
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblast_app_util.a /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblast_app_util.a
/bin/ln -f .blast_app_util.dep /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blast_app_util.dep
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blastp -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastp_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastp_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastp
strip blastp
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f blastp /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastp
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blastn -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastn_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastn_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastn
strip blastn
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f blastn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastn
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blastx -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastx_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastx_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastx
strip blastx
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f blastx /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastx
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=tblastn -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastn_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O tblastn_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o tblastn
strip tblastn
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f tblastn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/tblastn
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=tblastx -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastx_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O tblastx_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o tblastx
strip tblastx
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f tblastx /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/tblastx
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=psiblast -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/psiblast_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O psiblast_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o psiblast
strip psiblast
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f psiblast /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/psiblast
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=rpsblast -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpsblast_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O rpsblast_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o rpsblast
strip rpsblast
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f rpsblast /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/rpsblast
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=rpstblastn -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpstblastn_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O rpstblastn_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o rpstblastn
strip rpstblastn
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f rpstblastn /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/rpstblastn
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blast_formatter -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_formatter.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blast_formatter.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blast_formatter
strip blast_formatter
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f blast_formatter /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blast_formatter
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=deltablast -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/deltablast_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O deltablast_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o deltablast
strip deltablast
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f deltablast /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/deltablast
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=seedtop -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/seedtop_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O seedtop_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o seedtop
strip seedtop
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f seedtop /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/seedtop
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -C convert_seq -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/convert_seq'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/convert_seq'
/usr/pkg/bin/gmake -C nmer_repeats -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nmer_repeats'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nmer_repeats'
/usr/pkg/bin/gmake -C objmgr -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objmgr'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objmgr'
/usr/pkg/bin/gmake -C gi2taxid -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gi2taxid'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gi2taxid'
/usr/pkg/bin/gmake -C netschedule -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netschedule'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netschedule'
/usr/pkg/bin/gmake -C grid -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/grid'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/grid'
/usr/pkg/bin/gmake -C netstorage -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netstorage'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netstorage'
/usr/pkg/bin/gmake -C igblast -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/igblast'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/igblast'
/usr/pkg/bin/gmake -C winmasker -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker'
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker TMPL=winmasker -w -j --jobserver-fds=5,6 all
/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:43:20: warning: unused function 'iupacna_to_blastna' [-Wunused-function]
static inline char iupacna_to_blastna( char c )
^
1 warning generated.
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_app.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/main.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/main.cpp -o main.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o windowmasker
strip windowmasker
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f windowmasker /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/windowmasker
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker'
/usr/pkg/bin/gmake -C dustmasker -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker TMPL=dustmasker -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/main.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/main.cpp -o main.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O main.o dust_mask_app.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o dustmasker
strip dustmasker
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f dustmasker /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/dustmasker
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker'
/usr/pkg/bin/gmake -C segmasker -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/segmasker TMPL=segmasker -w -j --jobserver-fds=5,6 all
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/segmasker/segmasker.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O segmasker.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o segmasker
strip segmasker
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f segmasker /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/segmasker
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker'
/usr/pkg/bin/gmake -C blastdb -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
gmake[4]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcmd.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastdbcmd.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastdbcmd
strip blastdbcmd
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f blastdbcmd /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdbcmd
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=makeblastdb -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeblastdb.cpp.
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/masked_range_set.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O makeblastdb.o masked_range_set.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o makeblastdb
strip makeblastdb
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f makeblastdb /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/makeblastdb
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastdb_aliastool.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastdb_aliastool
strip blastdb_aliastool
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f blastdb_aliastool /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdb_aliastool
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcheck.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastdbcheck.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastdbcheck
strip blastdbcheck
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f blastdbcheck /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdbcheck
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/convert2blastmask.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O convert2blastmask.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o convert2blastmask
strip convert2blastmask
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f convert2blastmask /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/convert2blastmask
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdbcp -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcp.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastdbcp.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastdbcp
strip blastdbcp
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f blastdbcp /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdbcp
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
/usr/pkg/bin/gmake -f /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -w -j --jobserver-fds=5,6 all
gmake[5]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
Updating dependency information for /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeprofiledb.cpp.
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -I/usr/include -I/usr/pkg/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o
/data/scratch/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O makeprofiledb.o -Wl,-rpath-link,/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o makeprofiledb
strip makeprofiledb
/bin/sh /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin
/bin/ln -f makeprofiledb /data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/makeprofiledb
gmake[5]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
gmake[4]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb'
/usr/pkg/bin/gmake -C vecscreen -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/vecscreen'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/vecscreen'
/usr/pkg/bin/gmake -C agpconvert -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agpconvert'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agpconvert'
/usr/pkg/bin/gmake -C id2_fetch -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id2_fetch'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id2_fetch'
/usr/pkg/bin/gmake -C agp_validate -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agp_validate'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agp_validate'
/usr/pkg/bin/gmake -C objextract -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objextract'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objextract'
/usr/pkg/bin/gmake -C bdb_env_keeper -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper'
/usr/pkg/bin/gmake -C nw_aligner -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nw_aligner'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nw_aligner'
/usr/pkg/bin/gmake -C speedtest -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/speedtest'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/speedtest'
/usr/pkg/bin/gmake -C idmapper -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idmapper'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idmapper'
/usr/pkg/bin/gmake -C formatguess -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/formatguess'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/formatguess'
/usr/pkg/bin/gmake -C multireader -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/multireader'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/multireader'
/usr/pkg/bin/gmake -C read_blast_result -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/read_blast_result'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/read_blast_result'
/usr/pkg/bin/gmake -C splign -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/splign'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/splign'
/usr/pkg/bin/gmake -C hfilter -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/hfilter'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/hfilter'
/usr/pkg/bin/gmake -C annotwriter -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/annotwriter'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/annotwriter'
/usr/pkg/bin/gmake -C compart -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/compart'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/compart'
/usr/pkg/bin/gmake -C streamtest -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/streamtest'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/streamtest'
/usr/pkg/bin/gmake -C lds2_indexer -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/lds2_indexer'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/lds2_indexer'
/usr/pkg/bin/gmake -C discrepancy_report -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/discrepancy_report'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/discrepancy_report'
/usr/pkg/bin/gmake -C biosample_chk -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/biosample_chk'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/biosample_chk'
/usr/pkg/bin/gmake -C gap_stats -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gap_stats'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gap_stats'
/usr/pkg/bin/gmake -C table2asn -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/table2asn'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/table2asn'
/usr/pkg/bin/gmake -C srcchk -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/srcchk'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/srcchk'
/usr/pkg/bin/gmake -C tableval -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tableval'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tableval'
/usr/pkg/bin/gmake -C ncbi_encrypt -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt'
/usr/pkg/bin/gmake -C ssub_fork -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ssub_fork'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ssub_fork'
/usr/pkg/bin/gmake -C asn_cache -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cache'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cache'
/usr/pkg/bin/gmake -C magicblast -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/magicblast'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/magicblast'
/usr/pkg/bin/gmake -C pub_report -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/pub_report'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/pub_report'
/usr/pkg/bin/gmake -C prot_match -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/prot_match'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/prot_match'
/usr/pkg/bin/gmake -C gff_deconcat -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gff_deconcat'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gff_deconcat'
/usr/pkg/bin/gmake -C sub_fuse -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/sub_fuse'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/sub_fuse'
NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C split_cache -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/split_cache'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/split_cache'
NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C wig2table -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/wig2table'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/wig2table'
NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C netcache -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netcache'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netcache'
NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C rmblastn -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/rmblastn'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/rmblastn'
NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C dblb -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dblb'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dblb'
NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C tls -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tls'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tls'
NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C idfetch -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[3]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idfetch'
gmake[3]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idfetch'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app'
/usr/pkg/bin/gmake -C sample -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sample'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sample'
/usr/pkg/bin/gmake -C internal -w -j --jobserver-fds=5,6 all_r || exit 5
gmake[2]: Entering directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/internal'
gmake[2]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/internal'
gmake[1]: Leaving directory '/data/scratch/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build'