=> Bootstrap dependency digest>=20010302: found digest-20160304
WARNING: [license.mk] Every package should define a LICENSE.
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
=> Checksum SHA1 OK for GabeditSrc248.tar.gz
=> Checksum RMD160 OK for GabeditSrc248.tar.gz
=> Checksum SHA512 OK for GabeditSrc248.tar.gz
===> Installing dependencies for gabedit-2.4.8nb4
=> Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.54.3
=> Tool dependency gmake>=3.81: found gmake-4.1nb3
=> Tool dependency pkgconf-[0-9]*: found pkgconf-1.4.1nb1
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency xorgproto>=2018.1: found xorgproto-2018.4
=> Build dependency xcb-proto>=1.4: found xcb-proto-1.13
=> Build dependency cwrappers>=20150314: found cwrappers-20171108
=> Full dependency gtk2+>=2.24.32nb2: found gtk2+-2.24.32nb2
=> Full dependency gtkglext>=1.2.0nb34: found gtkglext-1.2.0nb34
===> Overriding tools for gabedit-2.4.8nb4
===> Extracting for gabedit-2.4.8nb4
===> Patching for gabedit-2.4.8nb4
=> Applying pkgsrc patches for gabedit-2.4.8nb4
=> Verifying /data/pkgsrc/biology/gabedit/patches/patch-src_Common_Gabedit.c
=> Applying pkgsrc patch /data/pkgsrc/biology/gabedit/patches/patch-src_Common_Gabedit.c
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_Common_Gabedit.c,v 1.1.1.1 2015/07/22 19:05:10 asau Exp $
|
|--- src/Common/Gabedit.c.orig	2013-10-30 12:46:50.000000000 +0000
|+++ src/Common/Gabedit.c
--------------------------
Patching file src/Common/Gabedit.c using Plan A...
Hunk #1 succeeded at 26.
done
===> Creating toolchain wrappers for gabedit-2.4.8nb4
===> Configuring for gabedit-2.4.8nb4
=> Generating pkg-config file for builtin expat package.
=> Checking for portability problems in extracted files
WARNING: [check-portability.awk] => Found $RANDOM:
WARNING: [check-portability.awk] utils/Gaussian/SGE/submitG03: export GAUSS_SCRDIR=/scratch/$LOGNAME/$RANDOM

Explanation:
===========================================================================
The variable $RANDOM is not required for a POSIX-conforming shell, and
many implementations of /bin/sh do not support it. It should therefore
not be used in shell programs that are meant to be portable across a
large number of POSIX-like systems.
===========================================================================

cd /data/scratch/biology/gabedit/work/GabeditSrc248 && cp platforms/CONFIG.unix CONFIG