=> Bootstrap dependency digest>=20010302: found digest-20160304
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
===> Installing for R-RandomFields-2.0.66
=> Generating pre-install file lists
=> Creating installation directories
/usr/bin/env R_LIBS= DESTDIR=/data/scratch/math/R-RandomFields/work/.destdir USETOOLS=no CC=clang CFLAGS=-O2\ -I/usr/pkg/include\ -I/usr/include CPPFLAGS=-I/usr/pkg/include\ -I/usr/include CXX=clang++ CXXFLAGS=-O2\ -I/usr/pkg/include\ -I/usr/include COMPILER_RPATH_FLAG=-Wl,-R F77=g95 FC=g95 FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib\ -L/usr/lib\ -Wl,-R/usr/lib LINKER_RPATH_FLAG=-R PATH=/data/scratch/math/R-RandomFields/work/.cwrapper/bin:/data/scratch/math/R-RandomFields/work/.buildlink/bin:/data/scratch/math/R-RandomFields/work/.g95/bin:/data/scratch/math/R-RandomFields/work/.tools/bin:/usr/pkg/bin:/usr/bin:/bin:/usr/pkg/bin:/usr/local/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc HOME=/data/scratch/math/R-RandomFields/work/.home CWRAPPERS_CONFIG_DIR=/data/scratch/math/R-RandomFields/work/.cwrapper/config CPP=clang-cpp LOCALBASE=/usr/pkg X11BASE=/usr/pkg PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ pbulkXXX\ -g\ users\ -m\ 644 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ pbulkXXX\ -g\ users\ -m\ 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ pbulkXXX\ -g\ users\ -m\ 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ pbulkXXX\ -g\ users\ -m\ 664 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 775 INSTALL_INFO= MAKEINFO=/data/scratch/math/R-RandomFields/work/.tools/bin/makeinfo FLEX= BISON= PKG_CONFIG= PKG_CONFIG_LIBDIR=/data/scratch/math/R-RandomFields/work/.buildlink/lib/pkgconfig:/data/scratch/math/R-RandomFields/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/data/scratch/math/R-RandomFields/work/.pkg-config.log PKG_CONFIG_PATH= CWRAPPERS_CONFIG_DIR=/data/scratch/math/R-RandomFields/work/.cwrapper/config /usr/pkg/bin/R CMD INSTALL -l /data/scratch/math/R-RandomFields/work/.destdir/usr/pkg/lib/R/library /data/scratch/math/R-RandomFields/work/RandomFields
* installing *source* package 'RandomFields' ...
files 'src/MLE.cc', 'src/getNset.cc', 'src/userinterfaces.cc' have the wrong MD5 checksums
checking for gcc... clang
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ANSI C... none needed
checking how to run the C preprocessor... clang-cpp
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
configure: creating ./config.status
config.status: creating src/includeMarkov.h
config.status: creating src/Makevars
#ifndef RFMarkov_H
/*
if you like to include simulation of Markov Gaussian models,
see help("RFMethods")
*/
// #define INCLUDEMARKOV 1
#endif
## modify if necessary
#PKG_CXXFLAGS = -O2 -Wall -pedantic -g
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
# -L/usr/local/lib -lGMRFLib -lGMRFLib-geo \
# -L/usr/lib -lgsl -lgslcblas -lz -lblas \
# -L/home/schlather/local/lib -ltaucs -lmetis -llapack \
** libs
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c Average.cc -o Average.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c D.H.cc -o D.H.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c Gneiting.cc -o Gneiting.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c InternalCov.cc -o InternalCov.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c KeyInfo.cc -o KeyInfo.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c MLE.cc -o MLE.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c MPP.cc -o MPP.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c MPPFcts.cc -o MPPFcts.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c Primitive.cc -o Primitive.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c Xempvario.cc -o Xempvario.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c addownfctns.cc -o addownfctns.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c auxiliary.cc -o auxiliary.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c avltr_modified.cc -o avltr_modified.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c circulant.cc -o circulant.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c direct.cc -o direct.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c empvario.cc -o empvario.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c extremes.cc -o extremes.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c fft.cc -o fft.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c getNset.cc -o getNset.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c hyperplan.cc -o hyperplan.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c initNerror.cc -o initNerror.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c kriging.cc -o kriging.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c markov.cc -o markov.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c metropolis.cc -o metropolis.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c nugget.cc -o nugget.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c operator.cc -o operator.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c sequential.cc -o sequential.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c simu.cc -o simu.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c spatialMA.cc -o spatialMA.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c spectral.cc -o spectral.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c tbm.cc -o tbm.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c userinterfaces.cc -o userinterfaces.o
clang++ -I/usr/pkg/lib/R/include -DNDEBUG -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -fpic -O2 -pthread -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/libdrm -I/usr/include/krb5 -c win_linux_aux.cc -o win_linux_aux.o
clang++ -shared -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -pthread -o RandomFields.so Average.o D.H.o Gneiting.o InternalCov.o KeyInfo.o MLE.o MPP.o MPPFcts.o Primitive.o Xempvario.o addownfctns.o auxiliary.o avltr_modified.o circulant.o direct.o empvario.o extremes.o fft.o getNset.o hyperplan.o initNerror.o kriging.o markov.o metropolis.o nugget.o operator.o sequential.o simu.o spatialMA.o spectral.o tbm.o userinterfaces.o win_linux_aux.o -llapack -lblas -L/usr/pkg/lib/gcc-lib/x86_64--netbsd/4.1.2 -L/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -lf95 -lm -Wl,-R/usr/pkg/lib/gcc-lib/x86_64--netbsd/4.1.2 -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -lR
/usr/bin/ld: cannot find -llapack
clang: error: linker command failed with exit code 1 (use -v to see invocation)
*** Error code 1
Stop.
make: stopped in /data/scratch/math/R-RandomFields/work/RandomFields/src
ERROR: compilation failed for package 'RandomFields'
* removing '/data/scratch/math/R-RandomFields/work/.destdir/usr/pkg/lib/R/library/RandomFields'
*** Error code 1
Stop.
make[1]: stopped in /data/pkgsrc/math/R-RandomFields
*** Error code 1
Stop.
make: stopped in /data/pkgsrc/math/R-RandomFields