=> Bootstrap dependency digest>=20010302: found digest-20160304
WARNING: [license.mk] Every package should define a LICENSE.
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
=> Checksum SHA1 OK for mpich-3.2.tar.gz
=> Checksum RMD160 OK for mpich-3.2.tar.gz
=> Checksum SHA512 OK for mpich-3.2.tar.gz
===> Installing dependencies for mpich-3.2
==========================================================================
The supported build options for mpich are:

	debug f90

You can select which build options to use by setting PKG_DEFAULT_OPTIONS
or the following variable.  Its current value is shown:

	PKG_OPTIONS.mpich (not defined)

==========================================================================
=> Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.6
=> Tool dependency checkperms>=1.1: found checkperms-1.11nb1
=> Build dependency cwrappers>=20150314: found cwrappers-20170112
=> Full dependency bash-[0-9]*: found bash-4.4.012
=> Full dependency perl>=5.0: found perl-5.24.1nb1
=> Full dependency hwloc>=1.4: found hwloc-1.11.7
=> Full dependency openpa>=1.0.1: found openpa-1.0.4
===> Overriding tools for mpich-3.2
===> Extracting for mpich-3.2
===> Patching for mpich-3.2
=> Applying pkgsrc patches for mpich-3.2
=> Verifying /data/pkgsrc/parallel/mpi-ch/patches/patch-Makefile.in
=> Applying pkgsrc patch /data/pkgsrc/parallel/mpi-ch/patches/patch-Makefile.in
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-Makefile.in,v 1.3 2017/04/29 18:18:52 adam Exp $
|
|Link mpiexec.gforker also against mpllib.
|Do not create libopa symlink; it conflicts with parallel/openpa/PLIST.
|
|--- Makefile.in.orig	2015-11-12 04:08:10.000000000 +0000
|+++ Makefile.in
--------------------------
Patching file Makefile.in using Plan A...
Hunk #1 succeeded at 10242.
Hunk #2 succeeded at 39784.
done
=> Verifying /data/pkgsrc/parallel/mpi-ch/patches/patch-configure
=> Applying pkgsrc patch /data/pkgsrc/parallel/mpi-ch/patches/patch-configure
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-configure,v 1.2 2017/04/29 18:18:52 adam Exp $
|
|Portability fix.
|Make it use weak symbols with Clang.
|
|--- configure.orig	2015-11-12 04:08:11.000000000 +0000
|+++ configure
--------------------------
Patching file configure using Plan A...
Hunk #1 succeeded at 26437.
Hunk #2 succeeded at 29322.
done
=> Verifying /data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpi_romio_configure
=> Applying pkgsrc patch /data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpi_romio_configure
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_mpi_romio_configure,v 1.1 2017/04/29 18:18:52 adam Exp $
|
|Portability fix.
|
|--- src/mpi/romio/configure.orig	2017-04-28 20:33:04.000000000 +0000
|+++ src/mpi/romio/configure
--------------------------
Patching file src/mpi/romio/configure using Plan A...
Hunk #1 succeeded at 22929.
done
=> Verifying /data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h
=> Applying pkgsrc patch /data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h,v 1.2 2017/04/29 18:18:52 adam Exp $
|
|Use pthread_mutexattr_setpshared() only when available.
|
|--- src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h.orig	2015-11-10 02:39:01.000000000 +0000
|+++ src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h
--------------------------
Patching file src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h using Plan A...
Hunk #1 succeeded at 106.
Hunk #2 succeeded at 125.
done
=> Verifying /data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c
=> Applying pkgsrc patch /data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c,v 1.1 2017/04/29 18:18:52 adam Exp $
|
|Use pthread_mutexattr_setpshared() only when available.
|
|--- src/mpid/ch3/channels/nemesis/src/ch3_init.c.orig	2017-04-29 16:30:18.534262462 +0000
|+++ src/mpid/ch3/channels/nemesis/src/ch3_init.c
--------------------------
Patching file src/mpid/ch3/channels/nemesis/src/ch3_init.c using Plan A...
Hunk #1 succeeded at 52.
Hunk #2 succeeded at 64.
done
=> Verifying /data/pkgsrc/parallel/mpi-ch/patches/patch-src_pm_hydra_configure
=> Applying pkgsrc patch /data/pkgsrc/parallel/mpi-ch/patches/patch-src_pm_hydra_configure
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_pm_hydra_configure,v 1.3 2017/04/29 18:18:52 adam Exp $
|
|Last newline is not needed.
|
|--- src/pm/hydra/configure.orig	2012-12-20 21:28:12.000000000 +0100
|+++ src/pm/hydra/configure	2013-01-24 15:36:08.260189221 +0100
--------------------------
Patching file src/pm/hydra/configure using Plan A...
Hunk #1 succeeded at 14572 (offset 199 lines).
done
===> Creating toolchain wrappers for mpich-3.2
===> Configuring for mpich-3.2
=> Modifying GNU configure scripts to avoid --recheck
=> Replacing config-guess with pkgsrc versions
=> Replacing config-sub with pkgsrc versions
=> Replacing install-sh with pkgsrc version
=> Checking for portability problems in extracted files
Configuring MPICH version 3.2 with  '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-fortran=no' '--prefix=/usr/pkg' '--build=x86_64--netbsd' '--host=x86_64--netbsd' '--mandir=/usr/pkg/man' 'build_alias=x86_64--netbsd' 'host_alias=x86_64--netbsd' 'CC=clang' 'CFLAGS=-O2 -I/usr/pkg/include -I/usr/include' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include' 'CXX=clang++' 'CXXFLAGS=-O2 -I/usr/pkg/include -I/usr/include' 'FC=g77' 'F77=g77' 'FFLAGS=-O'
Running on system: NetBSD e5.bec.de 7.99.71 NetBSD 7.99.71 (GENERIC) #0: Sun May  7 03:12:39 CEST 2017  joerg@britannica.bec.de:/home/joerg/work/NetBSD/clean/obj/amd64/sys/arch/amd64/compile/GENERIC amd64
checking for x86_64--netbsd-icc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ISO C89... none needed
checking whether clang understands -c and -o together... yes
checking how to run the C preprocessor... clang -E
checking for a BSD-compatible install... /usr/bin/install -c -o pbulkXXX -g users
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... confdb/install-sh -c -d
checking for gawk... /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of clang... gcc3
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for x86_64--netbsd-ar... no
checking for x86_64--netbsd-lib... no
checking for x86_64--netbsd-link... no
checking for ar... ar
checking the archiver (ar) interface... ar
checking build system type... x86_64--netbsd
checking host system type... x86_64--netbsd
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... /usr/bin/grep -F
checking for ld used by clang... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking how to convert x86_64--netbsd file names to x86_64--netbsd format... func_convert_file_noop
checking how to convert x86_64--netbsd file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for x86_64--netbsd-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... match_pattern /lib[^/]+(\.so|_pic\.a)$
checking for x86_64--netbsd-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64--netbsd-ar... ar
checking for archiver @FILE support... @
checking for x86_64--netbsd-strip... no
checking for strip... strip
checking for x86_64--netbsd-ranlib... no
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from clang object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64--netbsd-mt... no
checking for mt... mt
checking if mt is a manifest tool... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
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checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if clang supports -fno-rtti -fno-exceptions... yes
checking for clang option to produce PIC... -fPIC -DPIC
checking if clang PIC flag -fPIC -DPIC works... yes
checking if clang static flag -static works... yes
checking if clang supports -c -o file.o... rm: conftest*: No such file or directory
yes
checking if clang supports -c -o file.o... (cached) yes
checking whether the clang linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... rm: conftest*: No such file or directory
no
checking dynamic linker characteristics... NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking dependency style of clang++... gcc3
checking how to run the C++ preprocessor... clang++ -E
checking for ld used by clang++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the clang++ linker (/usr/bin/ld) supports shared libraries... yes
checking for clang++ option to produce PIC... -fPIC -DPIC
checking if clang++ PIC flag -fPIC -DPIC works... yes
checking if clang++ static flag -static works... yes
checking if clang++ supports -c -o file.o... rm: conftest*: No such file or directory
yes
checking if clang++ supports -c -o file.o... (cached) yes
checking whether the clang++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
checking for x86_64--netbsd-ifort... g77
checking whether we are using the GNU Fortran compiler... no
checking whether g77 accepts -g... no
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
libtool.m4: error: problem compiling FC test program
checking for g77 option to produce PIC... 
checking if g77 static flag  works... no
checking if g77 supports -c -o file.o... rm: conftest*: No such file or directory
no
checking if g77 supports -c -o file.o... (cached) no
checking whether the g77 linker (/usr/bin/ld) supports shared libraries... PKGSRC-WARNING: Something is trying to run the fortran compiler,
PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile.
yes
checking dynamic linker characteristics... PKGSRC-WARNING: Something is trying to run the fortran compiler,
PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile.
NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
checking for x86_64--netbsd-ifort... g77
checking whether we are using the GNU Fortran 77 compiler... no
checking whether g77 accepts -g... no
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g77 option to produce PIC... 
checking if g77 static flag  works... no
checking if g77 supports -c -o file.o... rm: conftest*: No such file or directory
no
checking if g77 supports -c -o file.o... (cached) no
checking whether the g77 linker (/usr/bin/ld) supports shared libraries... PKGSRC-WARNING: Something is trying to run the fortran compiler,
PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile.
yes
checking dynamic linker characteristics... PKGSRC-WARNING: Something is trying to run the fortran compiler,
PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile.
NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
checking hcoll/api/hcoll_api.h usability... no
checking hcoll/api/hcoll_api.h presence... no
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checking for hcoll_init in -lhcoll... no
configure: RUNNING PREREQ FOR ch3:nemesis
configure: ===== configuring src/mpl =====
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' --disable-versioning '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-fortran=no' '--build=x86_64--netbsd' '--host=x86_64--netbsd' '--mandir=/usr/pkg/man' 'build_alias=x86_64--netbsd' 'host_alias=x86_64--netbsd' 'CC=clang' 'CFLAGS=-O2 -I/usr/pkg/include -I/usr/include  ' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include ' 'CXX=clang++' 'CXXFLAGS=-O2 -I/usr/pkg/include -I/usr/include ' 'FC=g77' 'F77=g77' 'FFLAGS=-O ' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c -o pbulkXXX -g users
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... confdb/install-sh -c -d
checking for gawk... /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking for x86_64--netbsd-icc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ISO C89... none needed
checking whether clang understands -c and -o together... yes
checking dependency style of clang... gcc3
checking for x86_64--netbsd-ar... ar
checking the archiver (ar) interface... ar
checking build system type... x86_64--netbsd
checking host system type... x86_64--netbsd
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... /usr/bin/grep -F
checking for ld used by clang... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking how to convert x86_64--netbsd file names to x86_64--netbsd format... func_convert_file_noop
checking how to convert x86_64--netbsd file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for x86_64--netbsd-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... match_pattern /lib[^/]+(\.so|_pic\.a)$
checking for x86_64--netbsd-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64--netbsd-ar... (cached) ar
checking for archiver @FILE support... @
checking for x86_64--netbsd-strip... no
checking for strip... strip
checking for x86_64--netbsd-ranlib... ranlib
checking command to parse /usr/bin/nm -B output from clang object... ok
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checking how to truncate binary pipes... /bin/dd bs=4096 count=1
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checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... clang -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
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checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if clang supports -fno-rtti -fno-exceptions... yes
checking for clang option to produce PIC... -fPIC -DPIC
checking if clang PIC flag -fPIC -DPIC works... yes
checking if clang static flag -static works... yes
checking if clang supports -c -o file.o... rm: conftest*: No such file or directory
yes
checking if clang supports -c -o file.o... (cached) yes
checking whether the clang linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... rm: conftest*: No such file or directory
no
checking dynamic linker characteristics... NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for variable argument list macro functionality... yes
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checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating include/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
rm: libtoolT: No such file or directory
config.status: executing include/mplconfig.h commands
config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines
configure: ===== done with src/mpl configure =====
configure: sourcing src/mpl/localdefs
sourcing /data/scratch/parallel/mpi-ch/work/mpich-3.2/src/pm/hydra/mpichprereq
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking whether C compiler accepts option -O2... yes
checking whether C compiler option -O2 works with an invalid prototype program... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute__ ((weak_import)) allowed... yes
checking whether __attribute__((weak,alias(...))) allowed... yes
checking for multiple weak symbol support... 
checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf)
checking whether TRUE has been defined... no
checking whether the C++ compiler clang++ can build an executable... yes
checking whether C++ compiler works with string... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking for GNU g++ version... 4 . 2
checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf)
checking whether C++ compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for perl... /usr/pkg/bin/perl
checking for ar... (cached) ar
checking for ranlib... ranlib
checking for killall... no
checking whether install works... yes
checking whether mkdir -p works... yes
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for bash... /usr/pkg/bin/bash
checking whether /usr/pkg/bin/bash supports arrays... yes
checking for doctext... false
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if C compiler supports __builtin_expect... yes
checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... yes
checking whether clang supports __func__... yes
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... eight
checking for max C struct floating point alignment... sixteen
checking for max C struct alignment of structs with doubles... eight
checking for max C struct floating point alignment with long doubles... sixteen
configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs.  MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types.
checking if alignment of structs with doubles is based on position... no
checking if alignment of structs with long long ints is based on position... no
checking if double alignment breaks rules, find actual alignment... no
checking for alignment restrictions on pointers... int or better
checking size of char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 8
checking size of unsigned long... 8
checking size of long long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 16
checking size of void *... 8
checking for ANSI C header files... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking size of wchar_t... 4
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checking size of double_int... 16
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configure: RUNNING CONFIGURE FOR src/pm/gforker
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configure: RUNNING CONFIGURE FOR CH3 DEVICE
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configure: Using a memory-mapped file for shared memory
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configure: RUNNING CONFIGURE FOR src/pm/util
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configure: ===== configuring src/mpi/romio =====
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg'  '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-fortran=no' '--build=x86_64--netbsd' '--host=x86_64--netbsd' '--mandir=/usr/pkg/man' 'build_alias=x86_64--netbsd' 'host_alias=x86_64--netbsd' 'CC=clang' 'CFLAGS=-O2 -I/usr/pkg/include -I/usr/include   -O2' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=-lpthread ' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include  -I/data/scratch/parallel/mpi-ch/work/mpich-3.2/src/mpl/include -I/data/scratch/parallel/mpi-ch/work/mpich-3.2/src/mpl/include -I/usr/pkg/include -D_REENTRANT -I/data/scratch/parallel/mpi-ch/work/mpich-3.2/src/mpi/romio/include' 'CXX=clang++' 'CXXFLAGS=-O2 -I/usr/pkg/include -I/usr/include  -O2' 'FC=g77' 'F77=g77' 'FFLAGS=-O ' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c -o pbulkXXX -g users
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for style of include used by make... GNU
checking for x86_64--netbsd-icc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ISO C89... none needed
checking whether clang understands -c and -o together... yes
checking dependency style of clang... gcc3
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checking the archiver (ar) interface... ar
checking build system type... x86_64--netbsd
checking host system type... x86_64--netbsd
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checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking how to convert x86_64--netbsd file names to x86_64--netbsd format... func_convert_file_noop
checking how to convert x86_64--netbsd file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for x86_64--netbsd-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... match_pattern /lib[^/]+(\.so|_pic\.a)$
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checking how to associate runtime and link libraries... printf %s\n
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checking for strip... strip
checking for x86_64--netbsd-ranlib... ranlib
checking command to parse /usr/bin/nm -B output from clang object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64--netbsd-mt... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... clang -E
checking for ANSI C header files... yes
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checking for dlfcn.h... yes
checking for objdir... .libs
checking if clang supports -fno-rtti -fno-exceptions... yes
checking for clang option to produce PIC... -fPIC -DPIC
checking if clang PIC flag -fPIC -DPIC works... yes
checking if clang static flag -static works... yes
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yes
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no
checking dynamic linker characteristics... NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
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Configuring with args dummy mt
checking whether clock skew breaks make... no
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checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for architecture... netbsd
ROMIO home directory is /data/scratch/parallel/mpi-ch/work/mpich-3.2/src/mpi/romio
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no
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checking whether the g77 linker (/usr/bin/ld) supports shared libraries... PKGSRC-WARNING: Something is trying to run the fortran compiler,
PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile.
yes
checking dynamic linker characteristics... PKGSRC-WARNING: Something is trying to run the fortran compiler,
PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile.
NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
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libtool.m4: error: problem compiling FC test program
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no
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checking whether the g77 linker (/usr/bin/ld) supports shared libraries... PKGSRC-WARNING: Something is trying to run the fortran compiler,
PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile.
yes
checking dynamic linker characteristics... PKGSRC-WARNING: Something is trying to run the fortran compiler,
PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile.
NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
checking for long long... yes
checking size of long long... 8
checking for memalign... no
checking Fortran external names
configure: WARNING: Unable to test Fortran compiler.  Compiling a test
program failed to produce an object file
checking for inline... inline
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checking size of int... 4
checking size of void *... 8
checking for int large enough for pointers... no
checking size of long long... (cached) 8
Overriding Array test for MPICH
checking for type of weak symbol alias support... no
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checking whether __attribute__ ((weak_import)) allowed... yes
checking whether __attribute__((weak,alias(...))) allowed... yes
checking whether struct flock compatible with MPI_Offset... yes
checking for pvfs2-config... notfound
checking configured file systems... testfs ufs nfs
configure: WARNING: File locks may not work with NFS.  See the Installation and
users manual for instructions on testing and if necessary fixing this
checking for library containing aio_write... -lrt
checking signal.h usability... yes
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checking for doctext... false
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checking whether ftruncate needs a declaration... no
checking for lseek64... no
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checking for unistd.h... (cached) yes
checking for large file defines... none
setting SYSDEP_INC to 
checking for C/C++ restrict keyword... __restrict
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking for gcov... no
setting CC to clang
setting F77 to :
setting TEST_CC to $(bindir)/mpicc
setting TEST_F77 to $(bindir)/mpifort
setting CFLAGS to -O2 -I/usr/pkg/include -I/usr/include   -O2  -DHAVE_ROMIOCONF_H
setting USER_CFLAGS to 
setting USER_FFLAGS to 
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating mpi2-other/info/Makefile
config.status: creating mpi2-other/array/Makefile
config.status: creating test/Makefile
config.status: creating test/misc.c
config.status: creating test/large_file.c
config.status: creating test/runtests
config.status: creating test-internal/Makefile
config.status: creating util/romioinstall
config.status: creating include/mpio.h
config.status: creating include/mpiof.h
config.status: creating mpi2-other/info/fortran/Makefile
config.status: creating mpi2-other/array/fortran/Makefile
config.status: creating test/fmisc.f
config.status: creating test/fcoll_test.f
config.status: creating test/pfcoll_test.f
config.status: creating test/fperf.f
config.status: creating adio/include/romioconf.h
config.status: executing depfiles commands
config.status: executing libtool commands
rm: libtoolT: No such file or directory
config.status: executing default-1 commands
configure: ===== done with src/mpi/romio configure =====
configure: sourcing src/mpi/romio/localdefs
configure: ===== configuring src/pm/hydra =====
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg'  '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-fortran=no' '--build=x86_64--netbsd' '--host=x86_64--netbsd' '--mandir=/usr/pkg/man' 'build_alias=x86_64--netbsd' 'host_alias=x86_64--netbsd' 'CC=clang' 'CFLAGS=-O2 -I/usr/pkg/include -I/usr/include   -O2' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=-lpthread ' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include  -I/data/scratch/parallel/mpi-ch/work/mpich-3.2/src/mpl/include -I/data/scratch/parallel/mpi-ch/work/mpich-3.2/src/mpl/include -I/usr/pkg/include -D_REENTRANT -I/data/scratch/parallel/mpi-ch/work/mpich-3.2/src/mpi/romio/include' 'CXX=clang++' 'CXXFLAGS=-O2 -I/usr/pkg/include -I/usr/include  -O2' 'FC=g77' 'F77=g77' 'FFLAGS=-O ' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64--netbsd
checking host system type... x86_64--netbsd
checking target system type... x86_64--netbsd
checking for x86_64--netbsd-icc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ISO C89... none needed
checking whether clang understands -c and -o together... yes
checking how to run the C preprocessor... clang -E
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... yes
checking for sys/types.h... yes
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checking for a BSD-compatible install... /usr/bin/install -c -o pbulkXXX -g users
checking whether build environment is sane... yes
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checking for gawk... /usr/bin/awk
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checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tools/bootstrap/src/bsci_init.c
config.status: creating hydra-doxygen.cfg
config.status: creating include/hydra_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
rm: libtoolT: No such file or directory
configure: ===== done with src/pm/hydra configure =====
checking size of OPA_ptr_t... 8
configure: WARNING: Could not define Fortran MPI datatypes for C
checking the sizeof MPI_Offset... 8
checking for size of MPI_Status... 20
configure: WARNING: The ch3 device did not set the maximum size of an error string, 512 being used.
configure: creating ./config.lt
config.lt: creating libtool
rm: libtoolT: No such file or directory
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h
config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c
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config.status: creating src/include/glue_romio.h
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config.status: creating src/binding/fortran/mpif_h/mpif.h
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config.status: creating src/packaging/pkgconfig/mpich.pc
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config.status: WARNING:  'src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting
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config.status: creating src/include/mpichconf.h
config.status: executing depfiles commands
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rm: libtoolT: No such file or directory
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config.status: executing default-5 commands
=== configuring in test/mpi (/data/scratch/parallel/mpi-ch/work/mpich-3.2/test/mpi)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg'  '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-fortran=no' '--build=x86_64--netbsd' '--host=x86_64--netbsd' '--mandir=/usr/pkg/man' 'build_alias=x86_64--netbsd' 'host_alias=x86_64--netbsd' 'CC=clang' 'CFLAGS=-O2 -I/usr/pkg/include -I/usr/include' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include' 'CXX=clang++' 'CXXFLAGS=-O2 -I/usr/pkg/include -I/usr/include' 'FC=g77' 'F77=g77' 'FFLAGS=-O' --cache-file=/dev/null --srcdir=.
RUNNING CONFIGURE FOR MPI TESTS
checking for a BSD-compatible install... /usr/bin/install -c -o pbulkXXX -g users
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking whether make supports nested variables... (cached) yes
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
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checking for x86_64--netbsd-icc... clang
checking whether the C compiler works... yes
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checking whether we are cross compiling... no
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checking whether we are using the GNU C compiler... yes
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configure: WARNING: Selecting integer*8 as the Fortran type for MPI_Offset
configure: WARNING: Selecting integer as the Fortran type for MPI_Aint
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configure: creating ./config.status
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config.status: creating errors/testlist
config.status: creating errors/cxx/testlist
config.status: creating errors/f77/testlist
config.status: creating errors/f90/testlist
config.status: creating impls/testlist
config.status: creating f77/rma/testlist
config.status: creating f90/rma/testlist
config.status: creating f08/rma/testlist
config.status: creating impls/Makefile
config.status: creating impls/hydra/Makefile
config.status: creating impls/hydra/proc_binding.sh
config.status: creating impls/mpich/Makefile
config.status: creating impls/mpich/testlist
config.status: creating impls/mpich/mpi_t/Makefile
config.status: creating include/mpitestconf.h
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
config.status: executing default-4 commands
Configuration completed.
=> Modifying libtool scripts to use pkgsrc libtool
=> Modifying libtool scripts to use pkgsrc depcomp
WARNING: *** Please consider adding fortran to USE_LANGUAGES in the package Makefile.