=> Bootstrap dependency digest>=20010302: found digest-20160304 ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. ===> Building for skampi-5.0.4.355 rm -f Makefile.dep CPP="mpicc " CPPFLAGS="-E" OBJECTS="accounting.o autorefine.o compile.o debug.o exec.o main.o measurement.o mem.o misc.o output.o print.o symboltable.o synchronize.o m.o lexer.o parser.o bug.o coll.o datatypes.o delayed.o demo.o helpers.o io.o localio.o mmisc.o node2node.o onesided.o pt2pt.o" ./makedep.sh accounting.c autorefine.c compile.c debug.c exec.c main.c measurement.c mem.c misc.c output.c print.c symboltable.c synchronize.c measurements/bug.c measurements/coll.c measurements/datatypes.c measurements/delayed.c measurements/demo.c measurements/helpers.c measurements/io.c measurements/localio.c measurements/mmisc.c measurements/node2node.c measurements/onesided.c measurements/pt2pt.c m.c parser.c lexer.c make -f Makefile.dep MPICC="mpicc" CFLAGS="-O2 -I/usr/pkg/include" skampi make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[1]: Entering directory '/data/scratch/benchmarks/skampi/work/skampi-5.0.4-r0355' mpicc -c -O2 -I/usr/pkg/include accounting.c mpicc -c -O2 -I/usr/pkg/include autorefine.c mpicc -c -O2 -I/usr/pkg/include compile.c mpicc -c -O2 -I/usr/pkg/include debug.c mpicc -c -O2 -I/usr/pkg/include exec.c exec.c:232:20: warning: use of logical '||' with constant operand [-Wconstant-logical-operand] debug(DBG_EXEC || DBG_SYMBOLT, "free_variable(unnamed variable)\n"); ^ ~~~~~~~~~~~ exec.c:232:20: note: use '|' for a bitwise operation debug(DBG_EXEC || DBG_SYMBOLT, "free_variable(unnamed variable)\n"); ^~ | exec.c:234:20: warning: use of logical '||' with constant operand [-Wconstant-logical-operand] debug(DBG_EXEC || DBG_SYMBOLT, "free_variable('%s')\n", v->name); ^ ~~~~~~~~~~~ exec.c:234:20: note: use '|' for a bitwise operation debug(DBG_EXEC || DBG_SYMBOLT, "free_variable('%s')\n", v->name); ^~ | 2 warnings generated. mpicc -c -O2 -I/usr/pkg/include main.c mpicc -c -O2 -I/usr/pkg/include measurement.c mpicc -c -O2 -I/usr/pkg/include mem.c mpicc -c -O2 -I/usr/pkg/include misc.c mpicc -c -O2 -I/usr/pkg/include output.c mpicc -c -O2 -I/usr/pkg/include print.c print.c:109:14: warning: format string is not a string literal (potentially insecure) [-Wformat-security] fprintf(f, var_type_to_string(type)); ^~~~~~~~~~~~~~~~~~~~~~~~ print.c:109:14: note: treat the string as an argument to avoid this fprintf(f, var_type_to_string(type)); ^ "%s", print.c:359:16: warning: format string is not a string literal (potentially insecure) [-Wformat-security] fprintf(f, datatype_string(a.v[0])); ^~~~~~~~~~~~~~~~~~~~~~~ print.c:359:16: note: treat the string as an argument to avoid this fprintf(f, datatype_string(a.v[0])); ^ "%s", 2 warnings generated. mpicc -c -O2 -I/usr/pkg/include symboltable.c mpicc -c -O2 -I/usr/pkg/include synchronize.c mpicc -c -O2 -I/usr/pkg/include m.c mpicc -c -O2 -I/usr/pkg/include lexer.c mpicc -c -O2 -I/usr/pkg/include parser.c mpicc -c -O2 -I/usr/pkg/include measurements/bug.c mpicc -c -O2 -I/usr/pkg/include measurements/coll.c measurements/coll.c:31:14: warning: weak identifier 'begin_skampi_extensions' never declared #pragma weak begin_skampi_extensions ^ measurements/coll.c:861:14: warning: weak identifier 'end_skampi_extensions' never declared #pragma weak end_skampi_extensions ^ 2 warnings generated. mpicc -c -O2 -I/usr/pkg/include measurements/datatypes.c measurements/datatypes.c:30:14: warning: weak identifier 'begin_skampi_extensions' never declared #pragma weak begin_skampi_extensions ^ measurements/datatypes.c:123:14: warning: weak identifier 'end_skampi_extensions' never declared #pragma weak end_skampi_extensions ^ 2 warnings generated. mpicc -c -O2 -I/usr/pkg/include measurements/delayed.c measurements/delayed.c:29:14: warning: weak identifier 'begin_skampi_extensions' never declared #pragma weak begin_skampi_extensions ^ measurements/delayed.c:77:14: warning: weak identifier 'end_skampi_extensions' never declared #pragma weak end_skampi_extensions ^ 2 warnings generated. mpicc -c -O2 -I/usr/pkg/include measurements/demo.c measurements/demo.c:33:14: warning: weak identifier 'begin_skampi_extensions' never declared #pragma weak begin_skampi_extensions ^ measurements/demo.c:151:14: warning: weak identifier 'end_skampi_extensions' never declared #pragma weak end_skampi_extensions ^ 2 warnings generated. mpicc -c -O2 -I/usr/pkg/include measurements/helpers.c measurements/helpers.c:376:34: warning: argument type 'int (*)[2]' doesn't match specified 'MPI' type tag that requires 'int *' [-Wtype-safety] MPI_Scatter(pos, 2, MPI_INT, &key, 2, MPI_INT, 0, MPI_COMM_WORLD); ^~~~ ~~~~~~~ measurements/helpers.c:376:17: warning: argument type 'struct item *' doesn't match specified 'MPI' type tag that requires 'int *' [-Wtype-safety] MPI_Scatter(pos, 2, MPI_INT, &key, 2, MPI_INT, 0, MPI_COMM_WORLD); ^~~ ~~~~~~~ measurements/helpers.c:380:35: warning: argument type 'int (*)[2]' doesn't match specified 'MPI' type tag that requires 'int *' [-Wtype-safety] MPI_Scatter(NULL, 2, MPI_INT, &key, 2, MPI_INT, 0, MPI_COMM_WORLD); ^~~~ ~~~~~~~ measurements/helpers.c:43:14: warning: weak identifier 'begin_skampi_extensions' never declared #pragma weak begin_skampi_extensions ^ measurements/helpers.c:617:14: warning: weak identifier 'end_skampi_extensions' never declared #pragma weak end_skampi_extensions ^ 5 warnings generated. mpicc -c -O2 -I/usr/pkg/include measurements/io.c mpicc -c -O2 -I/usr/pkg/include measurements/localio.c mpicc -c -O2 -I/usr/pkg/include measurements/mmisc.c measurements/mmisc.c:31:14: warning: weak identifier 'begin_skampi_extensions' never declared #pragma weak begin_skampi_extensions ^ measurements/mmisc.c:56:14: warning: weak identifier 'end_skampi_extensions' never declared #pragma weak end_skampi_extensions ^ 2 warnings generated. mpicc -c -O2 -I/usr/pkg/include measurements/node2node.c measurements/node2node.c:31:14: warning: weak identifier 'begin_skampi_extensions' never declared #pragma weak begin_skampi_extensions ^ measurements/node2node.c:84:14: warning: weak identifier 'end_skampi_extensions' never declared #pragma weak end_skampi_extensions ^ 2 warnings generated. mpicc -c -O2 -I/usr/pkg/include measurements/onesided.c mpicc -c -O2 -I/usr/pkg/include measurements/pt2pt.c measurements/pt2pt.c:29:14: warning: weak identifier 'begin_skampi_extensions' never declared #pragma weak begin_skampi_extensions ^ measurements/pt2pt.c:468:14: warning: weak identifier 'end_skampi_extensions' never declared #pragma weak end_skampi_extensions ^ 2 warnings generated. mpicc -o skampi accounting.o autorefine.o compile.o debug.o exec.o main.o measurement.o mem.o misc.o output.o print.o symboltable.o synchronize.o m.o lexer.o parser.o bug.o coll.o datatypes.o delayed.o demo.o helpers.o io.o localio.o mmisc.o node2node.o onesided.o pt2pt.o -lm /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_all_end' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_ordered_begin' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_all' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_get_info' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_ordered' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `MPIOI_File_read_all' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_all_end' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `MPIOI_File_write_all_begin' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_get_byte_offset' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_get_atomicity' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `MPIOI_File_write_all' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_get_amode' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_get_position' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_close' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_at_all_begin' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_set_size' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_seek' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_set_atomicity' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_preallocate' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_shared' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_delete' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_all_begin' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_ordered' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_iwrite_at' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_get_view' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_Register_datarep' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `MPIOI_File_iwrite' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_all_begin' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_open' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_set_view' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_at_all_end' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_get_position_shared' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `MPIOI_File_write' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_all' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `MPIOI_File_read_all_begin' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `MPIOI_File_read' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_iwrite' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_at_all' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_seek_shared' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_iread_shared' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_ordered_end' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `MPIOI_File_iread' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_iread_at' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_at_all_begin' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_ordered_begin' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_at' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_set_info' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_iwrite_shared' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_iread' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_at_all_end' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_sync' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_ordered_end' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_get_group' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `MPIOI_File_read_all_end' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_get_size' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_write_shared' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_at' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `MPIOI_File_write_all_end' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_get_type_extent' /data/scratch/benchmarks/skampi/work/.buildlink/lib/libmpich.so: undefined reference to `PMPI_File_read_at_all' clang: error: linker command failed with exit code 1 (use -v to see invocation) Makefile.dep:160: recipe for target 'skampi' failed make[1]: *** [skampi] Error 1 make[1]: Leaving directory '/data/scratch/benchmarks/skampi/work/skampi-5.0.4-r0355' Makefile:27: recipe for target 'skampi' failed gmake: *** [skampi] Error 2 *** Error code 2 Stop. make[1]: stopped in /data/pkgsrc/benchmarks/skampi *** Error code 1 Stop. make: stopped in /data/pkgsrc/benchmarks/skampi