=> Bootstrap dependency digest>=20010302: found digest-20160304
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
===> Installing for puzzle-5.2
=> Generating pre-install file lists
=> Creating installation directories
Making install in src
Making install in sprng
cd sprng && /usr/bin/make makeseed.o store.o memory.o checkid.o lcg64.o primes-lcg64.o
`makeseed.o' is up to date.
`store.o' is up to date.
`memory.o' is up to date.
`checkid.o' is up to date.
`lcg64.o' is up to date.
`primes-lcg64.o' is up to date.
clang  -O2 -I/usr/pkg/include  -L/usr/pkg/lib -Wl,-R/usr/pkg/lib sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o sprng/makeseed.o sprng/store.o sprng/memory.o sprng/checkid.o sprng/lcg64.o sprng/primes-lcg64.o -lm -o puzzle
cd sprng && /usr/bin/make makeseed.o store.o memory.o checkid.o lcg64.o primes-lcg64.o
`makeseed.o' is up to date.
`store.o' is up to date.
`memory.o' is up to date.
`checkid.o' is up to date.
`lcg64.o' is up to date.
`primes-lcg64.o' is up to date.
clang  -O2 -I/usr/pkg/include  -L/usr/pkg/lib -Wl,-R/usr/pkg/lib sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o sprng/makeseed.o sprng/store.o sprng/memory.o sprng/checkid.o sprng/lcg64.o sprng/primes-lcg64.o -lm -o puzzle
/bin/sh ../mkinstalldirs /data/scratch/biology/puzzle/work/.destdir/usr/pkg/bin
mkdir -p -- /data/scratch/biology/puzzle/work/.destdir/usr/pkg/bin
  /usr/bin/install -c -s -o pbulkXXX -g users -m 755 puzzle /data/scratch/biology/puzzle/work/.destdir/usr/pkg/bin/puzzle
Making install in doc
Making install in data
Making install in tests
cd /data/scratch/biology/puzzle/work/tree-puzzle-5.2/doc && /usr/bin/install -c -o pbulkXXX -g users -m 644 tree-puzzle.pdf	 /data/scratch/biology/puzzle/work/.destdir/usr/pkg/share/doc/puzzle
cd /data/scratch/biology/puzzle/work/tree-puzzle-5.2/data && /usr/bin/install -c -o pbulkXXX -g users -m 644 EF.* *.a *.n *.b	 /data/scratch/biology/puzzle/work/.destdir/usr/pkg/share/examples/puzzle
=> Automatic manual page handling
=> Generating post-install file lists
pkg_create: can't stat `/data/scratch/biology/puzzle/work/.destdir/usr/pkg/bin/ppuzzle'
=> Checking file-check results for puzzle-5.2
ERROR: ************************************************************
ERROR: The following files are in the PLIST but not in /data/scratch/biology/puzzle/work/.destdir/usr/pkg:
ERROR:         /data/scratch/biology/puzzle/work/.destdir/usr/pkg/bin/ppuzzle
*** Error code 1

Stop.
make[1]: stopped in /data/pkgsrc/biology/puzzle
*** Error code 1

Stop.
make: stopped in /data/pkgsrc/biology/puzzle