biology/stringtie - The NetBSD Packages Collection

Transcript assembly and quantification for RNA-seq

StringTie is a fast and highly efficient assembler of RNA-seq alignments into
potential transcripts. The input can be the alignments of raw reads as usual;
it also accepts longer assembled sequences. The output can be processed by
downstream software including Ballgown, Cuffdiff, etc.

Build dependencies

pkgtools/mktools devel/gmake pkgtools/cwrappers

Runtime dependencies


Binary packages

NetBSD 10.0aarch64stringtie-2.1.1.tgz
NetBSD 10.0aarch64ebstringtie-2.1.1.tgz
NetBSD 10.0earmv6hfstringtie-2.1.1.tgz
NetBSD 10.0earmv7hfstringtie-2.1.1.tgz
NetBSD 10.0i386stringtie-2.1.1.tgz
NetBSD 10.0vaxstringtie-2.1.1.tgz
NetBSD 10.0_BETAx86_64stringtie-2.1.1.tgz
NetBSD 8.0i386stringtie-2.1.1.tgz
NetBSD 8.0x86_64stringtie-2.1.1.tgz
NetBSD 9.0aarch64stringtie-2.1.1.tgz
NetBSD 9.0earmv4stringtie-2.1.1.tgz
NetBSD 9.0earmv6hfstringtie-2.1.1.tgz
NetBSD 9.0earmv7hfstringtie-2.1.1.tgz
NetBSD 9.0i386stringtie-2.1.1.tgz
NetBSD 9.0sh3elstringtie-2.1.1.tgz
NetBSD 9.0sparcstringtie-2.1.1.tgz
NetBSD 9.0vaxstringtie-2.1.1.tgz
NetBSD 9.0x86_64stringtie-2.1.1.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options


Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.