biology/htslib - The NetBSD Packages Collection

C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.

Build dependencies

pkgtools/mktools devel/automake devel/autoconf shells/bash devel/gmake lang/perl5 pkgtools/cwrappers

Runtime dependencies

www/curl www/curl

Binary packages

NetBSD 10.0aarch64htslib-1.16.tgz
NetBSD 10.0aarch64htslib-1.15.1.tgz
NetBSD 10.0aarch64ebhtslib-1.16.tgz
NetBSD 10.0earmv6hfhtslib-1.15.1.tgz
NetBSD 10.0earmv6hfhtslib-1.16.tgz
NetBSD 10.0earmv7hfhtslib-1.15.1.tgz
NetBSD 10.0i386htslib-1.15.1.tgz
NetBSD 10.0powerpchtslib-1.15.1.tgz
NetBSD 10.0powerpchtslib-1.16.tgz
NetBSD 10.0powerpchtslib-1.15.1.tgz
NetBSD 10.0powerpchtslib-1.16.tgz
NetBSD 10.0x86_64htslib-1.16.tgz
NetBSD 10.0x86_64htslib-1.15.1.tgz
NetBSD 8.0i386htslib-1.16.tgz
NetBSD 8.0i386htslib-1.15.1.tgz
NetBSD 8.0powerpchtslib-1.14.tgz
NetBSD 8.0powerpchtslib-1.16.tgz
NetBSD 8.0x86_64htslib-1.16.tgz
NetBSD 8.0x86_64htslib-1.15.1.tgz
NetBSD 9.0aarch64htslib-1.16.tgz
NetBSD 9.0aarch64htslib-1.15.1.tgz
NetBSD 9.0alphahtslib-1.14.tgz
NetBSD 9.0alphahtslib-1.16.tgz
NetBSD 9.0earmhtslib-1.14.tgz
NetBSD 9.0earmhtslib-1.16.tgz
NetBSD 9.0earmv4htslib-1.16.tgz
NetBSD 9.0earmv6hfhtslib-1.16.tgz
NetBSD 9.0earmv6hfhtslib-1.15.1.tgz
NetBSD 9.0earmv7hfhtslib-1.15.1.tgz
NetBSD 9.0earmv7hfhtslib-1.16.tgz
NetBSD 9.0i386htslib-1.15.tgz
NetBSD 9.0i386htslib-1.16.tgz
NetBSD 9.0i386htslib-1.15.1.tgz
NetBSD 9.0mips64ebhtslib-1.14.tgz
NetBSD 9.0mips64ebhtslib-1.16.tgz
NetBSD 9.0mipselhtslib-1.12nb2.tgz
NetBSD 9.0powerpchtslib-1.15.1.tgz
NetBSD 9.0powerpchtslib-1.15.tgz
NetBSD 9.0powerpchtslib-1.16.tgz
NetBSD 9.0sh3elhtslib-1.14.tgz
NetBSD 9.0sh3elhtslib-1.16.tgz
NetBSD 9.0sparc64htslib-1.14.tgz
NetBSD 9.0sparc64htslib-1.16.tgz
NetBSD 9.0x86_64htslib-1.16.tgz
NetBSD 9.0x86_64htslib-1.15.1.tgz
NetBSD 9.0x86_64htslib-1.15.1.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options


Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.