biology/hisat2 - The NetBSD Packages Collection

Alignment program for mapping next-generation sequencing reads

HISAT2 is a fast and sensitive alignment program for mapping next-generation
sequencing reads (both DNA and RNA) to a population of human genomes (as well
as to a single reference genome).

Build dependencies

devel/simde pkgtools/mktools shells/bash devel/gmake lang/perl5 pkgtools/cwrappers

Runtime dependencies

lang/python311 lang/python311

Binary packages

NetBSD 10.0_BETAx86_64hisat2-2.2.1nb4.tgz
NetBSD 8.0x86_64hisat2-2.2.1nb4.tgz
NetBSD 8.0x86_64hisat2-2.2.1nb2.tgz
NetBSD 8.0x86_64hisat2-2.2.1nb3.tgz
NetBSD 9.0x86_64hisat2-2.2.1nb4.tgz
NetBSD 9.0x86_64hisat2-2.2.1nb2.tgz
NetBSD 9.0x86_64hisat2-2.2.1nb3.tgz
NetBSD 9.3x86_64hisat2-2.2.1nb3.tgz
NetBSD 9.3x86_64hisat2-2.2.1nb3.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options


Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.