biology/gffread - The NetBSD Packages Collection

GFF/GTF format conversions, filtering, FASTA extraction, etc

GFF/GTF utility providing format conversions, filtering, FASTA sequence
extraction and more.  The program gffread can be used to validate,
filter, convert and perform various other operations on GFF files.
Because the program shares the same GFF parser code with Cufflinks,
Stringtie, and gffcompare, it could be used to verify that a GFF file
from a certain annotation source is correctly "understood" by these

Build dependencies

pkgtools/mktools devel/gmake pkgtools/cwrappers

Runtime dependencies


Binary packages

NetBSD 10.0aarch64gffread-0.12.7.tgz
NetBSD 10.0earmv6hfgffread-0.12.7.tgz
NetBSD 10.0earmv7hfgffread-0.12.7.tgz
NetBSD 10.0x86_64gffread-0.12.7.tgz
NetBSD 8.0powerpcgffread-0.12.7.tgz
NetBSD 8.0powerpcgffread-0.12.7.tgz
NetBSD 9.0aarch64gffread-0.12.7.tgz
NetBSD 9.0alphagffread-0.12.7.tgz
NetBSD 9.0earmv6hfgffread-0.12.7.tgz
NetBSD 9.0earmv7hfgffread-0.12.7.tgz
NetBSD 9.0sparc64gffread-0.12.7.tgz
NetBSD 9.0sparcgffread-0.12.7.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options


Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.