biology/canu - The NetBSD Packages Collection

Single molecule sequence assembler for genomes large and small

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule
sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

    Detect overlaps in high-noise sequences using MHAP

    Generate corrected sequence consensus

    Trim corrected sequences

    Assemble trimmed corrected sequences

Build dependencies

devel/boost-headers pkgtools/mktools devel/gmake lang/perl5 pkgtools/cwrappers

Runtime dependencies

devel/boost-libs lang/perl5 lang/perl5 devel/boost-libs

Binary packages

NetBSD 10.0aarch64canu-2.2nb1.tgz
NetBSD 10.0aarch64canu-2.2nb1.tgz
NetBSD 10.0aarch64canu-2.2nb3.tgz
NetBSD 10.0x86_64canu-2.2nb3.tgz
NetBSD 10.0x86_64canu-2.2nb1.tgz
NetBSD 9.0aarch64canu-2.2nb1.tgz
NetBSD 9.0aarch64canu-2.2nb1.tgz
NetBSD 9.0aarch64canu-2.2nb3.tgz
NetBSD 9.0x86_64canu-2.2nb3.tgz
NetBSD 9.0x86_64canu-2.2nb1.tgz
NetBSD 9.3x86_64canu-2.2nb3.tgz
NetBSD 9.3x86_64canu-2.2nb3.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options


Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.