biology/rna-star - The NetBSD Packages Collection

Spliced Transcripts Alignment to a Reference

STAR (Spliced Transcripts Alignment to a Reference) aims to achieve
accurate alignment of high-throughput RNA-seq data.  STAR is based on
a previously undescribed RNA-seq alignment algorithm that uses
sequential maximum mappable seed search in uncompressed suffix arrays
followed by seed clustering and stitching procedure. STAR outperforms
other aligners by a factor of >50 in mapping speed, aligning to the
human genome 550 million 2 x 76 bp paired-end reads per hour on a modest
12-core server, while at the same time improving alignment sensitivity
and precision

Source version: rna-star-2.7.10b
Maintainer:
Website: https://github.com/alexdobin/STAR
License: gnu-gpl-v3
Package history: cvs, hg, git

Build dependencies

pkgtools/mktools devel/gmake pkgtools/cwrappers

Runtime dependencies

biology/htslib

Binary packages

OS	Architecture	Version
NetBSD 10.0	x86_64	rna-star-2.7.10b.tgz
NetBSD 10.0	x86_64	rna-star-2.7.10b.tgz
NetBSD 9.0	x86_64	rna-star-2.7.10b.tgz
NetBSD 9.0	x86_64	rna-star-2.7.10b.tgz
NetBSD 9.3	x86_64	rna-star-2.7.10b.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

(no vulnerabilities known)

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Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

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