=> Bootstrap dependency digest>=20010302: found digest-20121220 => Bootstrap dependency fetch-[0-9]*: found fetch-1.8nb1 WARNING: [license.mk] Every package should define a LICENSE. => Checksum SHA1 OK for netcdf-fortran-4.2.tar.gz => Checksum RMD160 OK for netcdf-fortran-4.2.tar.gz ===> Installing dependencies for netcdf-fortran-4.2 ========================================================================== The supported build options for netcdf-fortran are: f90 You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.netcdf-fortran (not defined) ========================================================================== ========================================================================== The following variables will affect the build process of this package, netcdf-fortran-4.2. Their current value is shown below: * SSLBASE (defined) * SSLCERTS = /usr/pkg/etc/openssl/certs * SSLDIR = /usr/pkg/etc/openssl * SSLKEYS = /usr/pkg/etc/openssl/private You may want to abort the process now with CTRL-C and change their value before continuing. Be sure to run `/usr/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency libtool-base>=2.2.6bnb3: found libtool-base-2.4.2nb1 => Tool dependency f2c>=20090411nb2: found f2c-20100903 => Tool dependency checkperms>=1.1: found checkperms-1.11 => Build dependency libtool-fortran>=2.2.6bnb3: found libtool-fortran-2.4.2nb1 => Full dependency netcdf>=3.5.0nb2: found netcdf-4.2.1.1 => Full dependency libf2c>=20090201nb3: found libf2c-20090201nb3 ===> Overriding tools for netcdf-fortran-4.2 ===> Extracting for netcdf-fortran-4.2 ===> Patching for netcdf-fortran-4.2 ===> Creating toolchain wrappers for netcdf-fortran-4.2 ===> Configuring for netcdf-fortran-4.2 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files configure: netCDF-Fortran 4.2 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /tmp/pkgsrc/devel/netcdf-fortran/work/.tools/bin/mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes configure: checking user options checking whether extra valgrind tests should be run... no checking whether parallel IO tests should be run... no checking whether netCDF extra tests should be run (developers only)... no checking whether F90 API is desired... no checking whether fortran type sizes should be checked... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmaks should be run (experimental)... no checking where to put large temp files if large file tests are run... . configure: finding C compiler checking for x86_64-unknown-linux-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking for an ANSI C-conforming const... yes configure: finding Fortran compiler (will not be used if Fortran API is not desired) checking for x86_64-unknown-linux-gfortran... f77 checking whether we are using the GNU Fortran compiler... yes checking whether f77 accepts -g... yes checking for x86_64-unknown-linux-f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/x86_64-unknown-linux-gnu/bin/ld checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 2097152 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/x86_64-unknown-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-unknown-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-unknown-linux-ar... no checking for ar... ar checking for x86_64-unknown-linux-strip... no checking for strip... strip checking for x86_64-unknown-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove `conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities configure: trying to set fortran flags for this platform checking what FC is set to... f77 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "byte"... yes checking for Fortran "integer*2"... yes checking if Fortran "byte" is C "signed char"... yes checking if Fortran "byte" is C "short"... no checking if Fortran "byte" is C "int"... no checking if Fortran "byte" is C "long"... no checking if Fortran "integer*2" is C "short"... yes checking if Fortran "integer*2" is C "int"... no checking if Fortran "integer*2" is C "long"... no checking if Fortran "integer" is C "int"... yes checking if Fortran "real" is C "float"... yes checking if Fortran "doubleprecision" is C "double"... yes checking for Fortran-equivalent to netCDF "byte"... byte checking for Fortran-equivalent to netCDF "short"... integer*2 checking whether extra example tests should be run... no checking whether a win32 DLL is desired... no configure: checking types, headers, and functions checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for library containing nc_open... -lnetcdf checking for nc_def_opaque... yes checking for nccreate... yes checking for nc_set_log_level... no checking for oc_open... yes checking for nc_use_parallel_enabled... no checking netCDF v2 API present... yes checking netCDF-4 present... yes checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking whether time.h and sys/time.h may both be included... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for vprintf... yes checking for _doprnt... no checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for working alloca.h... yes checking for alloca... yes checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking for longlong... no checking whether char is unsigned... no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 8 configure: generating header files and makefiles configure: creating ./config.status config.status: creating Makefile config.status: creating nf-config config.status: creating netcdf-fortran.pc config.status: creating man4/Makefile config.status: creating fortran/Makefile config.status: creating nf_test/Makefile config.status: creating f90/Makefile config.status: creating examples/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/F77/Makefile config.status: creating config.h config.status: creating fortran/nfconfig1.inc config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory => Modifying libtool scripts to use pkgsrc libtool