=> Bootstrap dependency digest>=20010302: found digest-20121220 => Bootstrap dependency fetch-[0-9]*: found fetch-1.8nb1 WARNING: [license.mk] Every package should define a LICENSE. => Checksum SHA1 OK for mpich-3.0.4.tar.gz => Checksum RMD160 OK for mpich-3.0.4.tar.gz ===> Installing dependencies for mpich-3.0.4 ========================================================================== The supported build options for mpich are: debug f90 mpich-mpd threads The currently selected options are: threads You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.mpich (not defined) ========================================================================== => Tool dependency libtool-base>=2.2.6bnb3: found libtool-base-2.4.2nb1 => Tool dependency nbpatch-[0-9]*: found nbpatch-20100124 => Tool dependency f2c>=20090411nb2: found f2c-20100903 => Tool dependency checkperms>=1.1: found checkperms-1.11 => Build dependency libtool-fortran>=2.2.6bnb3: found libtool-fortran-2.4.2nb1 => Full dependency bash-[0-9]*: found bash-4.2nb2 => Full dependency perl>=5.0: found perl-5.16.3 => Full dependency hwloc>=1.4: found hwloc-1.7 => Full dependency openpa>=1.0.1: found openpa-1.0.4 => Full dependency libf2c>=20090201nb3: found libf2c-20090201nb3 ===> Overriding tools for mpich-3.0.4 ===> Extracting for mpich-3.0.4 ===> Patching for mpich-3.0.4 => Applying pkgsrc patches for mpich-3.0.4 ===> Creating toolchain wrappers for mpich-3.0.4 ===> Configuring for mpich-3.0.4 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files Configuring MPICH version 3.0.4 with '--datadir=/usr/pkg/share/mpich' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--with-openpa-prefix=/usr/pkg' '--with-hwloc-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--disable-fc' '--with-thread-package=posix' '--prefix=/usr/pkg' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include' 'LDFLAGS=-L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib' 'LIBS=' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include' 'F77=f77' 'FFLAGS=-O' 'FC=f77' Running on system: Linux x86_64-linux 3.2.7-altar #1 SMP Thu Mar 1 20:17:31 NZDT 2012 x86_64 x86_64 x86_64 GNU/Linux checking for x86_64-unknown-linux-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /tmp/pkgsrc/parallel/mpi-ch/work/.tools/bin/mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking for style of include used by make... 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(cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for x86_64-unknown-linux-ifort... no checking whether we are using the GNU Fortran compiler... no checking whether no accepts -g... no configure: RUNNING PREREQ FOR ch3:nemesis checking for getpagesize... yes configure: ===== configuring src/mpl ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--with-openpa-prefix=/usr/pkg' '--with-hwloc-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--disable-fc' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include ' 'LDFLAGS=-L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS= ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include ' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include ' 'F77=f77' 'FFLAGS=-O ' 'FC=no' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /tmp/pkgsrc/parallel/mpi-ch/work/.tools/bin/mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking for style of include used by make... 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(cached) yes configure: RUNNING CONFIGURE FOR src/pm/util checking for pid_t... yes checking for setsid... yes checking for isatty... yes checking for getsid... yes checking for unsetenv... yes checking for cygwin1.dll in /bin... yes checking for environ in unistd.h... no checking for extern environ in runtime... yes checking for library containing socketpair... (cached) none required checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for signal.h... (cached) yes checking for sys/ptrace.h... (cached) yes checking for sys/uio.h... (cached) yes checking for unistd.h... (cached) yes checking whether struct iovec is defined in sys/uio.h... yes checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for snprintf... (cached) yes checking for strdup... (cached) yes checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... (cached) yes checking for struct sigaction and sa_handler... yes checking whether snprintf needs a declaration... (cached) no checking whether strdup needs a declaration... (cached) no checking for putenv... (cached) yes checking whether putenv needs a declaration... (cached) no checking for gethostname... yes checking whether gethostname needs a declaration... no checking for select... (cached) yes checking for sys/select.h... (cached) yes checking whether FD_ZERO works... yes checking for sched_setaffinity... (cached) yes checking for sched_getaffinity... (cached) yes checking for bindprocessor... (cached) no checking for thread_policy_set... (cached) no checking whether cpu_set_t available... (cached) yes checking whether the CPU_SET and CPU_ZERO macros are defined... (cached) no checking for string.h... (cached) yes checking for sys/time.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for wait.h... (cached) yes checking for errno.h... (cached) yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for strings.h... (cached) yes checking for assert.h... (cached) yes checking for snprintf... (cached) yes checking whether snprintf needs a declaration... (cached) no checking for strncasecmp... (cached) yes checking for sys/types.h... (cached) yes checking for sys/param.h... (cached) yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... (cached) yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... (cached) yes checking whether __attribute__((format)) allowed... (cached) yes configure: RUNNING CONFIGURE FOR CH3 DEVICE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking uuid/uuid.h usability... yes checking uuid/uuid.h presence... yes checking for uuid/uuid.h... yes checking for time.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for sys/socket.h... (cached) yes checking for net/if.h... yes checking for pid_t... (cached) yes checking for inet_pton... yes checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking for OpenPA atomic primitive availability... yes checking whether byte ordering is bigendian... (cached) no configure: RUNNING CONFIGURE FOR ch3:nemesis checking for net/if.h... yes checking for assert.h... (cached) yes checking for netdb.h... (cached) yes checking for unistd.h... (cached) yes checking for sched.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/socket.h... (cached) yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/types.h... (cached) yes checking for errno.h... (cached) yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking for netinet/in.h... (cached) yes checking for signal.h... (cached) yes checking for signal... (cached) yes checking for mkstemp... (cached) yes checking for rand... yes checking for srand... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking whether struct hostent contains h_addr_list... (cached) yes checking whether we can use struct ifconf... yes checking whether we can use struct ifreq... yes checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no configure: ===== configuring src/mpi/romio ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--with-openpa-prefix=/usr/pkg' '--with-hwloc-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--disable-fc' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich-3.0.4/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich-3.0.4/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich-3.0.4/src/mpi/romio/include' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include -O2' 'F77=f77' 'FFLAGS=-O -O2' 'FC=no' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by make... GNU checking for x86_64-unknown-linux-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for x86_64-unknown-linux-ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 2097152 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64 option to reload object files... -r checking for x86_64-unknown-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-unknown-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-unknown-linux-ar... (cached) ar checking for archiver @FILE support... @ checking for x86_64-unknown-linux-strip... no checking for strip... strip checking for x86_64-unknown-linux-ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for x86_64-unknown-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove `conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes Configuring with args dummy mt checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... LINUX ROMIO home directory is /tmp/pkgsrc/parallel/mpi-ch/work/mpich-3.0.4/src/mpi/romio checking for x86_64-unknown-linux-ifort... no checking whether we are using the GNU Fortran 77 compiler... no checking whether no accepts -g... no checking for x86_64-unknown-linux-ifort... no checking whether we are using the GNU Fortran compiler... no checking whether no accepts -g... no checking how to run the C preprocessor... gcc -E checking for memalign... yes checking Fortran external names configure: WARNING: Unable to test Fortran compiler. Compiling a test program failed to produce an object file checking for inline... inline checking how to run the C preprocessor... gcc -E checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... 8 Overriding Array test for MPICH checking for weak symbol support... pragma weak checking that weak symbols are visible to other files... yes checking that the compiler correctly implements weak symbols... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... yes checking if sys/aio.h exists and can be compiled... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... yes checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... yes checking for aio_sigevent member of aiocb structure... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for unistd.h... (cached) yes checking for large file defines... yes setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to : setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpif77 setting CFLAGS to -O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include -O2 -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--with-openpa-prefix=/usr/pkg' '--with-hwloc-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--disable-fc' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include -O2' 'LDFLAGS=-L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich-3.0.4/src/mpl/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich-3.0.4/src/mpl/include -I/usr/pkg/include -I/tmp/pkgsrc/parallel/mpi-ch/work/mpich-3.0.4/src/mpi/romio/include' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include -O2' 'F77=f77' 'FFLAGS=-O -O2' 'FC=no' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for x86_64-unknown-linux-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking for x86_64-unknown-linux-ar... ar checking the archiver (ar) interface... ar checking whether make supports nested variables... yes checking whether gcc and cc understand -c and -o together... yes checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 8 checking for size_t... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 2097152 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64 option to reload object files... -r checking for x86_64-unknown-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-unknown-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-unknown-linux-ar... (cached) ar checking for archiver @FILE support... @ checking for x86_64-unknown-linux-strip... no checking for strip... strip checking for x86_64-unknown-linux-ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for x86_64-unknown-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... /bin/rm: cannot remove `conftest*': No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove `conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for variable argument list macro functionality... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking for doxygen... no checking for gcov... gcov checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for netdb.h... (cached) yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for socket in -lsocket... no checking for gethostbyname in -lnsl... yes checking for gettimeofday... yes checking for time... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strerror... yes checking for strsignal... yes checking for stat... yes checking for getifaddrs... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking hwloc.h usability... yes checking hwloc.h presence... yes checking for hwloc.h... yes checking for hwloc_topology_set_pid in -lhwloc... yes checking if non-embedded hwloc works... yes checking available processor topology libraries... hwloc checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... no checking libcr.h presence... no checking for libcr.h... no checking for cr_init in -lcr... no checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... none checking error checking... yes checking warnings... no checking profiling... yes checking libftb.h usability... no checking libftb.h presence... no checking for libftb.h... no checking for FTB_Connect in -lftb... no checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking for size of MPI_Status... 40 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... unknown checking the minimum alignment of Fortran common block of 10 integers... unknown configure: creating ./config.lt config.lt: creating libtool /bin/rm: cannot remove `libtoolT': No such file or directory checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/glue_romio.h config.status: creating src/include/mpichtimer.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/f77/mpif.h config.status: creating src/binding/f77/setbotf.f config.status: creating src/binding/f77/setbot.c config.status: creating src/binding/f90/mpi_sizeofs.f90 config.status: creating src/binding/f90/mpi_base.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: WARNING: 'src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.conf config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.conf config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.conf config.status: creating src/env/mpif77.bash config.status: creating src/env/mpif90.sh config.status: creating src/env/mpif90.conf config.status: creating src/env/mpif90.bash config.status: creating src/env/parkill config.status: creating src/util/dbg/getfuncstack config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/smpd/Makefile config.status: creating doc/userguide/Makefile config.status: creating doc/windev/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands === configuring in test/mpi (/tmp/pkgsrc/parallel/mpi-ch/work/mpich-3.0.4/test/mpi) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich' '--sysconfdir=/usr/pkg/etc/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--with-openpa-prefix=/usr/pkg' '--with-hwloc-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--disable-fc' '--with-thread-package=posix' '--build=x86_64-unknown-linux' '--host=x86_64-unknown-linux' '--mandir=/usr/pkg/share/man' 'build_alias=x86_64-unknown-linux' 'host_alias=x86_64-unknown-linux' 'CC=gcc' 'CFLAGS=-O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include' 'LDFLAGS=-L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib' 'LIBS=' 'CPPFLAGS=-I/usr/include -I/usr/pkg/include' 'CXX=g++' 'CXXFLAGS=-O3 -pipe -fstack-protector -Wno-error -I/usr/include -I/usr/pkg/include' 'F77=f77' 'FFLAGS=-O' 'FC=f77' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether make supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by make... GNU checking for x86_64-unknown-linux-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for x86_64-unknown-linux-ranlib... ranlib checking for x86_64-unknown-linux-ar... ar checking the archiver (ar) interface... ar checking for grep that handles long lines and -e... (cached) /bin/grep checking for fgrep... /bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... (cached) /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking for x86_64-unknown-linux-ifort... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to get verbose linking output from f77... --verbose checking for Fortran 77 libraries of f77... -L/tmp/pkgsrc/parallel/mpi-ch/work/.buildlink/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../../../x86_64-unknown-linux-gnu/lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.5.2/../../.. -R/usr/pkg/lib -lpthread -lf2c -lm checking for Fortran 77 name mangling... lower 2uscore checking whether f77 allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... no checking for x86_64-unknown-linux-ifort... f77 checking whether we are using the GNU Fortran compiler... yes checking whether f77 accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/pkg/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/init/Makefile config.status: creating threads/spawn/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/errhan/Makefile config.status: creating errors/f77/errhan/addsize.h config.status: creating errors/f77/errhan/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/errhan/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands Configuration completed. => Modifying libtool scripts to use pkgsrc libtool