=> Bootstrap dependency digest>=20010302: found digest-20121220 => Bootstrap dependency fetch-[0-9]*: found fetch-1.8nb1 ===> Building for plinkseq-0.08 --- all --- /usr/pkg/bin/bmake all-recursive --- all-recursive --- Making all in lib --- libplinkseq_la-eval.lo --- --- libplinkseq_la-token.lo --- --- libplinkseq_la-vcfz.lo --- --- libplinkseq_la-gstore.lo --- --- libplinkseq_la-globals.lo --- --- libplinkseq_la-eval.lo --- /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/pkg/include -O3 -pipe -fstack-protector -I/usr/pkg/include -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c -o libplinkseq_la-eval.lo `test -f 'eval.cpp' || echo './'`eval.cpp --- libplinkseq_la-token.lo --- /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/pkg/include -O3 -pipe -fstack-protector -I/usr/pkg/include -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c -o libplinkseq_la-token.lo `test -f 'token.cpp' || echo './'`token.cpp --- libplinkseq_la-vcfz.lo --- /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/pkg/include -O3 -pipe -fstack-protector -I/usr/pkg/include -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c -o libplinkseq_la-vcfz.lo `test -f 'vcfz.cpp' || echo './'`vcfz.cpp --- libplinkseq_la-gstore.lo --- /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/pkg/include -O3 -pipe -fstack-protector -I/usr/pkg/include -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c -o libplinkseq_la-gstore.lo `test -f 'gstore.cpp' || echo './'`gstore.cpp --- libplinkseq_la-globals.lo --- /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/pkg/include -O3 -pipe -fstack-protector -I/usr/pkg/include -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c -o libplinkseq_la-globals.lo `test -f 'globals.cpp' || echo './'`globals.cpp --- libplinkseq_la-eval.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/pkgsrc/biology/plinkseq/work/.buildlink/include -O3 -pipe -fstack-protector -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -fPIC -DPIC -o .libs/libplinkseq_la-eval.o --- libplinkseq_la-vcfz.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/pkgsrc/biology/plinkseq/work/.buildlink/include -O3 -pipe -fstack-protector -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -fPIC -DPIC -o .libs/libplinkseq_la-vcfz.o --- libplinkseq_la-globals.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/pkgsrc/biology/plinkseq/work/.buildlink/include -O3 -pipe -fstack-protector -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c globals.cpp -fPIC -DPIC -o .libs/libplinkseq_la-globals.o --- libplinkseq_la-token.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/pkgsrc/biology/plinkseq/work/.buildlink/include -O3 -pipe -fstack-protector -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -fPIC -DPIC -o .libs/libplinkseq_la-token.o --- libplinkseq_la-gstore.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/pkgsrc/biology/plinkseq/work/.buildlink/include -O3 -pipe -fstack-protector -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c gstore.cpp -fPIC -DPIC -o .libs/libplinkseq_la-gstore.o --- libplinkseq_la-eval.lo --- In file included from svar.h:6:0, from variant.h:22, from token.h:4, from eval.h:4, from eval.cpp:8: variant.pb.h:17:2: error: #error This file was generated by an older version of protoc which is variant.pb.h:18:2: error: #error incompatible with your Protocol Buffer headers. Please variant.pb.h:19:2: error: #error regenerate this file with a newer version of protoc. --- libplinkseq_la-gstore.lo --- In file included from svar.h:6:0, from variant.h:22, from gstore.h:6, from gstore.cpp:2: variant.pb.h:17:2: error: #error This file was generated by an older version of protoc which is variant.pb.h:18:2: error: #error incompatible with your Protocol Buffer headers. Please variant.pb.h:19:2: error: #error regenerate this file with a newer version of protoc. --- libplinkseq_la-globals.lo --- In file included from svar.h:6:0, from variant.h:22, from gstore.h:6, from globals.cpp:1: --- libplinkseq_la-token.lo --- In file included from svar.h:6:0, from variant.h:22, from token.h:4, from token.cpp:2: variant.pb.h:17:2: error: #error This file was generated by an older version of protoc which is variant.pb.h:18:2: error: #error incompatible with your Protocol Buffer headers. Please --- libplinkseq_la-vcfz.lo --- In file included from svar.h:6:0, from variant.h:22, from vcfz.cpp:3: variant.pb.h:17:2: error: #error This file was generated by an older version of protoc which is --- libplinkseq_la-token.lo --- variant.pb.h:19:2: error: #error regenerate this file with a newer version of protoc. --- libplinkseq_la-vcfz.lo --- variant.pb.h:18:2: error: #error incompatible with your Protocol Buffer headers. Please variant.pb.h:19:2: error: #error regenerate this file with a newer version of protoc. --- libplinkseq_la-globals.lo --- variant.pb.h:17:2: error: #error This file was generated by an older version of protoc which is variant.pb.h:18:2: error: #error incompatible with your Protocol Buffer headers. Please variant.pb.h:19:2: error: #error regenerate this file with a newer version of protoc. --- libplinkseq_la-eval.lo --- *** [libplinkseq_la-eval.lo] Error code 1 bmake: stopped in /tmp/pkgsrc/biology/plinkseq/work/plinkseq-0.08/lib --- libplinkseq_la-globals.lo --- *** [libplinkseq_la-globals.lo] Error code 1 bmake: stopped in /tmp/pkgsrc/biology/plinkseq/work/plinkseq-0.08/lib --- libplinkseq_la-vcfz.lo --- *** [libplinkseq_la-vcfz.lo] Error code 1 bmake: stopped in /tmp/pkgsrc/biology/plinkseq/work/plinkseq-0.08/lib --- libplinkseq_la-gstore.lo --- *** [libplinkseq_la-gstore.lo] Error code 1 bmake: stopped in /tmp/pkgsrc/biology/plinkseq/work/plinkseq-0.08/lib --- libplinkseq_la-token.lo --- *** [libplinkseq_la-token.lo] Error code 1 bmake: stopped in /tmp/pkgsrc/biology/plinkseq/work/plinkseq-0.08/lib 5 errors bmake: stopped in /tmp/pkgsrc/biology/plinkseq/work/plinkseq-0.08/lib *** [all-recursive] Error code 1 bmake: stopped in /tmp/pkgsrc/biology/plinkseq/work/plinkseq-0.08 1 error bmake: stopped in /tmp/pkgsrc/biology/plinkseq/work/plinkseq-0.08 *** [all] Error code 2 bmake: stopped in /tmp/pkgsrc/biology/plinkseq/work/plinkseq-0.08 1 error bmake: stopped in /tmp/pkgsrc/biology/plinkseq/work/plinkseq-0.08 *** Error code 2 Stop. bmake: stopped in /usr/pkgsrc/biology/plinkseq *** Error code 1 Stop. bmake: stopped in /usr/pkgsrc/biology/plinkseq