=> Bootstrap dependency digest>=20010302: found digest-20121220
WARNING: [license.mk] Every package should define a LICENSE.
=> Checksum SHA1 OK for wise2.2.0.tar.gz
=> Checksum RMD160 OK for wise2.2.0.tar.gz
===> Installing dependencies for wise-2.2.0nb1
=> Tool dependency checkperms>=1.1: found checkperms-1.11
===> Overriding tools for wise-2.2.0nb1
===> Extracting for wise-2.2.0nb1
===> Patching for wise-2.2.0nb1
=> Applying pkgsrc patches for wise-2.2.0nb1
=> Verifying /usr/pkgsrc/wip/wise2/patches/patch-aa
=> Applying pkgsrc patch /usr/pkgsrc/wip/wise2/patches/patch-aa
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD$
|
|--- src/makefile.orig	Thu Jun 19 22:46:19 2003
|+++ src/makefile
--------------------------
Patching file src/makefile using Plan A...
Hunk #1 succeeded at 89.
done
=> Verifying /usr/pkgsrc/wip/wise2/patches/patch-ac
=> Applying pkgsrc patch /usr/pkgsrc/wip/wise2/patches/patch-ac
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD$
|
|--- src/HMMer2/sqio.c.orig	2011-10-26 13:18:53.000000000 +0000
|+++ src/HMMer2/sqio.c	2011-10-26 13:18:55.000000000 +0000
--------------------------
Patching file src/HMMer2/sqio.c using Plan A...
Hunk #1 succeeded at 213 (offset -6 lines).
Hunk #2 succeeded at 229 (offset -6 lines).
Hunk #3 succeeded at 299 (offset -6 lines).
Hunk #4 succeeded at 327 (offset -6 lines).
Hunk #5 succeeded at 336 (offset -6 lines).
Hunk #6 succeeded at 345 (offset -6 lines).
Hunk #7 succeeded at 359 (offset -6 lines).
Hunk #8 succeeded at 377 (offset -6 lines).
Hunk #9 succeeded at 389 (offset -6 lines).
Hunk #10 succeeded at 411 (offset -6 lines).
Hunk #11 succeeded at 420 (offset -6 lines).
Hunk #12 succeeded at 438 (offset -6 lines).
Hunk #13 succeeded at 449 (offset -6 lines).
Hunk #14 succeeded at 482 (offset -6 lines).
Hunk #15 succeeded at 515 (offset -6 lines).
Hunk #16 succeeded at 535 (offset -6 lines).
Hunk #17 succeeded at 555 (offset -6 lines).
Hunk #18 succeeded at 587 (offset -6 lines).
Hunk #19 succeeded at 596 (offset -6 lines).
Hunk #20 succeeded at 620 (offset -6 lines).
Hunk #21 succeeded at 636 (offset -6 lines).
Hunk #22 succeeded at 647 (offset -6 lines).
Hunk #23 succeeded at 669 (offset -6 lines).
Hunk #24 succeeded at 681 (offset -6 lines).
Hunk #25 succeeded at 689 (offset -6 lines).
Hunk #26 succeeded at 721 (offset -6 lines).
Hunk #27 succeeded at 736 (offset -6 lines).
Hunk #28 succeeded at 816 (offset -6 lines).
Hunk #29 succeeded at 833 (offset -6 lines).
Hunk #30 succeeded at 853 (offset -6 lines).
Hunk #31 succeeded at 955 (offset 1 line).
done
===> Creating toolchain wrappers for wise-2.2.0nb1
===> Configuring for wise-2.2.0nb1
=> Checking for portability problems in extracted files